Normal view
-
Journal of Medical Internet Research
-
Health care Experiences of Educated Young Adults With Blindness in the Digital Age: Qualitative Study
Background: The rapid advancement of digital health technologies (DHTs) offers substantial potential for improving healthcare access, yet it simultaneously risks exacerbating existing inequities for marginalized populations. Previous research on the digital divide has often treated individuals with blindness as a homogenous group, primarily focusing on barriers related to digital access and skills. However, less is known about the nuanced experiences of specific subgroups, such as educated and d
-
Journal of Medical Internet Research
-
Impact of Digital Interventions on the Treatment Burden of Patients With Chronic Conditions: Systematic Review
Background: Digital interventions can provide cost-effective, quality health care for patients with chronic conditions. Patients with chronic conditions often are burdened by a substantial load of adhering to a treatment regimen and suffer from impacts on their function and well-being. This treatment burden has consequences for treatment adherence and disease outcomes. Digital interventions have the potential to alleviate the burden, but they also may cause new challenges and an increased worklo
Impact of Digital Interventions on the Treatment Burden of Patients With Chronic Conditions: Systematic Review
-
Nature Biotechnology - Issue - nature.com science feeds
-
Programmable initiation of mRNA translation by <i>trans-</i>RNA
Nature Biotechnology, Published online: 21 November 2025; doi:10.1038/s41587-025-02897-1Translation can be initiated from a specific start codon using trans-RNA.
Programmable initiation of mRNA translation by <i>trans-</i>RNA
Nature Biotechnology, Published online: 21 November 2025; doi:10.1038/s41587-025-02897-1
Translation can be initiated from a specific start codon using trans-RNA.-
Most Recent Articles: Clinical Epigenetics
-
Clinical validation of a three-marker methylation panel to detect CIN3+ in vaginal self-samples in the Dutch population-based screening programme
The use of vaginal self-sampling for cervical cancer screening is promising and increasing. However, triage cytology cannot be performed on vaginal self-sampling material after a high-risk human papilloma viru...
Clinical validation of a three-marker methylation panel to detect CIN3+ in vaginal self-samples in the Dutch population-based screening programme
-
cs.AI, q-bio.NC updates on arXiv.org
-
Accelerating Local AI on Consumer GPUs: A Hardware-Aware Dynamic Strategy for YOLOv10s
arXiv:2509.07928v2 Announce Type: replace-cross Abstract: As local AI grows in popularity, there is a critical gap between the benchmark performance of object detectors and their practical viability on consumer-grade hardware. While models like YOLOv10s promise real-time speeds, these metrics are typically achieved on high-power, desktop-class GPUs. This paper reveals that on resource-constrained systems, such as laptops with RTX 4060 GPUs, performance is not compute-bound but is instead domina
Accelerating Local AI on Consumer GPUs: A Hardware-Aware Dynamic Strategy for YOLOv10s
-
cs.AI, q-bio.NC updates on arXiv.org
-
Uncertainty Makes It Stable: Curiosity-Driven Quantized Mixture-of-Experts
arXiv:2511.11743v2 Announce Type: replace-cross Abstract: Deploying deep neural networks on resource-constrained devices faces two critical challenges: maintaining accuracy under aggressive quantization while ensuring predictable inference latency. We present a curiosity-driven quantized Mixture-of-Experts framework that addresses both through Bayesian epistemic uncertainty-based routing across heterogeneous experts (BitNet ternary, 1-16 bit BitLinear, post-training quantization). Evaluated on
Uncertainty Makes It Stable: Curiosity-Driven Quantized Mixture-of-Experts
-
(Multiomics OR Omics) AND (Pancreatic)
-
Pan-cancer prevalence, risk, and clinical and demographic characteristics of Lynch Syndrome-associated variants in BioBank Japan
Commun Med (Lond). 2025 Nov 13. doi: 10.1038/s43856-025-01231-9. Online ahead of print.ABSTRACTBACKGROUND: Although germline testing for DNA mismatch repair (MMR) genes is routinely performed, clinical guidelines highlight evidence gaps due to limited populations and biases. We examined germline pathogenic variants of MMR genes (MLH1, MSH2, MSH6, and PMS2) in 112,927 unselected individuals from BioBank Japan.METHODS: We analyzed 74,085 cancer patients with 23 cancer types and 38,842 controls mat
Pan-cancer prevalence, risk, and clinical and demographic characteristics of Lynch Syndrome-associated variants in BioBank Japan
Commun Med (Lond). 2025 Nov 13. doi: 10.1038/s43856-025-01231-9. Online ahead of print.
ABSTRACT
BACKGROUND: Although germline testing for DNA mismatch repair (MMR) genes is routinely performed, clinical guidelines highlight evidence gaps due to limited populations and biases. We examined germline pathogenic variants of MMR genes (MLH1, MSH2, MSH6, and PMS2) in 112,927 unselected individuals from BioBank Japan.
METHODS: We analyzed 74,085 cancer patients with 23 cancer types and 38,842 controls matched by sex, age, and hospital area from BioBank Japan, collected between April 2003 and March 2018. Germline pathogenic variants in the coding regions and 2 bp flanking intronic sequences of MMR genes were identified using a multiplex PCR-based target sequencing method. We examined associations with cancer types and demographic characterization of the pathogenic variants, comparing findings to existing clinical guidelines.
RESULTS: Here we show 228 pathogenic variants identified in MMR genes, with pathogenic MSH6 variants most frequently observed in endometrial cancer and 12 other significant associations. Twelve other significant associations are noted across a broad range of odds ratios, whereas pancreatic cancer exhibits no such association. Pathogenic variant carriers are diagnosed up to 12.4 years earlier than non-carriers, and colorectal and gastric cancers are diagnosed up to 16.4 years later than indicated by the guidelines. Higher carrier frequencies are observed in patients with both colorectal and endometrial cancers (24.8%) and in those with endometrial cancer and a family history of endometrial (26.0%) or colorectal (16.1%) cancers.
CONCLUSIONS: This study provides critical insights for clinical guidelines on the associations between cancer types, age at diagnosis, and carrier frequency.
PMID:41258140 | DOI:10.1038/s43856-025-01231-9
-
(Multiomics OR Omics) AND (Pancreatic)
-
Latent plasticity of the human pancreas across development, health, and disease
bioRxiv [Preprint]. 2025 Oct 3:2025.10.01.679230. doi: 10.1101/2025.10.01.679230.ABSTRACTThe pancreas plays a central role in major human diseases, yet our understanding of its cellular diversity and plasticity remains incomplete. Here, we present a single-cell multiomics atlas of the human pancreas, profiling over four million cells and nuclei from 57 donors across fetal development, adult homeostasis, and type 2 diabetes (T2D). Integrating sc/snRNA-seq, snATAC-seq, VASA-seq, spatial transcript
Latent plasticity of the human pancreas across development, health, and disease
bioRxiv [Preprint]. 2025 Oct 3:2025.10.01.679230. doi: 10.1101/2025.10.01.679230.
ABSTRACT
The pancreas plays a central role in major human diseases, yet our understanding of its cellular diversity and plasticity remains incomplete. Here, we present a single-cell multiomics atlas of the human pancreas, profiling over four million cells and nuclei from 57 donors across fetal development, adult homeostasis, and type 2 diabetes (T2D). Integrating sc/snRNA-seq, snATAC-seq, VASA-seq, spatial transcriptomics (Xenium), and multiplexed proteomics (CODEX), we resolve gene expression, chromatin accessibility, and spatial organization at high resolution. We identify transcriptionally plastic centroacinar-like cells (pCACs) in adults with fetal-like features, delineate endocrine and exocrine lineage trajectories during development, and uncover HNF1A-defined beta cell epigenetic states. In T2D, we observe shifts in beta cell subtypes and altered regulatory programs. Glucose perturbation of healthy islets reveals cell-type-specific adaptation and stress responses. This atlas provides a foundational framework to understand pancreas biology and the role of cellular plasticity in regeneration and disease.
PMID:41256699 | PMC:PMC12622017 | DOI:10.1101/2025.10.01.679230
-
Nature Cancer
-
SMMILe enables accurate spatial quantification in digital pathology using multiple-instance learning
Nature Cancer, Published online: 19 November 2025; doi:10.1038/s43018-025-01060-8Gao et al. present SMMILe, a multiple-instance learning-based tool that leverages whole-slide images for accurate spatial quantification without compromising on classification performance, and show it outperforms state-of-the-art methods.
SMMILe enables accurate spatial quantification in digital pathology using multiple-instance learning
Nature Cancer, Published online: 19 November 2025; doi:10.1038/s43018-025-01060-8
Gao et al. present SMMILe, a multiple-instance learning-based tool that leverages whole-slide images for accurate spatial quantification without compromising on classification performance, and show it outperforms state-of-the-art methods.-
Nature Biotechnology - Issue - nature.com science feeds
-
Need for a shared language and minimum information standards for bioprocess development
Nature Biotechnology, Published online: 19 November 2025; doi:10.1038/s41587-025-02929-wNeed for a shared language and minimum information standards for bioprocess development
Need for a shared language and minimum information standards for bioprocess development
Nature Biotechnology, Published online: 19 November 2025; doi:10.1038/s41587-025-02929-w
Need for a shared language and minimum information standards for bioprocess development-
cs.AI, q-bio.NC updates on arXiv.org
-
Foundation Models in Medical Imaging: A Review and Outlook
arXiv:2506.09095v4 Announce Type: replace-cross Abstract: Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features that can later be adapted to specific clinical tasks with little additional supervision. In this review, we examine how FMs are being developed and applied in pathology, radiology, and ophthalmology, dr
Foundation Models in Medical Imaging: A Review and Outlook
-
npj Digital Medicine
-
Reply to: Utilizing foundation models for developing clinical tools
npj Digital Medicine, Published online: 18 November 2025; doi:10.1038/s41746-025-02066-3Reply to: Utilizing foundation models for developing clinical tools
Reply to: Utilizing foundation models for developing clinical tools
npj Digital Medicine, Published online: 18 November 2025; doi:10.1038/s41746-025-02066-3
Reply to: Utilizing foundation models for developing clinical tools-
npj Digital Medicine
-
Large language models driven neural architecture search for universal and lightweight disease diagnosis on histopathology slide images
npj Digital Medicine, Published online: 18 November 2025; doi:10.1038/s41746-025-02042-xLarge language models driven neural architecture search for universal and lightweight disease diagnosis on histopathology slide images
Large language models driven neural architecture search for universal and lightweight disease diagnosis on histopathology slide images
npj Digital Medicine, Published online: 18 November 2025; doi:10.1038/s41746-025-02042-x
Large language models driven neural architecture search for universal and lightweight disease diagnosis on histopathology slide images-
cs.AI, q-bio.NC updates on arXiv.org
-
CLINB: A Climate Intelligence Benchmark for Foundational Models
arXiv:2511.11597v1 Announce Type: new Abstract: Evaluating how Large Language Models (LLMs) handle complex, specialized knowledge remains a critical challenge. We address this through the lens of climate change by introducing CLINB, a benchmark that assesses models on open-ended, grounded, multimodal question answering tasks with clear requirements for knowledge quality and evidential support. CLINB relies on a dataset of real users' questions and evaluation rubrics curated by leading climate s
CLINB: A Climate Intelligence Benchmark for Foundational Models
-
cs.AI, q-bio.NC updates on arXiv.org
-
End to End AI System for Surgical Gesture Sequence Recognition and Clinical Outcome Prediction
arXiv:2511.11899v1 Announce Type: new Abstract: Fine-grained analysis of intraoperative behavior and its impact on patient outcomes remain a longstanding challenge. We present Frame-to-Outcome (F2O), an end-to-end system that translates tissue dissection videos into gesture sequences and uncovers patterns associated with postoperative outcomes. Leveraging transformer-based spatial and temporal modeling and frame-wise classification, F2O robustly detects consecutive short (~2 seconds) gestures i
End to End AI System for Surgical Gesture Sequence Recognition and Clinical Outcome Prediction
-
cs.AI, q-bio.NC updates on arXiv.org
-
UpBench: A Dynamically Evolving Real-World Labor-Market Agentic Benchmark Framework Built for Human-Centric AI
arXiv:2511.12306v1 Announce Type: new Abstract: As large language model (LLM) agents increasingly undertake digital work, reliable frameworks are needed to evaluate their real-world competence, adaptability, and capacity for human collaboration. Existing benchmarks remain largely static, synthetic, or domain-limited, providing limited insight into how agents perform in dynamic, economically meaningful environments. We introduce UpBench, a dynamically evolving benchmark grounded in real jobs dra
UpBench: A Dynamically Evolving Real-World Labor-Market Agentic Benchmark Framework Built for Human-Centric AI
-
cs.AI, q-bio.NC updates on arXiv.org
-
Learning to Trust: Bayesian Adaptation to Varying Suggester Reliability in Sequential Decision Making
arXiv:2511.12378v1 Announce Type: new Abstract: Autonomous agents operating in sequential decision-making tasks under uncertainty can benefit from external action suggestions, which provide valuable guidance but inherently vary in reliability. Existing methods for incorporating such advice typically assume static and known suggester quality parameters, limiting practical deployment. We introduce a framework that dynamically learns and adapts to varying suggester reliability in partially observa
Learning to Trust: Bayesian Adaptation to Varying Suggester Reliability in Sequential Decision Making
-
cs.AI, q-bio.NC updates on arXiv.org
-
Multi-agent Self-triage System with Medical Flowcharts
arXiv:2511.12439v1 Announce Type: new Abstract: Online health resources and large language models (LLMs) are increasingly used as a first point of contact for medical decision-making, yet their reliability in healthcare remains limited by low accuracy, lack of transparency, and susceptibility to unverified information. We introduce a proof-of-concept conversational self-triage system that guides LLMs with 100 clinically validated flowcharts from the American Medical Association, providing a str
Multi-agent Self-triage System with Medical Flowcharts
-
cs.AI, q-bio.NC updates on arXiv.org
-
MiniGPT-Pancreas: Multimodal Large Language Model for Pancreas Cancer Classification and Detection
arXiv:2412.15925v1 Announce Type: cross Abstract: Problem: Pancreas radiological imaging is challenging due to the small size, blurred boundaries, and variability of shape and position of the organ among patients. Goal: In this work we present MiniGPT-Pancreas, a Multimodal Large Language Model (MLLM), as an interactive chatbot to support clinicians in pancreas cancer diagnosis by integrating visual and textual information. Methods: MiniGPT-v2, a general-purpose MLLM, was fine-tuned in a cascad
MiniGPT-Pancreas: Multimodal Large Language Model for Pancreas Cancer Classification and Detection
-
cs.AI, q-bio.NC updates on arXiv.org
-
MedFedPure: A Medical Federated Framework with MAE-based Detection and Diffusion Purification for Inference-Time Attacks
arXiv:2511.11625v1 Announce Type: cross Abstract: Artificial intelligence (AI) has shown great potential in medical imaging, particularly for brain tumor detection using Magnetic Resonance Imaging (MRI). However, the models remain vulnerable at inference time when they are trained collaboratively through Federated Learning (FL), an approach adopted to protect patient privacy. Adversarial attacks can subtly alter medical scans in ways invisible to the human eye yet powerful enough to mislead AI