arXiv:2511.17644v1 Announce Type: new Abstract: Artificial intelligence deployed in risk-sensitive domains such as healthcare, finance, and security must not only achieve predictive accuracy but also ensure transparency, ethical alignment, and compliance with regulatory expectations. Hybrid neuro symbolic models combine the pattern-recognition strengths of neural networks with the interpretability and logical rigor of symbolic reasoning, making them well-suited for these contexts. This paper surveys hybrid architectures, ethical design considerations, and deployment patterns that balance accuracy with accountability. We highlight techniques for integrating knowledge graphs with deep inference, embedding fairness-aware rules, and generating human-readable explanations. Through case studies in healthcare decision support, financial risk management, and autonomous infrastructure, we show how hybrid systems can deliver reliable and auditable AI. Finally, we outline evaluation protocols and future directions for scaling neuro symbolic frameworks in complex, high stakes environments.

arXiv:2511.18298v1 Announce Type: new Abstract: The exponential growth of scientific knowledge has created significant barriers to cross-disciplinary knowledge discovery, synthesis and research collaboration. In response to this challenge, we present BioSage, a novel compound AI architecture that integrates LLMs with RAG, orchestrated specialized agents and tools to enable discoveries across AI, data science, biomedical, and biosecurity domains. Our system features several specialized agents including the retrieval agent with query planning and response synthesis that enable knowledge retrieval across domains with citation-backed responses, cross-disciplinary translation agents that align specialized terminology and methodologies, and reasoning agents that synthesize domain-specific insights with transparency, traceability and usability. We demonstrate the effectiveness of our BioSage system through a rigorous evaluation on scientific benchmarks (LitQA2, GPQA, WMDP, HLE-Bio) and introduce a new cross-modal benchmark for biology and AI, showing that our BioSage agents outperform vanilla and RAG approaches by 13\%-21\% powered by Llama 3.1. 70B and GPT-4o models. We perform causal investigations into compound AI system behavior and report significant performance improvements by adding RAG and agents over the vanilla models. Unlike other systems, our solution is driven by user-centric design principles and orchestrates specialized user-agent interaction workflows supporting scientific activities including but not limited to summarization, research debate and brainstorming. Our ongoing work focuses on multimodal retrieval and reasoning over charts, tables, and structured scientific data, along with developing comprehensive multimodal benchmarks for cross-disciplinary discovery. Our compound AI solution demonstrates significant potential for accelerating scientific advancement by reducing barriers between traditionally siloed domains.

arXiv:2511.17658v1 Announce Type: cross Abstract: As digital communication grows in importance when connecting with healthcare providers, traditional behavioral and content message features are imbued with renewed significance. If one is to meaningfully connect with them, it is crucial to understand what drives them to engage and respond. In this study, the authors analyzed several million text messages sent through the Impiricus platform to learn which factors influenced whether or not a doctor clicked on a link in a message. Several key insights came to light through the use of logistic regression, random forest, and neural network models, the details of which the authors discuss in this paper.

arXiv:2511.18274v1 Announce Type: cross Abstract: Digital health interventions are increasingly used in physical and occupational therapy to deliver home exercise programs via sensor equipped devices such as smartphones, enabling remote monitoring of adherence and performance. However, digital interventions are typically programmed as software before clinical encounters as libraries of parametrized exercise modules targeting broad patient populations. At the point of care, clinicians can only select modules and adjust a narrow set of parameters like repetitions, so patient specific needs that emerge during encounters, such as distinct movement limitations, and home environments, are rarely reflected in the software. We evaluated a digital intervention paradigm that uses large language models (LLMs) to translate clinicians' exercise prescriptions into intervention software. In a prospective single arm feasibility study with 20 licensed physical and occupational therapists and a standardized patient, clinicians created 40 individualized upper extremity programs (398 instructions) that were automatically translated into executable software. Our results show a 45% increase in the proportion of personalized prescriptions that can be implemented as software compared with a template based benchmark, with unanimous consensus among therapists on ease of use. The LLM generated software correctly delivered 99.78% (397/398) of instructions as prescribed and monitored performance with 88.4% (352/398) accuracy, with 90% (18/20) of therapists judged it safe to interact with patients, and 75% (15/20) expressed willingness to adopt it. To our knowledge, this is the first prospective evaluation of clinician directed intervention software generation with LLMs in healthcare, demonstrating feasibility and motivating larger trials to assess clinical effectiveness and safety in real patient populations.

arXiv:2511.18334v1 Announce Type: cross Abstract: Urinary tract infection (UTI) flare-ups pose a significant health risk for older adults with chronic conditions. These infections often go unnoticed until they become severe, making early detection through innovative smart home technologies crucial. Traditional machine learning (ML) approaches relying on simple binary classification for UTI detection offer limited utility to nurses and practitioners as they lack insight into prediction uncertainty, hindering informed clinical decision-making. This paper presents a clinician-in-the-loop (CIL) smart home system that leverages ambient sensor data to extract meaningful behavioral markers, train robust predictive ML models, and calibrate them to enable uncertainty-aware decision support. The system incorporates a statistically valid uncertainty quantification method called Conformal-Calibrated Interval (CCI), which quantifies uncertainty and abstains from making predictions ("I don't know") when the ML model's confidence is low. Evaluated on real-world data from eight smart homes, our method outperforms baseline methods in recall and other classification metrics while maintaining the lowest abstention proportion and interval width. A survey of 42 nurses confirms that our system's outputs are valuable for guiding clinical decision-making, underscoring their practical utility in improving informed decisions and effectively managing UTIs and other condition flare-ups in older adults.

arXiv:2511.18622v1 Announce Type: cross Abstract: We present OpenGloss, a synthetic encyclopedic dictionary and semantic knowledge graph for English that integrates lexicographic definitions, encyclopedic context, etymological histories, and semantic relationships in a unified resource. OpenGloss contains 537K senses across 150K lexemes, on par with WordNet 3.1 and Open English WordNet, while providing more than four times as many sense definitions. These lexemes include 9.1M semantic edges, 1M usage examples, 3M collocations, and 60M words of encyclopedic content. Generated through a multi-agent procedural generation pipeline with schema-validated LLM outputs and automated quality assurance, the entire resource was produced in under one week for under $1,000. This demonstrates that structured generation can create comprehensive lexical resources at cost and time scales impractical for manual curation, enabling rapid iteration as foundation models improve. The resource addresses gaps in pedagogical applications by providing integrated content -- definitions, examples, collocations, encyclopedias, etymology -- that supports both vocabulary learning and natural language processing tasks. As a synthetically generated resource, OpenGloss reflects both the capabilities and limitations of current foundation models. The dataset is publicly available on Hugging Face under CC-BY 4.0, enabling researchers and educators to build upon and adapt this resource.

arXiv:2511.18635v1 Announce Type: cross Abstract: Large Language Models (LLMs) inherit societal biases from their training data, potentially leading to harmful or unfair outputs. While various techniques aim to mitigate these biases, their effects are often evaluated only along the dimension of the bias being targeted. This work investigates the cross-category consequences of targeted bias mitigation. We study four bias mitigation techniques applied across ten models from seven model families, and we explore racial, religious, profession- and gender-related biases. We measure the impact of debiasing on model coherence and stereotypical preference using the StereoSet benchmark. Our results consistently show that while targeted mitigation can sometimes reduce bias in the intended dimension, it frequently leads to unintended and often negative consequences in others, such as increasing model bias and decreasing general coherence. These findings underscore the critical need for robust, multi-dimensional evaluation tools when examining and developing bias mitigation strategies to avoid inadvertently shifting or worsening bias along untargeted axes.

arXiv:2511.18640v1 Announce Type: cross Abstract: Frontier artificial intelligence (AI) models, such as OpenAI's GPT-5 and Meta's DINOv3, have advanced rapidly through training on internet-scale public data, yet such systems lack access to private clinical data. Neuroimaging, in particular, is underrepresented in the public domain due to identifiable facial features within MRI and CT scans, fundamentally restricting model performance in clinical medicine. Here, we show that frontier models underperform on neuroimaging tasks and that learning directly from uncurated data generated during routine clinical care at health systems, a paradigm we call health system learning, yields high-performance, generalist neuroimaging models. We introduce NeuroVFM, a visual foundation model trained on 5.24 million clinical MRI and CT volumes using a scalable volumetric joint-embedding predictive architecture. NeuroVFM learns comprehensive representations of brain anatomy and pathology, achieving state-of-the-art performance across multiple clinical tasks, including radiologic diagnosis and report generation. The model exhibits emergent neuroanatomic understanding and interpretable visual grounding of diagnostic findings. When paired with open-source language models through lightweight visual instruction tuning, NeuroVFM generates radiology reports that surpass frontier models in accuracy, clinical triage, and expert preference. Through clinically grounded visual understanding, NeuroVFM reduces hallucinated findings and critical errors, offering safer clinical decision support. These results establish health system learning as a paradigm for building generalist medical AI and provide a scalable framework for clinical foundation models.

arXiv:2511.19220v1 Announce Type: cross Abstract: Large vision language models (VLMs) have achieved impressive performance on medical visual question answering benchmarks, yet their reliance on visual information remains unclear. We investigate whether frontier VLMs demonstrate genuine visual grounding when answering Italian medical questions by testing four state-of-the-art models: Claude Sonnet 4.5, GPT-4o, GPT-5-mini, and Gemini 2.0 flash exp. Using 60 questions from the EuropeMedQA Italian dataset that explicitly require image interpretation, we substitute correct medical images with blank placeholders to test whether models truly integrate visual and textual information. Our results reveal striking variability in visual dependency: GPT-4o shows the strongest visual grounding with a 27.9pp accuracy drop (83.2% [74.6%, 91.7%] to 55.3% [44.1%, 66.6%]), while GPT-5-mini, Gemini, and Claude maintain high accuracy with modest drops of 8.5pp, 2.4pp, and 5.6pp respectively. Analysis of model-generated reasoning reveals confident explanations for fabricated visual interpretations across all models, suggesting varying degrees of reliance on textual shortcuts versus genuine visual analysis. These findings highlight critical differences in model robustness and the need for rigorous evaluation before clinical deployment.

arXiv:2508.02744v2 Announce Type: replace Abstract: The rapid advancement of Large Language Models (LLMs) has driven novel applications across diverse domains, with LLM-based agents emerging as a crucial area of exploration. This survey presents a comprehensive analysis of LLM-based agents designed for data science tasks, summarizing insights from recent studies. From the agent perspective, we discuss the key design principles, covering agent roles, execution, knowledge, and reflection methods. From the data science perspective, we identify key processes for LLM-based agents, including data preprocessing, model development, evaluation, visualization, etc. Our work offers two key contributions: (1) a comprehensive review of recent developments in applying LLMbased agents to data science tasks; (2) a dual-perspective framework that connects general agent design principles with the practical workflows in data science.

arXiv:2511.11030v3 Announce Type: replace-cross Abstract: Artificial intelligence is revealing what medicine never intended to encode. Deep vision models, trained on chest X-rays, can now detect not only disease but also invisible traces of social inequality. In this study, we show that state-of-the-art architectures (DenseNet121, SwinV2-B, MedMamba) can predict a patient's health insurance type, a strong proxy for socioeconomic status, from normal chest X-rays with significant accuracy (AUC around 0.67 on MIMIC-CXR-JPG, 0.68 on CheXpert). The signal persists even when age, race, and sex are controlled for, and remains detectable when the model is trained exclusively on a single racial group. Patch-based occlusion reveals that the signal is diffuse rather than localized, embedded in the upper and mid-thoracic regions. This suggests that deep networks may be internalizing subtle traces of clinical environments, equipment differences, or care pathways; learning socioeconomic segregation itself. These findings challenge the assumption that medical images are neutral biological data. By uncovering how models perceive and exploit these hidden social signatures, this work reframes fairness in medical AI: the goal is no longer only to balance datasets or adjust thresholds, but to interrogate and disentangle the social fingerprints embedded in clinical data itself.

arXiv:2511.16203v2 Announce Type: replace-cross Abstract: Vision-Language-Action models (VLAs) have recently demonstrated remarkable progress in embodied environments, enabling robots to perceive, reason, and act through unified multimodal understanding. Despite their impressive capabilities, the adversarial robustness of these systems remains largely unexplored, especially under realistic multimodal and black-box conditions. Existing studies mainly focus on single-modality perturbations and overlook the cross-modal misalignment that fundamentally affects embodied reasoning and decision-making. In this paper, we introduce VLA-Fool, a comprehensive study of multimodal adversarial robustness in embodied VLA models under both white-box and black-box settings. VLA-Fool unifies three levels of multimodal adversarial attacks: (1) textual perturbations through gradient-based and prompt-based manipulations, (2) visual perturbations via patch and noise distortions, and (3) cross-modal misalignment attacks that intentionally disrupt the semantic correspondence between perception and instruction. We further incorporate a VLA-aware semantic space into linguistic prompts, developing the first automatically crafted and semantically guided prompting framework. Experiments on the LIBERO benchmark using a fine-tuned OpenVLA model reveal that even minor multimodal perturbations can cause significant behavioral deviations, demonstrating the fragility of embodied multimodal alignment.

arXiv:2511.16997v1 Announce Type: new Abstract: The emergence of AI Scientists has demonstrated remarkable potential in automating scientific research. However, current approaches largely conceptualize scientific discovery as a solitary optimization or search process, overlooking that knowledge production is inherently a social and historical endeavor. Human scientific insight stems from two distinct yet interconnected sources. First is the individual cognitive trajectory, where a researcher's unique insight is shaped by their evolving research history and stylistic preferences; another is the collective disciplinary memory, where knowledge is sedimented into vast, interconnected networks of citations and concepts. Existing LLMs still struggle to represent these structured, high-fidelity cognitive and social contexts. To bridge this gap, we introduce MirrorMind, a hierarchical cognitive architecture that integrates dual-memory representations within a three-level framework. The Individual Level constructs high-fidelity cognitive models of individual researchers by capturing their episodic, semantic, and persona memories; the Domain Level maps collective knowledge into structured disciplinary concept graphs; and the Interdisciplinary Level that acts as an orthogonal orchestration engine. Crucially, our architecture separates memory storage from agentic execution, enabling AI scientist agents to flexibly access individual memories for unique perspectives or collective structures to reason. We evaluate MirrorMind across four comprehensive tasks, including author-level cognitive simulation, complementary reasoning, cross-disciplinary collaboration promotion, and multi-agent scientific problem solving. The results show that by integrating individual cognitive depth with collective disciplinary breadth, MirrorMind moves beyond simple fact retrieval toward structural, personalized, and insight-generating scientific reasoning.

arXiv:2511.16698v1 Announce Type: cross Abstract: SNOMED CT is a biomedical ontology with a hierarchical representation of large-scale concepts. Knowledge retrieval in SNOMED CT is critical for its application, but often proves challenging due to language ambiguity, synonyms, polysemies and so on. This problem is exacerbated when the queries are out-of-vocabulary (OOV), i.e., having no equivalent matchings in the ontology. In this work, we focus on the problem of hierarchical concept retrieval from SNOMED CT with OOV queries, and propose an approach based on language model-based ontology embeddings. For evaluation, we construct OOV queries annotated against SNOMED CT concepts, testing the retrieval of the most direct subsumers and their less relevant ancestors. We find that our method outperforms the baselines including SBERT and two lexical matching methods. While evaluated against SNOMED CT, the approach is generalisable and can be extended to other ontologies. We release code, tools, and evaluation datasets at https://github.com/jonathondilworth/HR-OOV.

arXiv:2511.16846v1 Announce Type: cross Abstract: Large language models (LLMs) frequently generate responses that are lengthy and verbose, filled with redundant or unnecessary details. This diminishes clarity and user satisfaction, and it increases costs for model developers, especially with well-known proprietary models that charge based on the number of output tokens. In this paper, we introduce a novel reference-free metric for evaluating the conciseness of responses generated by LLMs. Our method quantifies non-essential content without relying on gold standard references and calculates the average of three calculations: i) a compression ratio between the original response and an LLM abstractive summary; ii) a compression ratio between the original response and an LLM extractive summary; and iii) wordremoval compression, where an LLM removes as many non-essential words as possible from the response while preserving its meaning, with the number of tokens removed indicating the conciseness score. Experimental results demonstrate that our proposed metric identifies redundancy in LLM outputs, offering a practical tool for automated evaluation of response brevity in conversational AI systems without the need for ground truth human annotations.

arXiv:2511.17432v1 Announce Type: cross Abstract: Traditional evaluation metrics for textual and visual question answering, like ROUGE, METEOR, and Exact Match (EM), focus heavily on n-gram based lexical similarity, often missing the deeper semantic understanding needed for accurate assessment. While measures like BERTScore and MoverScore leverage contextual embeddings to address this limitation, they lack flexibility in balancing sentence-level and keyword-level semantics and ignore lexical similarity, which remains important. Large Language Model (LLM) based evaluators, though powerful, come with drawbacks like high costs, bias, inconsistency, and hallucinations. To address these issues, we introduce SMILE: Semantic Metric Integrating Lexical Exactness, a novel approach that combines sentence-level semantic understanding with keyword-level semantic understanding and easy keyword matching. This composite method balances lexical precision and semantic relevance, offering a comprehensive evaluation. Extensive benchmarks across text, image, and video QA tasks show SMILE is highly correlated with human judgments and computationally lightweight, bridging the gap between lexical and semantic evaluation.

arXiv:2503.01424v4 Announce Type: replace Abstract: Research is a fundamental process driving the advancement of human civilization, yet it demands substantial time and effort from researchers. In recent years, the rapid development of artificial intelligence (AI) technologies has inspired researchers to explore how AI can accelerate and enhance research. To monitor relevant advancements, this paper presents a systematic review of the progress in this domain. Specifically, we organize the relevant studies into three main categories: hypothesis formulation, hypothesis validation, and manuscript publication. Hypothesis formulation involves knowledge synthesis and hypothesis generation. Hypothesis validation includes the verification of scientific claims, theorem proving, and experiment validation. Manuscript publication encompasses manuscript writing and the peer review process. Furthermore, we identify and discuss the current challenges faced in these areas, as well as potential future directions for research. Finally, we also offer a comprehensive overview of existing benchmarks and tools across various domains that support the integration of AI into the research process. We hope this paper serves as an introduction for beginners and fosters future research. Resources have been made publicly available at https://github.com/zkzhou126/AI-for-Research.

arXiv:2504.07139v3 Announce Type: replace Abstract: Welcome to the eighth edition of the AI Index report. The 2025 Index is our most comprehensive to date and arrives at an important moment, as AI's influence across society, the economy, and global governance continues to intensify. New in this year's report are in-depth analyses of the evolving landscape of AI hardware, novel estimates of inference costs, and new analyses of AI publication and patenting trends. We also introduce fresh data on corporate adoption of responsible AI practices, along with expanded coverage of AI's growing role in science and medicine. Since its founding in 2017 as an offshoot of the One Hundred Year Study of Artificial Intelligence, the AI Index has been committed to equipping policymakers, journalists, executives, researchers, and the public with accurate, rigorously validated, and globally sourced data. Our mission has always been to help these stakeholders make better-informed decisions about the development and deployment of AI. In a world where AI is discussed everywhere - from boardrooms to kitchen tables - this mission has never been more essential. The AI Index continues to lead in tracking and interpreting the most critical trends shaping the field - from the shifting geopolitical landscape and the rapid evolution of underlying technologies, to AI's expanding role in business, policymaking, and public life. Longitudinal tracking remains at the heart of our mission. In a domain advancing at breakneck speed, the Index provides essential context - helping us understand where AI stands today, how it got here, and where it may be headed next. Recognized globally as one of the most authoritative resources on artificial intelligence, the AI Index has been cited in major media outlets such as The New York Times, Bloomberg, and The Guardian; referenced in hundreds of academic papers; and used by policymakers and government agencies around the world.

arXiv:2409.11393v3 Announce Type: replace-cross Abstract: In an era where vast amounts of data are collected and processed from diverse sources, there is a growing demand for sophisticated AI systems capable of intelligently fusing and analyzing this information. To address these challenges, researchers have turned towards integrating tools into LLM-powered agents to enhance the overall information fusion process. However, the conjunction of these technologies and the proposed enhancements in several state-of-the-art works followed a non-unified software architecture, resulting in a lack of modularity and terminological inconsistencies among researchers. To address these issues, we propose a novel LLM-based Agent Unified Modeling Framework (LLM-Agent-UMF) that establishes a clear foundation for agent development from both functional and software architectural perspectives, developed and evaluated using the Architecture Tradeoff and Risk Analysis Framework (ATRAF). Our framework clearly distinguishes between the different components of an LLM-based agent, setting LLMs and tools apart from a new element, the core-agent, which plays the role of central coordinator. This pivotal entity comprises five modules: planning, memory, profile, action, and security -- the latter often neglected in previous works. By classifying core-agents into passive and active types based on their authoritative natures, we propose various multi-core agent architectures that combine unique characteristics of distinctive agents to tackle complex tasks more efficiently. We evaluate our framework by applying it to thirteen state-of-the-art agents, thereby demonstrating its alignment with their functionalities and clarifying overlooked architectural aspects. Moreover, we thoroughly assess five architecture variants of our framework by designing new agent architectures that combine characteristics of state-of-the-art agents to address specific goals. ...

arXiv:2511.12797v2 Announce Type: replace-cross Abstract: In-context learning (ICL) -- the capacity of a model to infer and apply abstract patterns from examples provided within its input -- has been extensively studied in large language models trained for next-token prediction on human text. In fact, prior work often attributes this emergent behavior to distinctive statistical properties in human language. This raises a fundamental question: can ICL arise organically in other sequence domains purely through large-scale predictive training? To explore this, we turn to genomic sequences, an alternative symbolic domain rich in statistical structure. Specifically, we study the Evo2 genomic model, trained predominantly on next-nucleotide (A/T/C/G) prediction, at a scale comparable to mid-sized LLMs. We develop a controlled experimental framework comprising symbolic reasoning tasks instantiated in both linguistic and genomic forms, enabling direct comparison of ICL across genomic and linguistic models. Our results show that genomic models, like their linguistic counterparts, exhibit log-linear gains in pattern induction as the number of in-context demonstrations increases. To the best of our knowledge, this is the first evidence of organically emergent ICL in genomic sequences, supporting the hypothesis that ICL arises as a consequence of large-scale predictive modeling over rich data. These findings extend emergent meta-learning beyond language, pointing toward a unified, modality-agnostic view of in-context learning.