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cs.AI, q-bio.NC updates on arXiv.org
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Agentic Digital Twins: A Taxonomy of Capabilities for Understanding Possible Futures
arXiv:2601.18799v1 Announce Type: cross Abstract: As digital twins (DTs) evolve to become more agentic through the integration of artificial intelligence (AI), they acquire capabilities that extend beyond dynamic representation of their target systems. This paper presents a taxonomy of agentic DTs organised around three fundamental dimensions: the locus of agency (external, internal, distributed), the tightness of coupling (loose, tight, constitutive), and model evolution (static, adaptive, rec
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cs.AI, q-bio.NC updates on arXiv.org
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Lightweight Quantum-Enhanced ResNet for Coronary Angiography Classification: A Hybrid Quantum-Classical Feature Enhancement Framework
arXiv:2601.18814v1 Announce Type: cross Abstract: Background: Coronary angiography (CAG) is the cornerstone imaging modality for evaluating coronary artery stenosis and guiding interventional decision-making. However, interpretation based on single-frame angiographic images remains highly operator-dependent, and conventional deep learning models still face challenges in modeling complex vascular morphology and fine-grained texture patterns.Methods: We propose a Lightweight Quantum-Enhanced ResN
Lightweight Quantum-Enhanced ResNet for Coronary Angiography Classification: A Hybrid Quantum-Classical Feature Enhancement Framework
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cs.AI, q-bio.NC updates on arXiv.org
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Tri-Reader: An Open-Access, Multi-Stage AI Pipeline for First-Pass Lung Nodule Annotation in Screening CT
arXiv:2601.19380v1 Announce Type: cross Abstract: Using multiple open-access models trained on public datasets, we developed Tri-Reader, a comprehensive, freely available pipeline that integrates lung segmentation, nodule detection, and malignancy classification into a unified tri-stage workflow. The pipeline is designed to prioritize sensitivity while reducing the candidate burden for annotators. To ensure accuracy and generalizability across diverse practices, we evaluated Tri-Reader on multi
Tri-Reader: An Open-Access, Multi-Stage AI Pipeline for First-Pass Lung Nodule Annotation in Screening CT
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cs.AI, q-bio.NC updates on arXiv.org
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Is On-Policy Data always the Best Choice for Direct Preference Optimization-based LM Alignment?
arXiv:2508.10530v2 Announce Type: replace Abstract: The alignment of language models~(LMs) with human preferences is critical for building reliable AI systems. The problem is typically framed as optimizing an LM policy to maximize the expected reward that reflects human preferences. Recently, Direct Preference Optimization~(DPO) was proposed as a LM alignment method that directly optimize the policy from static preference data, and further improved by incorporating on-policy sampling~(i.e., pre
Is On-Policy Data always the Best Choice for Direct Preference Optimization-based LM Alignment?
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cs.AI, q-bio.NC updates on arXiv.org
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Demystifying the Roles of LLM Layers in Retrieval, Knowledge, and Reasoning
arXiv:2510.02091v4 Announce Type: replace Abstract: Recent studies suggest that the deeper layers of Large Language Models (LLMs) contribute little to representation learning and can often be removed without significant performance loss. However, such claims are typically drawn from narrow evaluations and may overlook important aspects of model behavior. In this work, we present a systematic study of depth utilization across diverse dimensions, including evaluation protocols, task categories, a
Demystifying the Roles of LLM Layers in Retrieval, Knowledge, and Reasoning
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cs.AI, q-bio.NC updates on arXiv.org
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Rethinking the AI Scientist: Interactive Multi-Agent Workflows for Scientific Discovery
arXiv:2601.12542v2 Announce Type: replace Abstract: Artificial intelligence systems for scientific discovery have demonstrated remarkable potential, yet existing approaches remain largely proprietary and operate in batch-processing modes requiring hours per research cycle, precluding real-time researcher guidance. This paper introduces Deep Research, a multi-agent system enabling interactive scientific investigation with turnaround times measured in minutes. The architecture comprises specializ
Rethinking the AI Scientist: Interactive Multi-Agent Workflows for Scientific Discovery
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cs.AI, q-bio.NC updates on arXiv.org
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CNN-based IoT Device Identification: A Comparative Study on Payload vs. Fingerprint
arXiv:2304.13894v2 Announce Type: replace-cross Abstract: The proliferation of the Internet of Things (IoT) has introduced a massive influx of devices into the market, bringing with them significant security vulnerabilities. In this diverse ecosystem, robust IoT device identification is a critical preventive measure for network security and vulnerability management. This study proposes a deep learning-based method to identify IoT devices using the Aalto dataset. We employ Convolutional Neural N
CNN-based IoT Device Identification: A Comparative Study on Payload vs. Fingerprint
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cs.AI, q-bio.NC updates on arXiv.org
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General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug Design
arXiv:2406.16821v2 Announce Type: replace-cross Abstract: Structure-based drug design (SBDD) aims to generate ligands that bind strongly and specifically to target protein pockets. Recent diffusion models have advanced SBDD by capturing the distributions of atomic positions and types, yet they often underemphasize binding affinity control during generation. To address this limitation, we introduce \textbf{\textnormal{\textbf{BADGER}}}, a general \textbf{binding-affinity guidance framework for d
General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug Design
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cs.AI, q-bio.NC updates on arXiv.org
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AI-generated data contamination erodes pathological variability and diagnostic reliability
arXiv:2601.12946v3 Announce Type: replace-cross Abstract: Generative artificial intelligence (AI) is rapidly populating medical records with synthetic content, creating a feedback loop where future models are increasingly at risk of training on uncurated AI-generated data. However, the clinical consequences of this AI-generated data contamination remain unexplored. Here, we show that in the absence of mandatory human verification, this self-referential cycle drives a rapid erosion of pathologic
AI-generated data contamination erodes pathological variability and diagnostic reliability
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Journal of Medical Internet Research
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Products, Performance, and Technological Development of Ambulatory Oxygen Therapy Devices: Scoping Review
Background: Ambulatory oxygen therapy is prescribed for patients with chronic lung diseases who experience exertional hypoxemia. However, available devices may not adequately meet user requirements, and their performance characteristics are heterogeneous. Objective: This study aims to identify devices available for delivery of ambulatory oxygen therapy, the technologies that they use to generate oxygen, the performance characteristics of each device, and the development status. Methods: We used
Products, Performance, and Technological Development of Ambulatory Oxygen Therapy Devices: Scoping Review
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(Multiomics OR Omics) AND (Pancreatic)
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Exploring the key molecular mechanisms and immune microenvironment of oxidative stress-related pathways in pancreatic neuroendocrine tumor combining scRNA-seq and bulk RNA
Discov Oncol. 2026 Jan 27. doi: 10.1007/s12672-026-04515-1. Online ahead of print.ABSTRACTBACKGROUND: Pancreatic neuroendocrine tumor (pNET) is a heterogeneous tumor originating from pancreatic endocrine cells. Emerging evidence suggests that oxidative stress plays a crucial role in pNET pathogenesis, yet the precise molecular mechanisms and their interplay with the tumor microenvironment remain unclear. This study aims to systematically elucidate how oxidative stress-related pathways drive pNET
Exploring the key molecular mechanisms and immune microenvironment of oxidative stress-related pathways in pancreatic neuroendocrine tumor combining scRNA-seq and bulk RNA
Discov Oncol. 2026 Jan 27. doi: 10.1007/s12672-026-04515-1. Online ahead of print.
ABSTRACT
BACKGROUND: Pancreatic neuroendocrine tumor (pNET) is a heterogeneous tumor originating from pancreatic endocrine cells. Emerging evidence suggests that oxidative stress plays a crucial role in pNET pathogenesis, yet the precise molecular mechanisms and their interplay with the tumor microenvironment remain unclear. This study aims to systematically elucidate how oxidative stress-related pathways drive pNET progression through an integrated multi-omics approach.
METHODS: We designed a three-tier analytical strategy to address interconnected scientific questions. First, to identify which oxidative stress-related genes are dysregulated in pNET, we performed differential expression analysis and weighted gene co-expression network analysis (WGCNA) on the GSE73338 dataset (63 pNET samples, 5 controls), intersecting the. results with oxidative stress gene sets to obtain 71 candidate genes. Second, to understand the functional implications of these genes, we conducted GO/KEGG enrichment analysis and constructed protein-protein interaction (PPI) networks, from which we identified BCL2L1 and PHGDH as key hub genes using three independent algorithms. We then assessed their diagnostic value through ROC analysis and built a prognostic nomogram model. Third, to explore how these key genes influence the tumor microenvironment, we performed immune infiltration analysis using CIBERSORTx. Fourth, to reveal upstream regulatory mechanisms, we constructed ceRNA networks and predicted transcription factors. Fifth, to identify potential therapeutic interventions, we conducted drug prediction and molecular docking analyses. Finally, to validate our findings at cellular resolution and understand cellular heterogeneity, we analyzed single-cell RNA sequencing data from GSE256136 (20 samples), identifying cell types, quantifying cell-cell communications, and confirming key gene expression patterns across different cell populations.
RESULTS: Our systematic analysis revealed that oxidative stress-related genes in pNET were significantly enriched in the PI3K-Akt signaling pathway, cysteine and methionine metabolism, and HIF-1 signaling pathway. BCL2L1 and PHGDH emerged as central regulators with excellent diagnostic performance (AUC > 0.9). Immune infiltration analysis demonstrated significant alterations in activated dendritic cells, memory B cells, and resting NK cells, which correlated strongly with BCL2L1 and PHGDH expression, suggesting these genes link oxidative stress to immune dysfunction. The ceRNA network centered on KCNQ1OT1 and hsa-miR-15a-5p revealed multi-layered transcriptional and post-transcriptional regulation. Drug prediction identified sertindole and cabozantinib as promising therapeutic candidates. Single-cell analysis identified 11 cell types and confirmed that endocrine cells are the primary site of BCL2L1 and PHGDH dysregulation, with extensive crosstalk between endocrine cells and T cells potentially mediating immune evasion.
CONCLUSION: Through integrated multi-omics analysis, we established that oxidative stress pathways may drive pNET progression through a coordinated mechanism involving metabolic reprogramming (via BCL2L1 and PHGDH downregulation), immune microenvironment remodeling (through altered dendritic cell and NK cell function), and complex regulatory networks. BCL2L1 and PHGDH represent potential diagnostic biomarkers and candidate therapeutic targets that require experimental validation, providing new directions for precision medicine in pNET.
PMID:41591671 | DOI:10.1007/s12672-026-04515-1
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InfoQ

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OpenAI and Anthropic Introduce Healthcare-Focused AI Platforms
OpenAI and Anthropic have announced new healthcare-oriented AI offerings that extend their models beyond general conversational use and into regulated clinical and life sciences environments. Both releases emphasize technical integration, interoperability, and governance, reflecting a shift toward AI systems designed to operate directly within existing healthcare infrastructure. By Robert Krzaczyński
OpenAI and Anthropic Introduce Healthcare-Focused AI Platforms
OpenAI and Anthropic have announced new healthcare-oriented AI offerings that extend their models beyond general conversational use and into regulated clinical and life sciences environments. Both releases emphasize technical integration, interoperability, and governance, reflecting a shift toward AI systems designed to operate directly within existing healthcare infrastructure.
By Robert Krzaczyński-
npj Digital Medicine
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Publisher Correction: Best practice recommendations and considerations for designing and electronically implementing event-driven diaries in clinical trials
npj Digital Medicine, Published online: 27 January 2026; doi:10.1038/s41746-026-02396-wPublisher Correction: Best practice recommendations and considerations for designing and electronically implementing event-driven diaries in clinical trials
Publisher Correction: Best practice recommendations and considerations for designing and electronically implementing event-driven diaries in clinical trials
npj Digital Medicine, Published online: 27 January 2026; doi:10.1038/s41746-026-02396-w
Publisher Correction: Best practice recommendations and considerations for designing and electronically implementing event-driven diaries in clinical trials-
Nature Biotechnology - Issue - nature.com science feeds
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China’s innovation in translational medicine: rethinking early-stage clinical development
Nature Biotechnology, Published online: 27 January 2026; doi:10.1038/s41587-025-02998-xAs pressure mounts globally on drug pricing and development cost continues to rise, clinicians and translational scientists in biotech, academia and biopharma companies are re-evaluating when, where and how to launch early clinical programs. These initial patient data become critical to de-risk development programs and allow developers to deploy their limited time and resources on the most promising drugs. We
China’s innovation in translational medicine: rethinking early-stage clinical development
Nature Biotechnology, Published online: 27 January 2026; doi:10.1038/s41587-025-02998-x
As pressure mounts globally on drug pricing and development cost continues to rise, clinicians and translational scientists in biotech, academia and biopharma companies are re-evaluating when, where and how to launch early clinical programs. These initial patient data become critical to de-risk development programs and allow developers to deploy their limited time and resources on the most promising drugs. We evaluate four fundamental shifts in drug development that appear to be unfolding and may well become critical to future global biopharma success: use of large-scale high quality cohort studies, sponsor-driven investigator-initiated trials, the integration of affordable artificial intelligence with extensive high quality data registries, and China’s focus on precision medicine. —-
cs.AI, q-bio.NC updates on arXiv.org
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High-Fidelity Longitudinal Patient Simulation Using Real-World Data
arXiv:2601.17310v1 Announce Type: new Abstract: Simulation is a powerful tool for exploring uncertainty. Its potential in clinical medicine is transformative and includes personalized treatment planning and virtual clinical trials. However, simulating patient trajectories is challenging because of complex biological and sociocultural influences. Here, we show that real-world clinical records can be leveraged to empirically model patient timelines. We developed a generative simulator model that
High-Fidelity Longitudinal Patient Simulation Using Real-World Data
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cs.AI, q-bio.NC updates on arXiv.org
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HyCARD-Net: A Synergistic Hybrid Intelligence Framework for Cardiovascular Disease Diagnosis
arXiv:2601.17767v1 Announce Type: new Abstract: Cardiovascular disease (CVD) remains the foremost cause of mortality worldwide, underscoring the urgent need for intelligent and data-driven diagnostic tools. Traditional predictive models often struggle to generalize across heterogeneous datasets and complex physiological patterns. To address this, we propose a hybrid ensemble framework that integrates deep learning architectures, Convolutional Neural Networks (CNN) and Long Short-Term Memory (LS
HyCARD-Net: A Synergistic Hybrid Intelligence Framework for Cardiovascular Disease Diagnosis
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cs.AI, q-bio.NC updates on arXiv.org
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RegGuard: AI-Powered Retrieval-Enhanced Assistant for Pharmaceutical Regulatory Compliance
arXiv:2601.17826v1 Announce Type: new Abstract: The increasing frequency and complexity of regulatory updates present a significant burden for multinational pharmaceutical companies. Compliance teams must interpret evolving rules across jurisdictions, formats, and agencies, often manually, at high cost and risk of error. We introduce RegGuard, an industrial-scale AI assistant designed to automate the interpretation of heterogeneous regulatory texts and align them with internal corporate policie
RegGuard: AI-Powered Retrieval-Enhanced Assistant for Pharmaceutical Regulatory Compliance
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cs.AI, q-bio.NC updates on arXiv.org
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LoD Sketch Extraction from Architectural Models Using Generative AI: Dataset Construction for Multi-Level Architectural Design Generation
arXiv:2601.17095v1 Announce Type: cross Abstract: For architectural design, representation across multiple Levels of Details (LoD) is essential for achieving a smooth transition from conceptual massing to detailed modeling. However, traditional LoD modeling processes rely on manual operations that are time-consuming, labor-intensive, and prone to geometric inconsistencies. While the rapid advancement of generative artificial intelligence (AI) has opened new possibilities for generating multi-le
LoD Sketch Extraction from Architectural Models Using Generative AI: Dataset Construction for Multi-Level Architectural Design Generation
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cs.AI, q-bio.NC updates on arXiv.org
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Federated Proximal Optimization for Privacy-Preserving Heart Disease Prediction: A Controlled Simulation Study on Non-IID Clinical Data
arXiv:2601.17183v1 Announce Type: cross Abstract: Healthcare institutions have access to valuable patient data that could be of great help in the development of improved diagnostic models, but privacy regulations like HIPAA and GDPR prevent hospitals from directly sharing data with one another. Federated Learning offers a way out to this problem by facilitating collaborative model training without having the raw patient data centralized. However, clinical datasets intrinsically have non-IID (no
Federated Proximal Optimization for Privacy-Preserving Heart Disease Prediction: A Controlled Simulation Study on Non-IID Clinical Data
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cs.AI, q-bio.NC updates on arXiv.org
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Decentralized Multi-Agent Swarms for Autonomous Grid Security in Industrial IoT: A Consensus-based Approach
arXiv:2601.17303v1 Announce Type: cross Abstract: As Industrial Internet of Things (IIoT) environments expand to include tens of thousands of connected devices. The centralization of security monitoring architectures creates serious latency issues that savvy attackers can exploit to compromise an entire manufacturing ecosystem. This paper outlines a new, decentralized multi-agent swarm (DMAS) architecture that includes autonomous artificial intelligence (AI) agents at each edge gateway, functio