Cell Death Discovery, Published online: 16 September 2026; doi:10.1038/s41420-026-03349-8

ESAM reduces sensitivity to anti-HER2 therapy in HER2-positive breast cancer by activating the mTOR pathway

arXiv:2605.24213v1 Announce Type: cross Abstract: Evaluation harnesses are software systems that orchestrate model evaluation by managing model invocation, data loading, metric computation, and result reporting. Despite their critical role in machine learning infrastructure, their operational challenges and engineering concerns have received limited attention so far. We present an empirical study of 57 evaluation harnesses, deriving a five-stage harness model and classifying 16,560 issues by workflow stage and root cause. Most harness operational challenges concentrate in the Specification stage (41.4% of issues), where harnesses integrate external models, datasets, and scoring judges. The three most frequent root causes of operational challenges are unimplemented features (24.3%), documentation gaps (20.3%), and missing input validation (17.2%), which together account for 61.7% of classified issues, spanning both defects in existing functionality and capability gaps that block intended workflows. Root causes also vary by workflow stage: environment incompatibility and external dependency breakage account for 36.2% of provisioning issues, whereas algorithmic error (25.9%) and validation gap (22.5%) dominate assessment issues. Together, these contributions establish an empirical foundation for treating evaluation engineering as a distinct software engineering concern.

arXiv:2602.20144v1 Announce Type: cross Abstract: We present AgentOptics, an agentic AI framework for high-fidelity, autonomous optical system control built on the Model Context Protocol (MCP). AgentOptics interprets natural language tasks and executes protocol-compliant actions on heterogeneous optical devices through a structured tool abstraction layer. We implement 64 standardized MCP tools across 8 representative optical devices and construct a 410-task benchmark to evaluate request understanding, role-aware responses, multi-step coordination, robustness to linguistic variation, and error handling. We assess two deployment configurations--commercial online LLMs and locally hosted open-source LLMs--and compare them with LLM-based code generation baselines. AgentOptics achieves 87.7%--99.0% average task success rates, significantly outperforming code-generation approaches, which reach up to 50% success. We further demonstrate broader applicability through five case studies extending beyond device-level control to system orchestration, monitoring, and closed-loop optimization. These include DWDM link provisioning and coordinated monitoring of coherent 400 GbE and analog radio-over-fiber (ARoF) channels; autonomous characterization and bias optimization of a wideband ARoF link carrying 5G fronthaul traffic; multi-span channel provisioning with launch power optimization; closed-loop fiber polarization stabilization; and distributed acoustic sensing (DAS)-based fiber monitoring with LLM-assisted event detection. These results establish AgentOptics as a scalable, robust paradigm for autonomous control and orchestration of heterogeneous optical systems.