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A multi-omics approach elucidates the link between artificial food colorings and common cancers

23 February 2026 at 19:00

Front Nutr. 2026 Feb 5;13:1743416. doi: 10.3389/fnut.2026.1743416. eCollection 2026.

ABSTRACT

BACKGROUND: Artificial food colorings (AFCs) are widely used, yet their potential links to cancer remain unclear. We investigated associations between commonly used AFCs and cancer-related molecular networks and prognosis.

METHODS: AFCs-related targets were collected from CTD, ChEMBL, SEA, and TargetNet, and cancer-related targets from GeneCards, OMIM, and CTD. Overlapping targets were subjected to STRING-based PPI analysis and Cytoscape visualization, followed by GO/KEGG enrichment. Core targets were evaluated for differential expression in GEO datasets of non-small cell lung cancer (NSCLC), colon adenocarcinoma (COAD), gastric cancer (GC), and breast cancer (BRCA), with GSEA for pathway characterization. Expression patterns were examined using GEPIA2. TCGA transcriptomic and clinical data were used to construct prognostic models via univariate Cox regression, LASSO selection, and multivariate Cox regression. Key genes were assessed using the Human Protein Atlas (HPA) and qPCR, and in vivo experiments evaluated tumor growth under AFCs exposure.

RESULTS: Four high-exposure AFCs were analyzed. We identified 108 shared AFCs-cancer targets and prioritized 50 core targets. Enrichment analyses highlighted cancer-relevant functional themes, including cell-cycle regulation (cyclin-dependent protein kinase holoenzyme complex) and oncogenic signaling (PI3K-Akt pathway). Multiple core targets were dysregulated in GEO tumor datasets, and GSEA identified consistently enriched pathways across cancer types. TCGA-derived signatures stratified patients into distinct risk groups with significantly different overall survival. HPA supported protein-level differences for selected targets, qPCR indicated that Allura Red AC or Tartrazine modulated prognostic gene expression in cancer cell lines, and AFCs exposure was associated with accelerated LLC tumor growth in mice.

CONCLUSION: This integrative analysis suggests that commonly used AFCs may be associated with cancer-related molecular networks and adverse prognosis in NSCLC, COAD, GC, and BRCA, informing future safety evaluation and regulation.

PMID:41727196 | PMC:PMC12916573 | DOI:10.3389/fnut.2026.1743416

Improving Large Language Model Applications in the Medical and Nursing Domains With Retrieval-Augmented Generation: Scoping Review

Background: Retrieval-augmented generation (RAG) is increasingly used to improve large language models in the medical and nursing domains. However, a comprehensive understanding of its specific architecture and applications in medical and nursing reasoning remains limited. Objective: We aimed to summarize the current state, existing limitations, and future development directions of RAG in the medical and nursing domains. Methods: The PubMed, Web of Science, IEEE Xplore, and arXiv databases were searched for relevant articles using queries that combined terms related to RAG, medical, and nursing domains, covering the period from November 1, 2022, to May 31, 2025. This review was conducted following the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Reviews) guidelines. Results: A total of 917 articles were retrieved, of which 67 met the inclusion criteria. Most studies focused on the medical domain (63/67, 94%), while only a few addressed nursing applications (4/67, 6%). The RAG frameworks included in this review were categorized into 5 functional types: text-based RAG (36/67, 54%), knowledge graph–enhanced RAG (17/67, 25%), agentic RAG (6/67, 9%), multimodal RAG (2/67, 3%), and plug-and-play RAG (6/67, 9%). On the basis of the Simon decision-making process theory, we divided the RAG workflow into 4 stages: intent recognition, knowledge retrieval, knowledge integration, and generation. Only 26 studies included explicit reasoning support, and few were aligned with real-world clinical workflows. Only 12 studies attempted to address ethical considerations related to RAG. Conclusions: We identified 4 key shifts in recent RAG development: shifting from surface-level matching toward contextualized intent recognition, from vague semantics toward logic-driven dynamic retrieval, from passive toward active knowledge retrieval, and from simple aggregation toward coherent context construction. However, most RAG systems in the medical and nursing domains have not yet introduced reasoning methods, and those that have are still predominantly reliant on data‑driven associations without causal modeling. This highlights the need to integrate causal mechanisms for more effective and domain-relevant reasoning in health care. Trial Registration: OSF Registries 10.17605/OSF.IO/WBSV5; https://osf.io/wbsv5

Enhancer reprogramming: critical roles in cancer and promising therapeutic strategies

Cell Death Discovery, Published online: 03 March 2025; doi:10.1038/s41420-025-02366-3

Enhancer reprogramming: critical roles in cancer and promising therapeutic strategies
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