Normal view
-
cs.AI, q-bio.NC updates on arXiv.org
-
Do Influence-Derived Data Perturbations Enable Machine Unlearning? A Controlled Study of Three Plausible Roles
arXiv:2609.12313v1 Announce Type: new Abstract: We evaluate Deep Perturbation Learning (DPL), which perturbs training images and labels along influence-derived directions, in three roles in which prior work has positioned it for machine unlearning: a direct deletion signal (the strongest claim), a utility-preserving regularizer, and a warm start for adversarial unlearning. Evidence for the weaker roles has been used to support the stronger one, so we test each role separately under a matched pr
-
Molecular Therapy
-
Synchronized latency reversal and immune clearance by a multifunctional fusion protein enables HIV-1 reservoir reduction
Latent HIV reservoirs evade both antiviral therapy and immune surveillance. Luo and colleagues develop a multifunctional fusion protein that couples reservoir reactivation with targeted immune engagement and clearance, offering a coordinated strategy to expose and eliminate persistent HIV-infected cells.
Synchronized latency reversal and immune clearance by a multifunctional fusion protein enables HIV-1 reservoir reduction
-
(Multiomics OR Omics) AND (Pancreatic)
-
The redox architecture of gestational diabetes mellitus: from cellular stress engine to epigenetic and mitochondrial rewiring
Free Radic Biol Med. 2026 Sep 9;256:441-460. doi: 10.1016/j.freeradbiomed.2026.09.006. Online ahead of print.ABSTRACTGestational diabetes mellitus (GDM) is a common pregnancy complication with a rising global prevalence, posing serious short-term and long-term health threats to both mothers and offspring. This review repositions GDM as a systemic disorder in which oxidative stress acts as a proposed mechanistic hub, linking upstream risk factors to downstream pathophysiology. We first examine ho
The redox architecture of gestational diabetes mellitus: from cellular stress engine to epigenetic and mitochondrial rewiring
Free Radic Biol Med. 2026 Sep 9;256:441-460. doi: 10.1016/j.freeradbiomed.2026.09.006. Online ahead of print.
ABSTRACT
Gestational diabetes mellitus (GDM) is a common pregnancy complication with a rising global prevalence, posing serious short-term and long-term health threats to both mothers and offspring. This review repositions GDM as a systemic disorder in which oxidative stress acts as a proposed mechanistic hub, linking upstream risk factors to downstream pathophysiology. We first examine how "upstream" factors-including genetic susceptibility, pre-conception status, and environmental exposures-converge to promote a state of pathological redox imbalance. We then examine key mechanistic pathways through which oxidative stress is thought to contribute to systemic insulin resistance and pancreatic β-cell failure, highlighting novel pathways involving intercellular communication via tunneling nanotubes and exosomes. Furthermore, we explore the downstream cascade, where oxidative stress may program maternal accelerated biological aging and multi-organ offspring disease trajectories through nuclear epigenetic programming and mitochondrial dysfunction programming, leaving what has been termed a persistent "metabolic memory". Consequently, this review evaluates emerging strategies that target oxidative stress for early prediction and precision intervention. Early prediction models based on direct redox biomarkers and multi-omics signatures hold potential to shift diagnosis from late-gestation oral glucose tolerance test (OGTT) to first-trimester risk stratification. Current supporting evidence draws from human epidemiological associations, ex vivo placental analyses, and experimental models. However, direct causal and interventional validation in pregnant women remains limited. Integrating targeted redox risk stratification and precision interventions into a life-course clinical framework may help interrupt the intergenerational transmission of metabolic disease initiated by GDM.
PMID:42716407 | DOI:10.1016/j.freeradbiomed.2026.09.006
-
(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
-
A visual analysis of the research dynamics of biomarkers for lung cancer screening
Clin Epigenetics. 2026 May 26;18(1):90. doi: 10.1186/s13148-026-02084-2.ABSTRACTBACKGROUND: Non-invasive biomarkers offer potential to improve risk stratification and early diagnosis of lung cancer, complementing low-dose computed tomography (LDCT) screening. This study employed bibliometric analysis to identify global research trends, collaborative networks, and future directions in lung cancer biomarker research. Publications on lung cancer biomarkers for screening were retrieved from the Web
A visual analysis of the research dynamics of biomarkers for lung cancer screening
Clin Epigenetics. 2026 May 26;18(1):90. doi: 10.1186/s13148-026-02084-2.
ABSTRACT
BACKGROUND: Non-invasive biomarkers offer potential to improve risk stratification and early diagnosis of lung cancer, complementing low-dose computed tomography (LDCT) screening. This study employed bibliometric analysis to identify global research trends, collaborative networks, and future directions in lung cancer biomarker research. Publications on lung cancer biomarkers for screening were retrieved from the Web of Science Core Collection (WoSCC). Data processing and visualisation were performed using Citespace, VOSviewer, KH Coder, Latent Dirichlet Allocation (LDA) topic modelling, and the online bibliometric analysis platform. Burst detection analysis was performed to predict emerging research trends.
RESULTS: Analysis of 3636 publications revealed exponential growth in research output since 2014. International collaboration demonstrated a dual-core structure centred on China and the United States, with Chinese institutions showing high publication volumes and American institutions demonstrating greater citation influence. Journal citation mapping revealed three evolutionary phases: basic mechanisms-clinical translation-intelligent integration. LDA topic modelling identified 22 topics grouped into five core research directions: imaging and pathological diagnostic techniques; molecular and omics marker research; liquid biopsy and new detection technologies; clinical and translational medicine research; and tumour biology and treatment mechanisms. Burst detection analysis predicted future four priority areas: epigenetic studies centred on DNA methylation for risk prediction; treatment resistance and invasion mechanisms; liquid biopsy technology development; and targeted therapy clinical trials.
CONCLUSIONS: Lung cancer biomarker research has evolved towards multimodal, intelligent screening approaches. Future research priorities include DNA methylation-based markers, circulating microRNA signatures, and artificial intelligence-assisted diagnostic platforms to improve early detection accuracy and complement LDCT screening.
PMID:42185923 | DOI:10.1186/s13148-026-02084-2
-
cs.AI, q-bio.NC updates on arXiv.org
-
EchoPilot: Training-Free Ultrasound Video Segmentation via Scale-Space Semantic Prompting and Reliability-Gated Memory
arXiv:2605.25944v1 Announce Type: cross Abstract: Ultrasound video segmentation is clinically valuable yet difficult due to speckle noise, weak boundaries, and rapid anatomical deformation. Recent promptable foundation models enable point-guided segmentation, but their direct deployment in ultrasound remains unreliable: a single point provides insufficient spatial context to resolve scale ambiguity, and greedy memory updates amplify early errors into severe temporal drift. We present EchoPilot,
EchoPilot: Training-Free Ultrasound Video Segmentation via Scale-Space Semantic Prompting and Reliability-Gated Memory
-
Omics in Hepatocellular
-
A review of organoid-immune co-culture platforms to model the immune microenvironment of hepatocellular carcinoma and guide immunotherapy
J Transl Med. 2026 May 20. doi: 10.1186/s12967-026-08278-9. Online ahead of print.ABSTRACTBACKGROUND: Hepatocellular carcinoma (HCC) is characterized by a highly immunosuppressive and heterogeneous tumor microenvironment that limits the effectiveness of current immunotherapies. Conventional two-dimensional cultures and animal models fail to fully capture patient-specific tumor-immune interactions, creating an urgent need for more physiologically relevant platforms.MAIN BODY: This review summariz
A review of organoid-immune co-culture platforms to model the immune microenvironment of hepatocellular carcinoma and guide immunotherapy
J Transl Med. 2026 May 20. doi: 10.1186/s12967-026-08278-9. Online ahead of print.
ABSTRACT
BACKGROUND: Hepatocellular carcinoma (HCC) is characterized by a highly immunosuppressive and heterogeneous tumor microenvironment that limits the effectiveness of current immunotherapies. Conventional two-dimensional cultures and animal models fail to fully capture patient-specific tumor-immune interactions, creating an urgent need for more physiologically relevant platforms.
MAIN BODY: This review summarizes recent advances in co-culture systems integrating patient-derived HCC organoids with defined immune cell populations to reconstruct essential features of the tumor microenvironment. We describe strategies for organoid establishment and validation, outline immune cell integration approaches, and compare static three-dimensional cultures, microfluidic organ-on-chip systems, and bioengineered multicellular platforms. We further highlight key tumor-immune interaction mechanisms that have been functionally interrogated in these systems, including immune checkpoint-mediated T-cell dysfunction, adenosine-driven metabolic suppression, and chemokine-regulated immune recruitment. Importantly, we critically evaluate current limitations, including immune cell exhaustion artifacts, lack of stromal and vascular complexity, and variability across protocols, which may affect the reproducibility and translational interpretation of these models. While emerging studies suggest potential for predicting immunotherapy responses, robust clinical validation in HCC remains limited.
CONCLUSIONS: Organoid-immune co-culture platforms represent an emerging translational framework that bridges mechanistic tumor immunology with functional precision oncology. With improved standardization and integration of multicellular bioengineering and multi-omics technologies, these systems have strong potential to guide personalized immunotherapy strategies, although further clinical validation is required.
PMID:42163357 | DOI:10.1186/s12967-026-08278-9
-
Nature - Issue - nature.com science feeds
-
Author Correction: Inactivating <i>SnRK1β1A</i> promotes broad-spectrum disease resistance in rice
Nature, Published online: 20 May 2026; doi:10.1038/s41586-026-10659-5Author Correction: Inactivating SnRK1β1A promotes broad-spectrum disease resistance in rice
Author Correction: Inactivating <i>SnRK1β1A</i> promotes broad-spectrum disease resistance in rice
Nature, Published online: 20 May 2026; doi:10.1038/s41586-026-10659-5
Author Correction: Inactivating SnRK1β1A promotes broad-spectrum disease resistance in rice-
cs.AI, q-bio.NC updates on arXiv.org
-
PSY-STEP: Structuring Therapeutic Targets and Action Sequences for Proactive Counseling Dialogue Systems
arXiv:2604.04448v1 Announce Type: new Abstract: Cognitive Behavioral Therapy (CBT) aims to identify and restructure automatic negative thoughts pertaining to involuntary interpretations of events, yet existing counseling agents struggle to identify and address them in dialogue settings. To bridge this gap, we introduce STEP, a dataset that models CBT counseling by explicitly reflecting automatic thoughts alongside dynamic, action-level counseling sequences. Using this dataset, we train STEPPER,
PSY-STEP: Structuring Therapeutic Targets and Action Sequences for Proactive Counseling Dialogue Systems
-
cs.AI, q-bio.NC updates on arXiv.org
-
PAIR-Former: Budgeted Relational MIL for miRNA Target Prediction
arXiv:2602.00465v2 Announce Type: replace-cross Abstract: Functional miRNA--mRNA targeting is a large-bag prediction problem: each transcript yields a heavy-tailed pool of candidate target sites (CTSs), yet only a pair-level label is observed. We formalize this regime as \emph{Budgeted Relational Multi-Instance Learning (BR-MIL)}, where at most $K$ instances per bag may receive expensive encoding and relational processing under a hard compute budget. We propose \textbf{PAIR-Former} (Pool-Aware
PAIR-Former: Budgeted Relational MIL for miRNA Target Prediction
-
cs.AI, q-bio.NC updates on arXiv.org
-
UAV-DETR: DETR for Anti-Drone Target Detection
arXiv:2603.22841v1 Announce Type: cross Abstract: Drone detection is pivotal in numerous security and counter-UAV applications. However, existing deep learning-based methods typically struggle to balance robust feature representation with computational efficiency. This challenge is particularly acute when detecting miniature drones against complex backgrounds under severe environmental interference. To address these issues, we introduce UAV-DETR, a novel framework that integrates a small-target
UAV-DETR: DETR for Anti-Drone Target Detection
-
cs.AI, q-bio.NC updates on arXiv.org
-
When Models Judge Themselves: Unsupervised Self-Evolution for Multimodal Reasoning
arXiv:2603.21289v2 Announce Type: replace-cross Abstract: Recent progress in multimodal large language models has led to strong performance on reasoning tasks, but these improvements largely rely on high-quality annotated data or teacher-model distillation, both of which are costly and difficult to scale. To address this, we propose an unsupervised self-evolution training framework for multimodal reasoning that achieves stable performance improvements without using human-annotated answers or ex
When Models Judge Themselves: Unsupervised Self-Evolution for Multimodal Reasoning
-
Nature - Issue - nature.com science feeds
-
Inactivating <i>SnRK1β1A</i> promotes broad-spectrum disease resistance in rice
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10273-5SnRK1β1A in rice promotes susceptibility to multiple fungal diseases, and disrupting this infection-inducible gene confers broad-spectrum resistance without compromising growth or yield under normal field conditions.
Inactivating <i>SnRK1β1A</i> promotes broad-spectrum disease resistance in rice
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10273-5
SnRK1β1A in rice promotes susceptibility to multiple fungal diseases, and disrupting this infection-inducible gene confers broad-spectrum resistance without compromising growth or yield under normal field conditions.-
cs.AI, q-bio.NC updates on arXiv.org
-
Towards AI Search Paradigm
arXiv:2506.17188v2 Announce Type: replace-cross Abstract: In this paper, we introduce the AI Search Paradigm, a comprehensive blueprint for next-generation search systems capable of emulating human information processing and decision-making. The paradigm employs a modular architecture of four LLM-powered agents (Master, Planner, Executor and Writer) that dynamically adapt to the full spectrum of information needs, from simple factual queries to complex multi-stage reasoning tasks. These agents
Towards AI Search Paradigm
-
cs.AI, q-bio.NC updates on arXiv.org
-
xLLM Technical Report
arXiv:2510.14686v2 Announce Type: replace-cross Abstract: We introduce xLLM, an intelligent and efficient Large Language Model (LLM) inference framework designed for high-performance, large-scale enterprise-grade serving, with deep optimizations for diverse AI accelerators. To address these challenges, xLLM builds a novel decoupled service-engine architecture. At the service layer, xLLM-Service features an intelligent scheduling module that efficiently processes multimodal requests and co-locat
xLLM Technical Report
-
cs.AI, q-bio.NC updates on arXiv.org
-
Analysis of approximate linear programming solution to Markov decision problem with log barrier function
arXiv:2509.19800v3 Announce Type: replace Abstract: There are two primary approaches to solving Markov decision problems (MDPs): dynamic programming based on the Bellman equation and linear programming (LP). Dynamic programming methods are the most widely used and form the foundation of both classical and modern reinforcement learning (RL). By contrast, LP-based methods have been less commonly employed, although they have recently gained attention in contexts such as offline RL. The relative un
Analysis of approximate linear programming solution to Markov decision problem with log barrier function
-
cs.AI, q-bio.NC updates on arXiv.org
-
Verifying Chain-of-Thought Reasoning via Its Computational Graph
arXiv:2510.09312v2 Announce Type: replace-cross Abstract: Current Chain-of-Thought (CoT) verification methods predict reasoning correctness based on outputs (black-box) or activations (gray-box), but offer limited insight into why a computation fails. We introduce a white-box method: Circuit-based Reasoning Verification (CRV). We hypothesize that attribution graphs of correct CoT steps, viewed as execution traces of the model's latent reasoning circuits, possess distinct structural fingerprints
Verifying Chain-of-Thought Reasoning via Its Computational Graph
-
cs.AI, q-bio.NC updates on arXiv.org
-
Incentivizing Agentic Reasoning in LLM Judges via Tool-Integrated Reinforcement Learning
arXiv:2510.23038v2 Announce Type: replace-cross Abstract: Large Language Models (LLMs) are widely used as judges to evaluate response quality, providing a scalable alternative to human evaluation. However, most LLM judges operate solely on intrinsic text-based reasoning, limiting their ability to verify complex constraints or perform accurate computation. Motivated by the success of tool-integrated reasoning (TIR) in numerous tasks, we propose TIR-Judge, an end-to-end RL framework for training