Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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Does Less Hallucination Mean Less Creativity? An Empirical Investigation in LLMs
arXiv:2512.11509v1 Announce Type: cross Abstract: Large Language Models (LLMs) exhibit remarkable capabilities in natural language understanding and reasoning, but suffer from hallucination: the generation of factually incorrect content. While numerous methods have been developed to reduce hallucinations, their impact on creative generations remains unexplored. This gap is particularly critical for AI-assisted scientific discovery, which requires both factual accuracy and creative hypothesis ge
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cs.AI, q-bio.NC updates on arXiv.org
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From Verification Burden to Trusted Collaboration: Design Goals for LLM-Assisted Literature Reviews
arXiv:2512.11661v1 Announce Type: cross Abstract: Large Language Models (LLMs) are increasingly embedded in academic writing practices. Although numerous studies have explored how researchers employ these tools for scientific writing, their concrete implementation, limitations, and design challenges within the literature review process remain underexplored. In this paper, we report a user study with researchers across multiple disciplines to characterize current practices, benefits, and \textit
From Verification Burden to Trusted Collaboration: Design Goals for LLM-Assisted Literature Reviews
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cs.AI, q-bio.NC updates on arXiv.org
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Multimodal Learning for Scalable Representation of High-Dimensional Medical Data
arXiv:2409.13115v2 Announce Type: replace-cross Abstract: Integrating artificial intelligence (AI) with healthcare data is rapidly transforming medical diagnostics and driving progress toward precision medicine. However, effectively leveraging multimodal data, particularly digital pathology whole slide images (WSIs) and genomic sequencing, remains a significant challenge due to the intrinsic heterogeneity of these modalities and the need for scalable and interpretable frameworks. Existing diagn
Multimodal Learning for Scalable Representation of High-Dimensional Medical Data
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cs.AI, q-bio.NC updates on arXiv.org
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Benchmarking AI Models in Software Engineering: A Review, Search Tool, and Unified Approach for Elevating Benchmark Quality
arXiv:2503.05860v3 Announce Type: replace-cross Abstract: Benchmarks are essential for unified evaluation and reproducibility. The rapid rise of Artificial Intelligence for Software Engineering (AI4SE) has produced numerous benchmarks for tasks such as code generation and bug repair. However, this proliferation has led to major challenges: (1) fragmented knowledge across tasks, (2) difficulty in selecting contextually relevant benchmarks, (3) lack of standardization in benchmark creation, and (
Benchmarking AI Models in Software Engineering: A Review, Search Tool, and Unified Approach for Elevating Benchmark Quality
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cs.AI, q-bio.NC updates on arXiv.org
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Understanding Prompt Management in GitHub Repositories: A Call for Best Practices
arXiv:2509.12421v2 Announce Type: replace-cross Abstract: The rapid adoption of foundation models (e.g., large language models) has given rise to promptware, i.e., software built using natural language prompts. Effective management of prompts, such as organization and quality assurance, is essential yet challenging. In this study, we perform an empirical analysis of 24,800 open-source prompts from 92 GitHub repositories to investigate prompt management practices and quality attributes. Our find
Understanding Prompt Management in GitHub Repositories: A Call for Best Practices
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cs.AI, q-bio.NC updates on arXiv.org
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MetaVoxel: Joint Diffusion Modeling of Imaging and Clinical Metadata
arXiv:2512.10041v2 Announce Type: replace-cross Abstract: Modern deep learning methods have achieved impressive results across tasks from disease classification, estimating continuous biomarkers, to generating realistic medical images. Most of these approaches are trained to model conditional distributions defined by a specific predictive direction with a specific set of input variables. We introduce MetaVoxel, a generative joint diffusion modeling framework that models the joint distribution o
MetaVoxel: Joint Diffusion Modeling of Imaging and Clinical Metadata
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Omics In Lung
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High-Throughput Dissection of Inter-Organ Genetic Networks: A Multi-Omic Systems Biology Approach
SLAS Technol. 2025 Dec 11:100376. doi: 10.1016/j.slast.2025.100376. Online ahead of print.ABSTRACTThe existing multi-omic analyses are frequently confined to individual tissues, and the regulatory picture of the systemic regulator of complex physiology and disease is hidden. To fill this gap, we have created a unified systems biology model of the high-throughput dissection of inter-organ genetic networks. Our model incorporates transcriptomic, epigenomic and proteomic analysis of five major orga
High-Throughput Dissection of Inter-Organ Genetic Networks: A Multi-Omic Systems Biology Approach
SLAS Technol. 2025 Dec 11:100376. doi: 10.1016/j.slast.2025.100376. Online ahead of print.
ABSTRACT
The existing multi-omic analyses are frequently confined to individual tissues, and the regulatory picture of the systemic regulator of complex physiology and disease is hidden. To fill this gap, we have created a unified systems biology model of the high-throughput dissection of inter-organ genetic networks. Our model incorporates transcriptomic, epigenomic and proteomic analysis of five major organs (liver, kidney, heart, lung, brain) using the Multi-Omics Factor Analysis (MOFA+) tool, specifically, cross-tissue coordination. We characterized 27 evidence-heavy cross-tissue modules (FDR < 0.05) that are major hubs such as *HNF4Aenda NRF2cheng8loadmasterregulatingconstitutionembryonicstemcellularinfoncogenes recognize them. One notable observation was liver-kidney metabolic axis, significant cross-talks in hepatocyte organoids are confirmed with CRISPR knockdown, which suppresses the expression of transporters expressed by the kidney. Our work offers a scalable validated framework that goes beyond organ-centric perspectives, which can be used as a potent tool of systemic disease modelling and precision medicine.
PMID:41389879 | DOI:10.1016/j.slast.2025.100376
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Latest Science News -- ScienceDaily
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A grad student’s wild idea triggers a major aging breakthrough
Senescent “zombie” cells are linked to aging and multiple diseases, but spotting them in living tissue has been notoriously difficult. Researchers at Mayo Clinic have now taken an inventive leap by using aptamers—tiny, shape-shifting DNA molecules—to selectively tag these elusive cells. The project began as an offbeat conversation between two graduate students and quickly evolved into a collaborative, cross-lab effort that uncovered aptamers capable of binding to unique surface proteins on senes
A grad student’s wild idea triggers a major aging breakthrough
Back to the Future of Primary Care
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JAMA Health Forum New Online
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Poor Mental Health and the Use of Buy Now, Pay Later Loans
This cross-sectional study examines the association between buy now, pay later loans and probable depression, anxiety, and posttraumatic stress.
Poor Mental Health and the Use of Buy Now, Pay Later Loans
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Journal of Medical Internet Research
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Stakeholder Criteria for Trust in Artificial Intelligence–Based Computer Perception Tools in Health Care: Qualitative Interview Study
Background: Computer perception (CP) technologies hold significant promise for advancing precision mental health care systems, given their ability to leverage algorithmic analysis of continuous, passive sensing data from wearables and smartphones (eg, behavioral activity, geolocation, vocal features, and ambient environmental data) to infer clinically meaningful behavioral and physiological states. However, successful implementation critically depends on cultivating well-founded stakeholder trus
Stakeholder Criteria for Trust in Artificial Intelligence–Based Computer Perception Tools in Health Care: Qualitative Interview Study
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npj Digital Medicine
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Legal implications of AI standard of care integration on patients’ informed consent: lessons from surgery
npj Digital Medicine, Published online: 13 December 2025; doi:10.1038/s41746-025-02157-1Legal implications of AI standard of care integration on patients’ informed consent: lessons from surgery
Legal implications of AI standard of care integration on patients’ informed consent: lessons from surgery
npj Digital Medicine, Published online: 13 December 2025; doi:10.1038/s41746-025-02157-1
Legal implications of AI standard of care integration on patients’ informed consent: lessons from surgery-
AI News

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AI in 2026: Experimental AI concludes as autonomous systems rise
Generative AI’s experimental phase is concluding, making way for truly autonomous systems in 2026 that act rather than merely summarise. 2026 will lose the focus on model parameters and be about agency, energy efficiency, and the ability to navigate complex industrial environments. The next twelve months represent a departure from chatbots toward autonomous systems executing workflows with minimal oversight; forcing organisations to rethink infrastructure, governance, and talent management.
AI in 2026: Experimental AI concludes as autonomous systems rise
Generative AI’s experimental phase is concluding, making way for truly autonomous systems in 2026 that act rather than merely summarise.
2026 will lose the focus on model parameters and be about agency, energy efficiency, and the ability to navigate complex industrial environments. The next twelve months represent a departure from chatbots toward autonomous systems executing workflows with minimal oversight; forcing organisations to rethink infrastructure, governance, and talent management.
Autonomous AI systems take the wheel
Hanen Garcia, Chief Architect for Telecommunications at Red Hat, argues that while 2025 was defined by experimentation, the coming year marks a “decisive pivot towards agentic AI, autonomous software entities capable of reasoning, planning, and executing complex workflows without constant human intervention.”
Telecoms and heavy industry are the proving grounds. Garcia points to a trajectory toward autonomous network operations (ANO), moving beyond simple automation to self-configuring and self-healing systems. The business goal is to reverse commoditisation by “prioritising intelligence over pure infrastructure” and reduce operating expenditures.
Technologically, service providers are deploying multiagent systems (MAS). Rather than relying on a single model, these allow distinct agents to collaborate on multi-step tasks, handling complex interactions autonomously. However, increased autonomy introduces new threats.
Emmet King, Founding Partner of J12 Ventures, warns that “as AI agents gain the ability to autonomously execute tasks, hidden instructions embedded in images and workflows become potential attack vectors.” Security priorities must therefore shift from endpoint protection to “governing and auditing autonomous AI actions.”
As organisations scale these autonomous AI workloads, they hit a physical wall: power.
King argues energy availability, rather than model access, will determine which startups scale. “Compute scarcity is now a function of grid capacity,” King states, suggesting energy policy will become the de facto AI policy in Europe.
KPIs must adapt. Sergio Gago, CTO at Cloudera, predicts enterprises will prioritise energy efficiency as a primary metric. “The new competitive edge won’t come from the largest models, but from the most intelligent, efficient use of resources.”
Horizontal copilots lacking domain expertise or proprietary data will fail ROI tests as buyers measure real productivity. The “clearest enterprise ROI” will emerge from manufacturing, logistics, and advanced engineering—sectors where AI integrates into high-value workflows rather than consumer-facing interfaces.
AI ends the static app in 2026
Software consumption is changing too. Chris Royles, Field CTO for EMEA at Cloudera, suggests the traditional concept of an “app” is becoming fluid. “In 2026, AI will start to radically change the way we think about apps, how they function and how they’re built.”
Users will soon request temporary modules generated by code and a prompt, effectively replacing dedicated applications. “Once that function has served its purpose, it closes,” Royles explains, noting these “disposable” apps can be built and rebuilt in seconds.
Rigorous governance is required here; organisations need visibility into the reasoning processes used to create these modules to ensure errors are corrected safely.
Data storage faces a similar reckoning, especially as AI becomes more autonomous. Wim Stoop, Director of Product Marketing at Cloudera, believes the era of “digital hoarding” is ending as storage capacity hits its limit.
“AI-generated data will become disposable, created and refreshed on demand rather than stored indefinitely,” Stoop predicts. Verified, human-generated data will rise in value while synthetic content is discarded.
Specialist AI governance agents will pick up the slack. These “digital colleagues” will continuously monitor and secure data, allowing humans to “govern the governance” rather than enforcing individual rules. For example, a security agent could automatically adjust access permissions as new data enters the environment without human intervention.
Sovereignty and the human element
Sovereignty remains a pressing concern for European IT. Red Hat’s survey data indicates 92 percent of IT and AI leaders in EMEA view enterprise open-source software as vital for achieving sovereignty. Providers will leverage existing data centre footprints to offer sovereign AI solutions, ensuring data remains within specific jurisdictions to meet compliance demands.
Emmet King, Founding Partner of J12 Ventures, adds that competitive advantage is moving from owning models to “controlling training pipelines and energy supply,” with open-source advancements allowing more actors to run frontier-scale workloads.
Workforce integration is becoming personal. Nick Blasi, Co-Founder of Personos, argues tools ignoring human nuance – tone, temperament, and personality – will soon feel obsolete. By 2026, Blasi predicts “half of workplace conflict will be flagged by AI before managers know it exists.”
These systems will focus on “communication, influence, trust, motivation, and conflict resolution,” Blasi suggests, adding that personality science will become the “operating system” for the next generation of autonomous AI, offering grounded understanding of human individuality rather than generic recommendations.
The era of the “thin wrapper” is over. Buyers are now measuring real productivity, exposing tools built on hype rather than proprietary data. For the enterprise, competitive advantage will no longer come from renting access to a model, but from controlling the training pipelines and energy supply that power it.
See also: BBVA embeds AI into banking workflows using ChatGPT Enterprise

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Nature - Issue - nature.com science feeds
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China leads research in 90% of crucial technologies — a dramatic shift this century
Nature, Published online: 12 December 2025; doi:10.1038/d41586-025-04048-7The United States tops the remaining areas in an assessment of 74 technologies.
China leads research in 90% of crucial technologies — a dramatic shift this century
Nature, Published online: 12 December 2025; doi:10.1038/d41586-025-04048-7
The United States tops the remaining areas in an assessment of 74 technologies.-
(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Mapping the inflammatory origins of lung cancer
Cancer Cell. 2025 Dec 11:S1535-6108(25)00498-2. doi: 10.1016/j.ccell.2025.11.005. Online ahead of print.ABSTRACTHow early precursor cells and their surrounding microenvironment cooperate to drive oncogenic progression in lung adenocarcinoma (LUAD) remains elusive. In this issue of Cancer Cell, Peng et al. conducted multimodal spatial-omics to comprehensively profile precancerous lung and LUAD tissues, uncovering alveolar progenitors and proinflammatory niches that co-evolve during cancer progres
Mapping the inflammatory origins of lung cancer
Cancer Cell. 2025 Dec 11:S1535-6108(25)00498-2. doi: 10.1016/j.ccell.2025.11.005. Online ahead of print.
ABSTRACT
How early precursor cells and their surrounding microenvironment cooperate to drive oncogenic progression in lung adenocarcinoma (LUAD) remains elusive. In this issue of Cancer Cell, Peng et al. conducted multimodal spatial-omics to comprehensively profile precancerous lung and LUAD tissues, uncovering alveolar progenitors and proinflammatory niches that co-evolve during cancer progression.
PMID:41386222 | DOI:10.1016/j.ccell.2025.11.005
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Application progress of spatial omics in hepatobiliary tumor research
Hepatobiliary Surg Nutr. 2025 Dec 1;14(6):1028-1030. doi: 10.21037/hbsn-2025-aw-862. Epub 2025 Nov 25.NO ABSTRACTPMID:41383666 | PMC:PMC12690317 | DOI:10.21037/hbsn-2025-aw-862
Application progress of spatial omics in hepatobiliary tumor research
Hepatobiliary Surg Nutr. 2025 Dec 1;14(6):1028-1030. doi: 10.21037/hbsn-2025-aw-862. Epub 2025 Nov 25.
NO ABSTRACT
PMID:41383666 | PMC:PMC12690317 | DOI:10.21037/hbsn-2025-aw-862
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Exploring the role of lipid metabolism genes in gastric cancer prognosis and tumor immune microenvironment
J Int Med Res. 2025 Dec;53(12):3000605251403252. doi: 10.1177/03000605251403252. Epub 2025 Dec 11.ABSTRACTBackgroundGastric cancer remains a major global health challenge due to its high mortality rate and complex pathophysiological mechanisms. Emerging evidence highlights that dysregulated lipid metabolism contributes to gastric cancer progression and prognosis, but the associations between lipid metabolism-associated genes, gastric cancer patient survival, and tumor immune microenvironment rem
Exploring the role of lipid metabolism genes in gastric cancer prognosis and tumor immune microenvironment
J Int Med Res. 2025 Dec;53(12):3000605251403252. doi: 10.1177/03000605251403252. Epub 2025 Dec 11.
ABSTRACT
BackgroundGastric cancer remains a major global health challenge due to its high mortality rate and complex pathophysiological mechanisms. Emerging evidence highlights that dysregulated lipid metabolism contributes to gastric cancer progression and prognosis, but the associations between lipid metabolism-associated genes, gastric cancer patient survival, and tumor immune microenvironment remodeling are not fully elucidated.MethodsWe analyzed publicly available omics and clinical data, including RNA sequencing data from 371 gastric cancer samples in The Cancer Genome Atlas database and 433 gastric cancer samples in the Gene Expression Omnibus database. We first curated the top 100 lipid metabolism-associated genes based on relevance scores. Then, univariate Cox regression was used to identify genes significantly associated with overall survival. Consensus clustering was applied to these survival-related genes to define gastric cancer molecular subtypes. Copy number variation analysis was performed to assess genomic alterations of these genes in tumor samples. A prognostic risk model was constructed using least absolute shrinkage and selection operator regression and validated via multivariate Cox regression. Immune infiltration analysis using CIBERSORT and ESTIMATE algorithms was conducted to explore associations between lipid metabolism-associated genes and tumor immune microenvironment characteristics.ResultsA total of 3911 differentially expressed genes were identified between gastric cancer and adjacent normal tissues. Among the top 100 lipid metabolism-associated genes, 43 were significantly linked to patient survival, most of which were considered as poor prognostic factors. Copy number variation analysis revealed frequent copy number gains of these genes in tumor samples. Consensus clustering stratified patients into two molecular subtypes (LMAGcluster A and LMAGcluster B), with LMAGcluster A showing significantly worse survival outcomes (median survival: 2.6 years vs. 8.3 years in LMAGcluster B, p < 0.001). LMAGcluster A was also characterized by elevated infiltration of pro-tumor immune cells, such as regulatory T cells and follicular helper T cells. The prognostic model based on 14 key lipid metabolism-associated genes exhibited robust predictive performance, with area under the receiver operating characteristic curve values of 0.702-0.761 in The Cancer Genome Atlas cohort and 0.621-0.638 in the Gene Expression Omnibus cohort for 1-, 3-, and 5-year survival.ConclusionLipid metabolism-associated genes are closely associated with gastric cancer prognosis and tumor immune microenvironment remodeling. The identified gene-based molecular subtypes and prognostic model provide novel insights into gastric cancer progression, and the 14 key genes may serve as potential biomarkers and therapeutic targets.
PMID:41381057 | DOI:10.1177/03000605251403252
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Latest Science News -- ScienceDaily
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AI finds a surprising monkeypox weak spot that could rewrite vaccines
Researchers used AI to pinpoint a little-known monkeypox protein that provokes strong protective antibodies. When the team tested this protein as a vaccine ingredient in mice, it produced a potent immune response. The discovery could lead to simpler, more effective mpox vaccines and therapies. It may also help guide future efforts against smallpox.
AI finds a surprising monkeypox weak spot that could rewrite vaccines
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Nature Medicine
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Cancer screening must become more precise
Nature Medicine, Published online: 12 December 2025; doi:10.1038/s41591-025-04148-xTo improve early detection, cancer screening studies need to evolve and integrate multimodal data in the identification of high-risk individuals.
Cancer screening must become more precise
Nature Medicine, Published online: 12 December 2025; doi:10.1038/s41591-025-04148-x
To improve early detection, cancer screening studies need to evolve and integrate multimodal data in the identification of high-risk individuals.-
TechCrunch
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Trump’s AI executive order promises ‘one rulebook’ — startups may get legal limbo instead
Trump signed an AI executive order targeting state laws and promising one national rulebook. Critics warn it could trigger court battles and prolong uncertainty for startups while Congress debates federal rules.