Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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Robustness of Probabilistic Models to Low-Quality Data: A Multi-Perspective Analysis
arXiv:2512.11912v1 Announce Type: new Abstract: A systematic, comparative investigation into the effects of low-quality data reveals a stark spectrum of robustness across modern probabilistic models. We find that autoregressive language models, from token prediction to sequence-to-sequence tasks, are remarkably resilient (for GPT-2, test NLL increases modestly from 2.87 to 3.59 despite 50% token corruption). By contrast, under the same levels of data corruption, class-conditional diffusion mode
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cs.AI, q-bio.NC updates on arXiv.org
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Spiking Manifesto
arXiv:2512.11843v1 Announce Type: cross Abstract: Practically everything computers do is better, faster, and more power-efficient than the brain. For example, a calculator crunches numbers more energy-efficiently than any human. Yet AI models are a thousand times less efficient than the brain. These models use artificial neural networks (ANNs) and require GPUs for the multiplication of huge matrices. In contrast, spiking neural networks (SNNs) of the brain have no matrix multiplication and much
Spiking Manifesto
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cs.AI, q-bio.NC updates on arXiv.org
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UniMark: Artificial Intelligence Generated Content Identification Toolkit
arXiv:2512.12324v1 Announce Type: cross Abstract: The rapid proliferation of Artificial Intelligence Generated Content has precipitated a crisis of trust and urgent regulatory demands. However, existing identification tools suffer from fragmentation and a lack of support for visible compliance marking. To address these gaps, we introduce the \textbf{UniMark}, an open-source, unified framework for multimodal content governance. Our system features a modular unified engine that abstracts complexi
UniMark: Artificial Intelligence Generated Content Identification Toolkit
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cs.AI, q-bio.NC updates on arXiv.org
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Explainable AI as a Double-Edged Sword in Dermatology: The Impact on Clinicians versus The Public
arXiv:2512.12500v1 Announce Type: cross Abstract: Artificial intelligence (AI) is increasingly permeating healthcare, from physician assistants to consumer applications. Since AI algorithm's opacity challenges human interaction, explainable AI (XAI) addresses this by providing AI decision-making insight, but evidence suggests XAI can paradoxically induce over-reliance or bias. We present results from two large-scale experiments (623 lay people; 153 primary care physicians, PCPs) combining a fai
Explainable AI as a Double-Edged Sword in Dermatology: The Impact on Clinicians versus The Public
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cs.AI, q-bio.NC updates on arXiv.org
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Understanding Syllogistic Reasoning in LLMs from Formal and Natural Language Perspectives
arXiv:2512.12620v1 Announce Type: cross Abstract: We study syllogistic reasoning in LLMs from the logical and natural language perspectives. In process, we explore fundamental reasoning capabilities of the LLMs and the direction this research is moving forward. To aid in our studies, we use 14 large language models and investigate their syllogistic reasoning capabilities in terms of symbolic inferences as well as natural language understanding. Even though this reasoning mechanism is not a unif
Understanding Syllogistic Reasoning in LLMs from Formal and Natural Language Perspectives
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cs.AI, q-bio.NC updates on arXiv.org
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Cisco Integrated AI Security and Safety Framework Report
arXiv:2512.12921v1 Announce Type: cross Abstract: Artificial intelligence (AI) systems are being readily and rapidly adopted, increasingly permeating critical domains: from consumer platforms and enterprise software to networked systems with embedded agents. While this has unlocked potential for human productivity gains, the attack surface has expanded accordingly: threats now span content safety failures (e.g., harmful or deceptive outputs), model and data integrity compromise (e.g., poisoning
Cisco Integrated AI Security and Safety Framework Report
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cs.AI, q-bio.NC updates on arXiv.org
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Building from Scratch: A Multi-Agent Framework with Human-in-the-Loop for Multilingual Legal Terminology Mapping
arXiv:2512.12950v1 Announce Type: cross Abstract: Accurately mapping legal terminology across languages remains a significant challenge, especially for language pairs like Chinese and Japanese, which share a large number of homographs with different meanings. Existing resources and standardized tools for these languages are limited. To address this, we propose a human-AI collaborative approach for building a multilingual legal terminology database, based on a multi-agent framework. This approac
Building from Scratch: A Multi-Agent Framework with Human-in-the-Loop for Multilingual Legal Terminology Mapping
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cs.AI, q-bio.NC updates on arXiv.org
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From User Interface to Agent Interface: Efficiency Optimization of UI Representations for LLM Agents
arXiv:2512.13438v1 Announce Type: cross Abstract: While Large Language Model (LLM) agents show great potential for automated UI navigation such as automated UI testing and AI assistants, their efficiency has been largely overlooked. Our motivating study reveals that inefficient UI representation creates a critical performance bottleneck. However, UI representation optimization, formulated as the task of automatically generating programs that transform UI representations, faces two unique challe
From User Interface to Agent Interface: Efficiency Optimization of UI Representations for LLM Agents
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cs.AI, q-bio.NC updates on arXiv.org
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Generating Reliable Synthetic Clinical Trial Data: The Role of Hyperparameter Optimization and Domain Constraints
arXiv:2505.05019v2 Announce Type: replace-cross Abstract: The generation of synthetic clinical trial data offers a promising approach to mitigating privacy concerns and data accessibility limitations in medical research. However, ensuring that synthetic datasets maintain high fidelity, utility, and adherence to domain-specific constraints remains a key challenge. While hyperparameter optimization (HPO) improves generative model performance, the effectiveness of different optimization strategies
Generating Reliable Synthetic Clinical Trial Data: The Role of Hyperparameter Optimization and Domain Constraints
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cs.AI, q-bio.NC updates on arXiv.org
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A Collectivist, Economic Perspective on AI
arXiv:2507.06268v3 Announce Type: replace-cross Abstract: Information technology is in the midst of a revolution in which omnipresent data collection and machine learning are impacting the human world as never before. The word ``intelligence'' is being used as a North Star for the development of this technology, with human cognition viewed as a baseline. This view neglects the fact that humans are social animals and that much of our intelligence is social and cultural in origin. Moreover, faili
A Collectivist, Economic Perspective on AI
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cs.AI, q-bio.NC updates on arXiv.org
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Grounding Large Language Models in Clinical Evidence: A Retrieval-Augmented Generation System for Querying UK NICE Clinical Guidelines
arXiv:2510.02967v3 Announce Type: replace-cross Abstract: This paper presents the development and evaluation of a Retrieval-Augmented Generation (RAG) system for querying the United Kingdom's National Institute for Health and Care Excellence (NICE) clinical guidelines using Large Language Models (LLMs). The extensive length and volume of these guidelines can impede their utilisation within a time-constrained healthcare system, a challenge this project addresses through the creation of a system
Grounding Large Language Models in Clinical Evidence: A Retrieval-Augmented Generation System for Querying UK NICE Clinical Guidelines
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cs.AI, q-bio.NC updates on arXiv.org
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Three Lenses on the AI Revolution: Risk, Transformation, Continuity
arXiv:2510.12859v2 Announce Type: replace-cross Abstract: Artificial Intelligence (AI) has emerged as both a continuation of historical technological revolutions and a potential rupture with them. This paper argues that AI must be viewed simultaneously through three lenses: \textit{risk}, where it resembles nuclear technology in its irreversible and global externalities; \textit{transformation}, where it parallels the Industrial Revolution as a general-purpose technology driving productivity an
Three Lenses on the AI Revolution: Risk, Transformation, Continuity
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cs.AI, q-bio.NC updates on arXiv.org
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Hierarchical Molecular Language Models (HMLMs)
arXiv:2512.00696v3 Announce Type: replace-cross Abstract: Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecular Language Models (HMLMs), a novel framework that models cellular signaling as a specialized molecular language, where signaling molecules function as tokens, protein interactions define syntax, and functional consequences constitute semantics. HMLMs employ a t
Hierarchical Molecular Language Models (HMLMs)
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(Multiomics OR Omics) AND (Pancreatic)
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Senescence-driven molecular subtyping in pancreatic cancer: a multi-omics framework for precision medicine
BMC Cancer. 2025 Dec 15. doi: 10.1186/s12885-025-15341-z. Online ahead of print.NO ABSTRACTPMID:41398222 | DOI:10.1186/s12885-025-15341-z
Senescence-driven molecular subtyping in pancreatic cancer: a multi-omics framework for precision medicine
BMC Cancer. 2025 Dec 15. doi: 10.1186/s12885-025-15341-z. Online ahead of print.
NO ABSTRACT
PMID:41398222 | DOI:10.1186/s12885-025-15341-z
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npj Digital Medicine
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H&E-based MSI/MMR testing with AI in colorectal cancer: a multi-centred blinded evaluation
npj Digital Medicine, Published online: 15 December 2025; doi:10.1038/s41746-025-02218-5H&E-based MSI/MMR testing with AI in colorectal cancer: a multi-centred blinded evaluation
H&E-based MSI/MMR testing with AI in colorectal cancer: a multi-centred blinded evaluation
npj Digital Medicine, Published online: 15 December 2025; doi:10.1038/s41746-025-02218-5
H&E-based MSI/MMR testing with AI in colorectal cancer: a multi-centred blinded evaluation-
cs.AI, q-bio.NC updates on arXiv.org
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Does Less Hallucination Mean Less Creativity? An Empirical Investigation in LLMs
arXiv:2512.11509v1 Announce Type: cross Abstract: Large Language Models (LLMs) exhibit remarkable capabilities in natural language understanding and reasoning, but suffer from hallucination: the generation of factually incorrect content. While numerous methods have been developed to reduce hallucinations, their impact on creative generations remains unexplored. This gap is particularly critical for AI-assisted scientific discovery, which requires both factual accuracy and creative hypothesis ge
Does Less Hallucination Mean Less Creativity? An Empirical Investigation in LLMs
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cs.AI, q-bio.NC updates on arXiv.org
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From Verification Burden to Trusted Collaboration: Design Goals for LLM-Assisted Literature Reviews
arXiv:2512.11661v1 Announce Type: cross Abstract: Large Language Models (LLMs) are increasingly embedded in academic writing practices. Although numerous studies have explored how researchers employ these tools for scientific writing, their concrete implementation, limitations, and design challenges within the literature review process remain underexplored. In this paper, we report a user study with researchers across multiple disciplines to characterize current practices, benefits, and \textit
From Verification Burden to Trusted Collaboration: Design Goals for LLM-Assisted Literature Reviews
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cs.AI, q-bio.NC updates on arXiv.org
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Understanding Prompt Management in GitHub Repositories: A Call for Best Practices
arXiv:2509.12421v2 Announce Type: replace-cross Abstract: The rapid adoption of foundation models (e.g., large language models) has given rise to promptware, i.e., software built using natural language prompts. Effective management of prompts, such as organization and quality assurance, is essential yet challenging. In this study, we perform an empirical analysis of 24,800 open-source prompts from 92 GitHub repositories to investigate prompt management practices and quality attributes. Our find
Understanding Prompt Management in GitHub Repositories: A Call for Best Practices
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cs.AI, q-bio.NC updates on arXiv.org
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MetaVoxel: Joint Diffusion Modeling of Imaging and Clinical Metadata
arXiv:2512.10041v2 Announce Type: replace-cross Abstract: Modern deep learning methods have achieved impressive results across tasks from disease classification, estimating continuous biomarkers, to generating realistic medical images. Most of these approaches are trained to model conditional distributions defined by a specific predictive direction with a specific set of input variables. We introduce MetaVoxel, a generative joint diffusion modeling framework that models the joint distribution o
MetaVoxel: Joint Diffusion Modeling of Imaging and Clinical Metadata
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Omics In Lung
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High-Throughput Dissection of Inter-Organ Genetic Networks: A Multi-Omic Systems Biology Approach
SLAS Technol. 2025 Dec 11:100376. doi: 10.1016/j.slast.2025.100376. Online ahead of print.ABSTRACTThe existing multi-omic analyses are frequently confined to individual tissues, and the regulatory picture of the systemic regulator of complex physiology and disease is hidden. To fill this gap, we have created a unified systems biology model of the high-throughput dissection of inter-organ genetic networks. Our model incorporates transcriptomic, epigenomic and proteomic analysis of five major orga
High-Throughput Dissection of Inter-Organ Genetic Networks: A Multi-Omic Systems Biology Approach
SLAS Technol. 2025 Dec 11:100376. doi: 10.1016/j.slast.2025.100376. Online ahead of print.
ABSTRACT
The existing multi-omic analyses are frequently confined to individual tissues, and the regulatory picture of the systemic regulator of complex physiology and disease is hidden. To fill this gap, we have created a unified systems biology model of the high-throughput dissection of inter-organ genetic networks. Our model incorporates transcriptomic, epigenomic and proteomic analysis of five major organs (liver, kidney, heart, lung, brain) using the Multi-Omics Factor Analysis (MOFA+) tool, specifically, cross-tissue coordination. We characterized 27 evidence-heavy cross-tissue modules (FDR < 0.05) that are major hubs such as *HNF4Aenda NRF2cheng8loadmasterregulatingconstitutionembryonicstemcellularinfoncogenes recognize them. One notable observation was liver-kidney metabolic axis, significant cross-talks in hepatocyte organoids are confirmed with CRISPR knockdown, which suppresses the expression of transporters expressed by the kidney. Our work offers a scalable validated framework that goes beyond organ-centric perspectives, which can be used as a potent tool of systemic disease modelling and precision medicine.
PMID:41389879 | DOI:10.1016/j.slast.2025.100376