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Robustness of Probabilistic Models to Low-Quality Data: A Multi-Perspective Analysis

arXiv:2512.11912v1 Announce Type: new Abstract: A systematic, comparative investigation into the effects of low-quality data reveals a stark spectrum of robustness across modern probabilistic models. We find that autoregressive language models, from token prediction to sequence-to-sequence tasks, are remarkably resilient (for GPT-2, test NLL increases modestly from 2.87 to 3.59 despite 50% token corruption). By contrast, under the same levels of data corruption, class-conditional diffusion models degrade catastrophically (image-label consistency plummets by 56.81% relative to baseline), while classifiers show a moderate impact that diminishes with dataset scale. To explain these discrepancies, we analyze the results through a multi-perspective lens, integrating information theory, PAC learning, and gradient dynamics. These analyses suggest that robustness is heavily influenced by two key principles: the richness of conditioning information, which constrains the learning problem, and the absolute information content of the training data, which allows the signal from correct information to dominate statistical noise.
  • ✇cs.AI, q-bio.NC updates on arXiv.org
  • Spiking Manifesto Eugene Izhikevich
    arXiv:2512.11843v1 Announce Type: cross Abstract: Practically everything computers do is better, faster, and more power-efficient than the brain. For example, a calculator crunches numbers more energy-efficiently than any human. Yet AI models are a thousand times less efficient than the brain. These models use artificial neural networks (ANNs) and require GPUs for the multiplication of huge matrices. In contrast, spiking neural networks (SNNs) of the brain have no matrix multiplication and much
     

Spiking Manifesto

arXiv:2512.11843v1 Announce Type: cross Abstract: Practically everything computers do is better, faster, and more power-efficient than the brain. For example, a calculator crunches numbers more energy-efficiently than any human. Yet AI models are a thousand times less efficient than the brain. These models use artificial neural networks (ANNs) and require GPUs for the multiplication of huge matrices. In contrast, spiking neural networks (SNNs) of the brain have no matrix multiplication and much smaller energy requirements. This manifesto proposes a framework for thinking about popular AI models in terms of spiking networks and polychronization, and for interpreting spiking activity as nature's way of implementing look-up tables. This offers a way to convert AI models into a novel type of architecture with the promise of a thousandfold improvement in efficiency. Code is available at https://github.com/izhikevich/SNN

UniMark: Artificial Intelligence Generated Content Identification Toolkit

arXiv:2512.12324v1 Announce Type: cross Abstract: The rapid proliferation of Artificial Intelligence Generated Content has precipitated a crisis of trust and urgent regulatory demands. However, existing identification tools suffer from fragmentation and a lack of support for visible compliance marking. To address these gaps, we introduce the \textbf{UniMark}, an open-source, unified framework for multimodal content governance. Our system features a modular unified engine that abstracts complexities across text, image, audio, and video modalities. Crucially, we propose a novel dual-operation strategy, natively supporting both \emph{Hidden Watermarking} for copyright protection and \emph{Visible Marking} for regulatory compliance. Furthermore, we establish a standardized evaluation framework with three specialized benchmarks (Image/Video/Audio-Bench) to ensure rigorous performance assessment. This toolkit bridges the gap between advanced algorithms and engineering implementation, fostering a more transparent and secure digital ecosystem.

Explainable AI as a Double-Edged Sword in Dermatology: The Impact on Clinicians versus The Public

arXiv:2512.12500v1 Announce Type: cross Abstract: Artificial intelligence (AI) is increasingly permeating healthcare, from physician assistants to consumer applications. Since AI algorithm's opacity challenges human interaction, explainable AI (XAI) addresses this by providing AI decision-making insight, but evidence suggests XAI can paradoxically induce over-reliance or bias. We present results from two large-scale experiments (623 lay people; 153 primary care physicians, PCPs) combining a fairness-based diagnosis AI model and different XAI explanations to examine how XAI assistance, particularly multimodal large language models (LLMs), influences diagnostic performance. AI assistance balanced across skin tones improved accuracy and reduced diagnostic disparities. However, LLM explanations yielded divergent effects: lay users showed higher automation bias - accuracy boosted when AI was correct, reduced when AI erred - while experienced PCPs remained resilient, benefiting irrespective of AI accuracy. Presenting AI suggestions first also led to worse outcomes when the AI was incorrect for both groups. These findings highlight XAI's varying impact based on expertise and timing, underscoring LLMs as a "double-edged sword" in medical AI and informing future human-AI collaborative system design.

Understanding Syllogistic Reasoning in LLMs from Formal and Natural Language Perspectives

arXiv:2512.12620v1 Announce Type: cross Abstract: We study syllogistic reasoning in LLMs from the logical and natural language perspectives. In process, we explore fundamental reasoning capabilities of the LLMs and the direction this research is moving forward. To aid in our studies, we use 14 large language models and investigate their syllogistic reasoning capabilities in terms of symbolic inferences as well as natural language understanding. Even though this reasoning mechanism is not a uniform emergent property across LLMs, the perfect symbolic performances in certain models make us wonder whether LLMs are becoming more and more formal reasoning mechanisms, rather than making explicit the nuances of human reasoning.

Cisco Integrated AI Security and Safety Framework Report

arXiv:2512.12921v1 Announce Type: cross Abstract: Artificial intelligence (AI) systems are being readily and rapidly adopted, increasingly permeating critical domains: from consumer platforms and enterprise software to networked systems with embedded agents. While this has unlocked potential for human productivity gains, the attack surface has expanded accordingly: threats now span content safety failures (e.g., harmful or deceptive outputs), model and data integrity compromise (e.g., poisoning, supply-chain tampering), runtime manipulations (e.g., prompt injection, tool and agent misuse), and ecosystem risks (e.g., orchestration abuse, multi-agent collusion). Existing frameworks such as MITRE ATLAS, National Institute of Standards and Technology (NIST) AI 100-2 Adversarial Machine Learning (AML) taxonomy, and OWASP Top 10s for Large Language Models (LLMs) and Agentic AI Applications provide valuable viewpoints, but each covers only slices of this multi-dimensional space. This paper presents Cisco's Integrated AI Security and Safety Framework ("AI Security Framework"), a unified, lifecycle-aware taxonomy and operationalization framework that can be used to classify, integrate, and operationalize the full range of AI risks. It integrates AI security and AI safety across modalities, agents, pipelines, and the broader ecosystem. The AI Security Framework is designed to be practical for threat identification, red-teaming, risk prioritization, and it is comprehensive in scope and can be extensible to emerging deployments in multimodal contexts, humanoids, wearables, and sensory infrastructures. We analyze gaps in prevailing frameworks, discuss design principles for our framework, and demonstrate how the taxonomy provides structure for understanding how modern AI systems fail, how adversaries exploit these failures, and how organizations can build defenses across the AI lifecycle that evolve alongside capability advancements.

Building from Scratch: A Multi-Agent Framework with Human-in-the-Loop for Multilingual Legal Terminology Mapping

arXiv:2512.12950v1 Announce Type: cross Abstract: Accurately mapping legal terminology across languages remains a significant challenge, especially for language pairs like Chinese and Japanese, which share a large number of homographs with different meanings. Existing resources and standardized tools for these languages are limited. To address this, we propose a human-AI collaborative approach for building a multilingual legal terminology database, based on a multi-agent framework. This approach integrates advanced large language models and legal domain experts throughout the entire process-from raw document preprocessing, article-level alignment, to terminology extraction, mapping, and quality assurance. Unlike a single automated pipeline, our approach places greater emphasis on how human experts participate in this multi-agent system. Humans and AI agents take on different roles: AI agents handle specific, repetitive tasks, such as OCR, text segmentation, semantic alignment, and initial terminology extraction, while human experts provide crucial oversight, review, and supervise the outputs with contextual knowledge and legal judgment. We tested the effectiveness of this framework using a trilingual parallel corpus comprising 35 key Chinese statutes, along with their English and Japanese translations. The experimental results show that this human-in-the-loop, multi-agent workflow not only improves the precision and consistency of multilingual legal terminology mapping but also offers greater scalability compared to traditional manual methods.

From User Interface to Agent Interface: Efficiency Optimization of UI Representations for LLM Agents

arXiv:2512.13438v1 Announce Type: cross Abstract: While Large Language Model (LLM) agents show great potential for automated UI navigation such as automated UI testing and AI assistants, their efficiency has been largely overlooked. Our motivating study reveals that inefficient UI representation creates a critical performance bottleneck. However, UI representation optimization, formulated as the task of automatically generating programs that transform UI representations, faces two unique challenges. First, the lack of Boolean oracles, which traditional program synthesis uses to decisively validate semantic correctness, poses a fundamental challenge to co-optimization of token efficiency and completeness. Second, the need to process large, complex UI trees as input while generating long, compositional transformation programs, making the search space vast and error-prone. Toward addressing the preceding limitations, we present UIFormer, the first automated optimization framework that synthesizes UI transformation programs by conducting constraint-based optimization with structured decomposition of the complex synthesis task. First, UIFormer restricts the program space using a domain-specific language (DSL) that captures UI-specific operations. Second, UIFormer conducts LLM-based iterative refinement with correctness and efficiency rewards, providing guidance for achieving the efficiency-completeness co-optimization. UIFormer operates as a lightweight plugin that applies transformation programs for seamless integration with existing LLM agents, requiring minimal modifications to their core logic. Evaluations across three UI navigation benchmarks spanning Android and Web platforms with five LLMs demonstrate that UIFormer achieves 48.7% to 55.8% token reduction with minimal runtime overhead while maintaining or improving agent performance. Real-world industry deployment at WeChat further validates the practical impact of UIFormer.

Generating Reliable Synthetic Clinical Trial Data: The Role of Hyperparameter Optimization and Domain Constraints

arXiv:2505.05019v2 Announce Type: replace-cross Abstract: The generation of synthetic clinical trial data offers a promising approach to mitigating privacy concerns and data accessibility limitations in medical research. However, ensuring that synthetic datasets maintain high fidelity, utility, and adherence to domain-specific constraints remains a key challenge. While hyperparameter optimization (HPO) improves generative model performance, the effectiveness of different optimization strategies for synthetic clinical data remains unclear. This study systematically evaluates four HPO objectives across nine generative models, comparing single-metric to compound metric optimization. Our results demonstrate that HPO consistently improves synthetic data quality, with Tab DDPM achieving the largest relative gains, followed by TVAE (60%), CTGAN (39%), and CTAB-GAN+ (38%). Compound metric optimization outperformed single-metric objectives, producing more generalizable synthetic datasets. Despite improving overall quality, HPO alone fails to prevent violations of essential clinical survival constraints. Preprocessing and postprocessing played a crucial role in reducing these violations, as models lacking robust processing steps produced invalid data in up to 61% of cases. These findings underscore the necessity of integrating explicit domain knowledge alongside HPO to generate high-quality synthetic datasets. Our study provides actionable recommendations for improving synthetic data generation, with future work needed to refine metric selection and validate findings on larger datasets.
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  • A Collectivist, Economic Perspective on AI Michael I. Jordan
    arXiv:2507.06268v3 Announce Type: replace-cross Abstract: Information technology is in the midst of a revolution in which omnipresent data collection and machine learning are impacting the human world as never before. The word ``intelligence'' is being used as a North Star for the development of this technology, with human cognition viewed as a baseline. This view neglects the fact that humans are social animals and that much of our intelligence is social and cultural in origin. Moreover, faili
     

A Collectivist, Economic Perspective on AI

arXiv:2507.06268v3 Announce Type: replace-cross Abstract: Information technology is in the midst of a revolution in which omnipresent data collection and machine learning are impacting the human world as never before. The word ``intelligence'' is being used as a North Star for the development of this technology, with human cognition viewed as a baseline. This view neglects the fact that humans are social animals and that much of our intelligence is social and cultural in origin. Moreover, failing to properly situate aspects of intelligence at the social level contributes to the treatment of the societal consequences of technology as an afterthought. The path forward is not merely more data and compute, and not merely more attention paid to cognitive or symbolic representations, but a thorough blending of economic and social concepts with computational and inferential concepts at the level of algorithm design.

Grounding Large Language Models in Clinical Evidence: A Retrieval-Augmented Generation System for Querying UK NICE Clinical Guidelines

arXiv:2510.02967v3 Announce Type: replace-cross Abstract: This paper presents the development and evaluation of a Retrieval-Augmented Generation (RAG) system for querying the United Kingdom's National Institute for Health and Care Excellence (NICE) clinical guidelines using Large Language Models (LLMs). The extensive length and volume of these guidelines can impede their utilisation within a time-constrained healthcare system, a challenge this project addresses through the creation of a system capable of providing users with precisely matched information in response to natural language queries. The system's retrieval architecture, composed of a hybrid embedding mechanism, was evaluated against a corpus of 10,195 text chunks derived from three hundred guidelines. It demonstrates high performance, with a Mean Reciprocal Rank (MRR) of 0.814, a Recall of 81% at the first chunk and of 99.1% within the top ten retrieved chunks, when evaluated on 7901 queries. The most significant impact of the RAG system was observed during the generation phase. When evaluated on a manually curated dataset of seventy question-answer pairs, RAG-enhanced models showed substantial gains in performance. Faithfulness, the measure of whether an answer is supported by the source text, was increased by 64.7 percentage points to 99.5% for the RAG-enhanced O4-Mini model and significantly outperformed the medical-focused Meditron3-8B LLM, which scored 43%. Clinical evaluation by seven Subject Matter Experts (SMEs) further validated these findings, with GPT-4.1 achieving 98.7% accuracy while reducing unsafe responses by 67% compared to O4-Mini (from 3.0 to 1.0 per evaluator). This study thus establishes RAG as an effective, reliable, and scalable approach for applying generative AI in healthcare, enabling cost-effective access to medical guidelines.
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  • Three Lenses on the AI Revolution: Risk, Transformation, Continuity Masoud Makrehchi
    arXiv:2510.12859v2 Announce Type: replace-cross Abstract: Artificial Intelligence (AI) has emerged as both a continuation of historical technological revolutions and a potential rupture with them. This paper argues that AI must be viewed simultaneously through three lenses: \textit{risk}, where it resembles nuclear technology in its irreversible and global externalities; \textit{transformation}, where it parallels the Industrial Revolution as a general-purpose technology driving productivity an
     

Three Lenses on the AI Revolution: Risk, Transformation, Continuity

arXiv:2510.12859v2 Announce Type: replace-cross Abstract: Artificial Intelligence (AI) has emerged as both a continuation of historical technological revolutions and a potential rupture with them. This paper argues that AI must be viewed simultaneously through three lenses: \textit{risk}, where it resembles nuclear technology in its irreversible and global externalities; \textit{transformation}, where it parallels the Industrial Revolution as a general-purpose technology driving productivity and reorganization of labor; and \textit{continuity}, where it extends the fifty-year arc of computing revolutions from personal computing to the internet to mobile. Drawing on historical analogies, we emphasize that no past transition constituted a strict singularity: disruptive shifts eventually became governable through new norms and institutions. We examine recurring patterns across revolutions -- democratization at the usage layer, concentration at the production layer, falling costs, and deepening personalization -- and show how these dynamics are intensifying in the AI era. Sectoral analysis illustrates how accounting, law, education, translation, advertising, and software engineering are being reshaped as routine cognition is commoditized and human value shifts to judgment, trust, and ethical responsibility. At the frontier, the challenge of designing moral AI agents highlights the need for robust guardrails, mechanisms for moral generalization, and governance of emergent multi-agent dynamics. We conclude that AI is neither a singular break nor merely incremental progress. It is both evolutionary and revolutionary: predictable in its median effects yet carrying singularity-class tail risks. Good outcomes are not automatic; they require coupling pro-innovation strategies with safety governance, ensuring equitable access, and embedding AI within a human order of responsibility.
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  • Hierarchical Molecular Language Models (HMLMs) Hasi Hays · Yue Yu · William J. Richardson
    arXiv:2512.00696v3 Announce Type: replace-cross Abstract: Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecular Language Models (HMLMs), a novel framework that models cellular signaling as a specialized molecular language, where signaling molecules function as tokens, protein interactions define syntax, and functional consequences constitute semantics. HMLMs employ a t
     

Hierarchical Molecular Language Models (HMLMs)

arXiv:2512.00696v3 Announce Type: replace-cross Abstract: Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecular Language Models (HMLMs), a novel framework that models cellular signaling as a specialized molecular language, where signaling molecules function as tokens, protein interactions define syntax, and functional consequences constitute semantics. HMLMs employ a transformer-based architecture adapted to accommodate graph-structured signaling networks through information transducers, mathematical entities that capture how molecules receive, process, and transmit signals. The architecture integrates multi-modal data sources across molecular, pathway, and cellular scales through hierarchical attention mechanisms and scale-bridging operators that enable information flow across biological hierarchies. Applied to a complex network of cardiac fibroblast signaling, HMLMs outperformed traditional approaches in temporal dynamics prediction, particularly under sparse sampling conditions. Attention-based analysis revealed biologically meaningful crosstalk patterns, including previously uncharacterized interactions between signaling pathways. By bridging molecular mechanisms with cellular phenotypes through AI-driven molecular language representation, HMLMs establish a foundation for biology-oriented large language models (LLMs) that could be pre-trained on comprehensive pathway datasets and applied across diverse signaling systems and tissues, advancing precision medicine and therapeutic discovery.

Does Less Hallucination Mean Less Creativity? An Empirical Investigation in LLMs

arXiv:2512.11509v1 Announce Type: cross Abstract: Large Language Models (LLMs) exhibit remarkable capabilities in natural language understanding and reasoning, but suffer from hallucination: the generation of factually incorrect content. While numerous methods have been developed to reduce hallucinations, their impact on creative generations remains unexplored. This gap is particularly critical for AI-assisted scientific discovery, which requires both factual accuracy and creative hypothesis generation. We investigate how three hallucination-reduction techniques: Chain of Verification (CoVe), Decoding by Contrasting Layers (DoLa), and Retrieval-Augmented Generation (RAG), affect creativity in LLMs. Evaluating multiple model families (LLaMA, Qwen, Mistral) at varying scales (1B - 70B parameters) on two creativity benchmarks (NeoCoder and CS4), we find that these methods have opposing effects on divergent creativity. CoVe enhances divergent thinking, DoLa suppresses it, and RAG shows minimal impact. Our findings provide guidance for selecting appropriate hallucination-reduction methods in scientific applications, where the balance between factual accuracy and creative exploration is crucial.

From Verification Burden to Trusted Collaboration: Design Goals for LLM-Assisted Literature Reviews

arXiv:2512.11661v1 Announce Type: cross Abstract: Large Language Models (LLMs) are increasingly embedded in academic writing practices. Although numerous studies have explored how researchers employ these tools for scientific writing, their concrete implementation, limitations, and design challenges within the literature review process remain underexplored. In this paper, we report a user study with researchers across multiple disciplines to characterize current practices, benefits, and \textit{pain points} in using LLMs to investigate related work. We identified three recurring gaps: (i) lack of trust in outputs, (ii) persistent verification burden, and (iii) requiring multiple tools. This motivates our proposal of six design goals and a high-level framework that operationalizes them through improved related papers visualization, verification at every step, and human-feedback alignment with generation-guided explanations. Overall, by grounding our work in the practical, day-to-day needs of researchers, we designed a framework that addresses these limitations and models real-world LLM-assisted writing, advancing trust through verifiable actions and fostering practical collaboration between researchers and AI systems.

Understanding Prompt Management in GitHub Repositories: A Call for Best Practices

arXiv:2509.12421v2 Announce Type: replace-cross Abstract: The rapid adoption of foundation models (e.g., large language models) has given rise to promptware, i.e., software built using natural language prompts. Effective management of prompts, such as organization and quality assurance, is essential yet challenging. In this study, we perform an empirical analysis of 24,800 open-source prompts from 92 GitHub repositories to investigate prompt management practices and quality attributes. Our findings reveal critical challenges such as considerable inconsistencies in prompt formatting, substantial internal and external prompt duplication, and frequent readability and spelling issues. Based on these findings, we provide actionable recommendations for developers to enhance the usability and maintainability of open-source prompts within the rapidly evolving promptware ecosystem.

MetaVoxel: Joint Diffusion Modeling of Imaging and Clinical Metadata

arXiv:2512.10041v2 Announce Type: replace-cross Abstract: Modern deep learning methods have achieved impressive results across tasks from disease classification, estimating continuous biomarkers, to generating realistic medical images. Most of these approaches are trained to model conditional distributions defined by a specific predictive direction with a specific set of input variables. We introduce MetaVoxel, a generative joint diffusion modeling framework that models the joint distribution over imaging data and clinical metadata by learning a single diffusion process spanning all variables. By capturing the joint distribution, MetaVoxel unifies tasks that traditionally require separate conditional models and supports flexible zero-shot inference using arbitrary subsets of inputs without task-specific retraining. Using more than 10,000 T1-weighted MRI scans paired with clinical metadata from nine datasets, we show that a single MetaVoxel model can perform image generation, age estimation, and sex prediction, achieving performance comparable to established task-specific baselines. Additional experiments highlight its capabilities for flexible inference. Together, these findings demonstrate that joint multimodal diffusion offers a promising direction for unifying medical AI models and enabling broader clinical applicability.

High-Throughput Dissection of Inter-Organ Genetic Networks: A Multi-Omic Systems Biology Approach

SLAS Technol. 2025 Dec 11:100376. doi: 10.1016/j.slast.2025.100376. Online ahead of print.

ABSTRACT

The existing multi-omic analyses are frequently confined to individual tissues, and the regulatory picture of the systemic regulator of complex physiology and disease is hidden. To fill this gap, we have created a unified systems biology model of the high-throughput dissection of inter-organ genetic networks. Our model incorporates transcriptomic, epigenomic and proteomic analysis of five major organs (liver, kidney, heart, lung, brain) using the Multi-Omics Factor Analysis (MOFA+) tool, specifically, cross-tissue coordination. We characterized 27 evidence-heavy cross-tissue modules (FDR < 0.05) that are major hubs such as *HNF4Aenda NRF2cheng8loadmasterregulatingconstitutionembryonicstemcellularinfoncogenes recognize them. One notable observation was liver-kidney metabolic axis, significant cross-talks in hepatocyte organoids are confirmed with CRISPR knockdown, which suppresses the expression of transporters expressed by the kidney. Our work offers a scalable validated framework that goes beyond organ-centric perspectives, which can be used as a potent tool of systemic disease modelling and precision medicine.

PMID:41389879 | DOI:10.1016/j.slast.2025.100376

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