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DeepXiv-SDK: An Agentic Data Interface for Scientific Literature

arXiv:2603.00084v2 Announce Type: replace-cross Abstract: LLM-agents are increasingly used to accelerate the progress of scientific research. Yet a persistent bottleneck is data access: agents not only lack readily available tools for retrieval, but also have to work with unstrcutured, human-centric data on the Internet, such as HTML web-pages and PDF files, leading to excessive token consumption, limit working efficiency, and brittle evidence look-up. This gap motivates the development of \textit{an agentic data interface}, which is designed to enable agents to access and utilize scientific literature in a more effective, efficient, and cost-aware manner. In this paper, we introduce DeepXiv-SDK, which offers a three-layer agentic data interface for scientific literature. 1) Data Layer, which transforms unstructured, human-centric data into normalized and structured representations in JSON format, improving data usability and enabling progressive accessibility of the data. 2) Service Layer, which presents readily available tools for data access and ad-hoc retrieval. It also enables a rich form of agent usage, including CLI, MCP, and Python SDK. 3) Application Layer, which creates a built-in agent, packaging basic tools from the service layer to support complex data access demands. DeepXiv-SDK currently supports the complete ArXiv corpus, and is synchronized daily to incorporate new releases. It is designed to extend to all common open-access corpora, such as PubMed Central, bioRxiv, medRxiv, and chemRxiv. We release RESTful APIs, an open-source Python SDK, and a web demo showcasing deep search and deep research workflows. DeepXiv-SDK is free to use with registration.

VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention

arXiv:2602.19622v1 Announce Type: cross Abstract: Graph Transformer has demonstrated impressive capabilities in the field of graph representation learning. However, existing approaches face two critical challenges: (1) most models suffer from exponentially increasing computational complexity, making it difficult to scale to large graphs; (2) attention mechanisms based on node-level operations limit the flexibility of the model and result in poor generalization performance in out-of-distribution (OOD) scenarios. To address these issues, we propose \textbf{VecFormer} (the \textbf{Vec}tor Quantized Graph Trans\textbf{former}), an efficient and highly generalizable model for node classification, particularly under OOD settings. VecFormer adopts a two-stage training paradigm. In the first stage, two codebooks are used to reconstruct the node features and the graph structure, aiming to learn the rich semantic \texttt{Graph Codes}. In the second stage, attention mechanisms are performed at the \texttt{Graph Token} level based on the transformed cross codebook, reducing computational complexity while enhancing the model's generalization capability. Extensive experiments on datasets of various sizes demonstrate that VecFormer outperforms the existing Graph Transformer in both performance and speed.

(PASS) Visual Prompt Locates Good Structure Sparsity through a Recurrent HyperNetwork

arXiv:2407.17412v2 Announce Type: replace-cross Abstract: Large-scale neural networks have demonstrated remarkable performance in different domains like vision and language processing, although at the cost of massive computation resources. As illustrated by compression literature, structural model pruning is a prominent algorithm to encourage model efficiency, thanks to its acceleration-friendly sparsity patterns. One of the key questions of structural pruning is how to estimate the channel significance. In parallel, work on data-centric AI has shown that prompting-based techniques enable impressive generalization of large language models across diverse downstream tasks. In this paper, we investigate a charming possibility - \textit{leveraging visual prompts to capture the channel importance and derive high-quality structural sparsity}. To this end, we propose a novel algorithmic framework, namely \texttt{PASS}. It is a tailored hyper-network to take both visual prompts and network weight statistics as input, and output layer-wise channel sparsity in a recurrent manner. Such designs consider the intrinsic channel dependency between layers. Comprehensive experiments across multiple network architectures and six datasets demonstrate the superiority of \texttt{PASS} in locating good structural sparsity. For example, at the same FLOPs level, \texttt{PASS} subnetworks achieve $1\%\sim 3\%$ better accuracy on Food101 dataset; or with a similar performance of $80\%$ accuracy, \texttt{PASS} subnetworks obtain $0.35\times$ more speedup than the baselines.
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