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cs.AI, q-bio.NC updates on arXiv.org
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AI Deception: Risks, Dynamics, and Controls
arXiv:2511.22619v2 Announce Type: replace Abstract: As intelligence increases, so does its shadow. AI deception, in which systems induce false beliefs to secure self-beneficial outcomes, has evolved from a speculative concern to an empirically demonstrated risk across language models, AI agents, and emerging frontier systems. This project provides a comprehensive and up-to-date overview of the AI deception field, covering its core concepts, methodologies, genesis, and potential mitigations. Fir
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Oncogenesis - nature.com science feeds
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RNA m5C methylation in cancer: mechanisms and biological impact
Oncogenesis, Published online: 21 November 2025; doi:10.1038/s41389-025-00587-wRNA m5C methylation in cancer: mechanisms and biological impact
RNA m5C methylation in cancer: mechanisms and biological impact
Oncogenesis, Published online: 21 November 2025; doi:10.1038/s41389-025-00587-w
RNA m5C methylation in cancer: mechanisms and biological impact-
cs.AI, q-bio.NC updates on arXiv.org
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From Cross-Task Examples to In-Task Prompts: A Graph-Based Pseudo-Labeling Framework for In-context Learning
arXiv:2510.24528v1 Announce Type: new Abstract: The capability of in-context learning (ICL) enables large language models (LLMs) to perform novel tasks without parameter updates by conditioning on a few input-output examples. However, collecting high-quality examples for new or challenging tasks can be costly and labor-intensive. In this work, we propose a cost-efficient two-stage pipeline that reduces reliance on LLMs for data labeling. Our approach first leverages readily available cross-task
From Cross-Task Examples to In-Task Prompts: A Graph-Based Pseudo-Labeling Framework for In-context Learning
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Comprehensive Bibliometric Analysis of Prediction Models for HCC: Current Trends and Future Prospects
J Gastrointest Cancer. 2025 Jun 19;56(1):139. doi: 10.1007/s12029-025-01249-1.ABSTRACTBACKGROUND: Hepatocellular carcinoma (HCC) is the most common primary malignant liver tumor, with rising incidence and mortality rates posing a significant threat to global public health. Accurate prediction of liver cancer occurrence and progression is essential for improving patient prognosis. This study uses bibliometric methods to analyze the current state and future trends in liver cancer prediction resear
Comprehensive Bibliometric Analysis of Prediction Models for HCC: Current Trends and Future Prospects
J Gastrointest Cancer. 2025 Jun 19;56(1):139. doi: 10.1007/s12029-025-01249-1.
ABSTRACT
BACKGROUND: Hepatocellular carcinoma (HCC) is the most common primary malignant liver tumor, with rising incidence and mortality rates posing a significant threat to global public health. Accurate prediction of liver cancer occurrence and progression is essential for improving patient prognosis. This study uses bibliometric methods to analyze the current state and future trends in liver cancer prediction research.
METHODS: A search was conducted in the Web of Science (WOS) database on October 22, 2023, identifying 1092 articles on liver cancer prediction. These articles were quantitatively analyzed using CiteSpace 6.2 software, with a focus on research hotspots, authors, countries, and keywords.
RESULTS: The study involved 114 countries, 4254 institutions, and 280 journals, with 48,788 citations. China (826 papers) and the USA (96 papers) dominate the field. Leading institutions include Sun Yat-sen University, Fudan University, Zhejiang University, and Yonsei University. The most cited journals were Hepatology (2209 citations) and Journal of Hepatology (946 citations). Frontiers in Oncology had the highest H-index (14). Key authors include Kim Seung Up (23 papers) and Ahn Sang Hoon (H-index = 14). Early research focused on risk factors and staging, while recent studies emphasize DNA methylation, immune microenvironments, and tumor metastasis. Future research will focus on multi-omics data integration and AI-driven predictive model optimization.
CONCLUSION: This study provides a comprehensive overview of liver cancer prediction research, highlighting key trends and the potential of multi-omics data and machine learning to enhance predictive models and clinical outcomes.
PMID:40537718 | DOI:10.1007/s12029-025-01249-1
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Cell Death Discovery nature.com science feeds
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OTUB1/NDUFS2 axis promotes pancreatic tumorigenesis through protecting against mitochondrial cell death
Cell Death Discovery, Published online: 23 April 2024; doi:10.1038/s41420-024-01948-xOTUB1/NDUFS2 axis promotes pancreatic tumorigenesis through protecting against mitochondrial cell death
OTUB1/NDUFS2 axis promotes pancreatic tumorigenesis through protecting against mitochondrial cell death
Cell Death Discovery, Published online: 23 April 2024; doi:10.1038/s41420-024-01948-x
OTUB1/NDUFS2 axis promotes pancreatic tumorigenesis through protecting against mitochondrial cell death-
Most Recent Articles: Clinical Epigenetics
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Identification of miR-20b-5p as an inhibitory regulator in cardiac differentiation via TET2 and DNA hydroxymethylation
Congenital heart disease (CHD) is a prevalent congenital cardiac malformation, which lacks effective early biological diagnosis and intervention. MicroRNAs, as epigenetic regulators of cardiac development, pro...
Identification of miR-20b-5p as an inhibitory regulator in cardiac differentiation via TET2 and DNA hydroxymethylation
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Nature Biotechnology - Issue - nature.com science feeds
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Fast mass spectrometry search and clustering of untargeted metabolomics data
Nature Biotechnology, Published online: 02 January 2024; doi:10.1038/s41587-023-01985-4MASST+ speeds up querying of metabolomics mass spectrometry data by two orders of magnitude.
Fast mass spectrometry search and clustering of untargeted metabolomics data
Nature Biotechnology, Published online: 02 January 2024; doi:10.1038/s41587-023-01985-4
MASST+ speeds up querying of metabolomics mass spectrometry data by two orders of magnitude.-
Nature Biotechnology - Issue - nature.com science feeds
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Simultaneous sequencing of genetic and epigenetic bases in DNA
Nature Biotechnology, Published online: 06 February 2023; doi:10.1038/s41587-022-01652-0A six-letter sequencing workflow can simultaneously detect genetic and epigenetic bases.
Simultaneous sequencing of genetic and epigenetic bases in DNA
Nature Biotechnology, Published online: 06 February 2023; doi:10.1038/s41587-022-01652-0
A six-letter sequencing workflow can simultaneously detect genetic and epigenetic bases.-
Nature - Issue - nature.com science feeds
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Common and rare variant associations with clonal haematopoiesis phenotypes
Nature, Published online: 30 November 2022; doi:10.1038/s41586-022-05448-9Exome sequence data from 628,388 individuals was used to identify 24 risk loci in 40,208 carriers of clonal haematopoiesis of indeterminate potential and link them to other conditions including COVID-19, cardiovascular disease and cancer.
Common and rare variant associations with clonal haematopoiesis phenotypes
Nature, Published online: 30 November 2022; doi:10.1038/s41586-022-05448-9
Exome sequence data from 628,388 individuals was used to identify 24 risk loci in 40,208 carriers of clonal haematopoiesis of indeterminate potential and link them to other conditions including COVID-19, cardiovascular disease and cancer.