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Predicting Neuromodulation Outcome for Parkinson's Disease with Generative Virtual Brain Model

arXiv:2603.29176v1 Announce Type: new Abstract: Parkinson's disease (PD) affects over ten million people worldwide. Although temporal interference (TI) and deep brain stimulation (DBS) are promising therapies, inter-individual variability limits empirical treatment selection, increasing non-negligible surgical risk and cost. Previous explorations either resort to limited statistical biomarkers that are insufficient to characterize variability, or employ AI-driven methods which is prone to overfitting and opacity. We bridge this gap with a pretraining-finetuning framework to predict outcomes directly from resting-state fMRI. Critically, a generative virtual brain foundation model, pretrained on a collective dataset (2707 subjects, 5621 sessions) to capture universal disorder patterns, was finetuned on PD cohorts receiving TI (n=51) or DBS (n=55) to yield individualized virtual brains with high fidelity to empirical functional connectivity (r=0.935). By constructing counterfactual estimations between pathological and healthy neural states within these personalized models, we predicted clinical responses (TI: AUPR=0.853; DBS: AUPR=0.915), substantially outperforming baselines. External and prospective validations (n=14, n=11) highlight the feasibility of clinical translation. Moreover, our framework provides state-dependent regional patterns linked to response, offering hypothesis-generating mechanistic insights.

Structural and dynamical strategies to prevent runaway excitation in reservoir computing

arXiv:2603.29597v1 Announce Type: new Abstract: Reservoirs, typically implemented as recurrent neural networks with fixed random connection weights, can be combined with a simple trained readout layer to perform a wide range of computational tasks. However, increasing the magnitude of reservoir connection weights to exploit nonlinear dynamics can cause the network to develop strong spontaneous activity that drives neurons into saturation, dramatically degrading performance. In this work, we investigate two distinct countermeasures against such runaway excitation. The first approach introduces a subtle non-homogeneous structure into the matrix of connection weigths $w_{ij}$, without altering the overall probability distribution $p(w)$. We identify several favorable structuring principles, such as creating a small subset of neurons with weaker-than-average input connections. Even if the rest of the reservoir falls into runaway saturating behavior, this weakly coupled subset remains in a mildly nonlinear regime whose dynamics can still be exploited by the readout layer. The second approach implements a form of automatic gain control, in which a dedicated control unit dynamically regulates the reservoir's average global activation toward an optimal setpoint. Although the control unit modulates the excitability of the reservoir only via a global gain factor, this mechanism substantially enlarges the dynamical regime favorable for computation and renders performance largely independent of the underlying connection statistics.

Convergent Representations of Linguistic Constructions in Human and Artificial Neural Systems

arXiv:2603.29617v1 Announce Type: new Abstract: Understanding how the brain processes linguistic constructions is a central challenge in cognitive neuroscience and linguistics. Recent computational studies show that artificial neural language models spontaneously develop differentiated representations of Argument Structure Constructions (ASCs), generating predictions about when and how construction-level information emerges during processing. The present study tests these predictions in human neural activity using electroencephalography (EEG). Ten native English speakers listened to 200 synthetically generated sentences across four construction types (transitive, ditransitive, caused-motion, resultative) while neural responses were recorded. Analyses using time-frequency methods, feature extraction, and machine learning classification revealed construction-specific neural signatures emerging primarily at sentence-final positions, where argument structure becomes fully disambiguated, and most prominently in the alpha band. Pairwise classification showed reliable differentiation, especially between ditransitive and resultative constructions, while other pairs overlapped. Crucially, the temporal emergence and similarity structure of these effects mirror patterns in recurrent and transformer-based language models, where constructional representations arise during integrative processing stages. These findings support the view that linguistic constructions are neurally encoded as distinct form-meaning mappings, in line with Construction Grammar, and suggest convergence between biological and artificial systems on similar representational solutions. More broadly, this convergence is consistent with the idea that learning systems discover stable regions within an underlying representational landscape - recently termed a Platonic representational space - that constrains the emergence of efficient linguistic abstractions.

Copy-Spread-Annihilate Dynamics in Degree-Assortative Networks

arXiv:2603.29833v1 Announce Type: new Abstract: In many systems, communication proceeds by broadcasting rather than single source-target routing, but network structures that maximize signal lifetime are not well understood. Degree correlations are known to influence robustness and spreading, yet their effect on signal persistence has remained unclear. Here we introduce Copy-Spread-Annihilate dynamics, a minimal synchronous broadcasting model with annihilation. We show that signal lifetimes vary non-monotonically with assortativity and are maximized near neutral assortativity, where hub-driven amplification is strong but annihilation via short cycles is still limited. Applying this framework to the mouse connectome suggests assortativity as a structural control parameter for broadcast signal persistence in brain-like and other complex networks.

Counterfactual Analysis of Brain Network Dynamics

arXiv:2603.29843v1 Announce Type: new Abstract: Causal inference in brain networks has traditionally relied on regression-based models such as Granger causality, structural equation modeling, and dynamic causal modeling. While effective for identifying directed associations, these methods remain descriptive and acyclic, leaving open the fundamental question of intervention: what would the causal organization become if a pathway were disrupted or externally modulated? We introduce a unified framework for counterfactual causal analysis that models both pathological disruptions and therapeutic interventions as an energy-perturbation problem on network flows. Grounded in Hodge theory, directed communication is decomposed into dissipative and persistent (harmonic) components, enabling systematic analysis of how causal organization reconfigures under hypothetical perturbations. This formulation provides a principled foundation for quantifying network resilience, compensation, and control in complex brain systems.

Multimodal Higher-Order Brain Networks: A Topological Signal Processing Perspective

arXiv:2603.29903v1 Announce Type: new Abstract: Brain connectomics is still largely dominated by pairwise-based models, such as graphs, which cannot represent circulatory or higher-order functional interactions. In this paper, we propose a multimodal framework based on Topological Signal Processing (TSP) that models the brain as a higher-order topological domain and treats functional interactions as discrete vector fields. We integrate diffusion MRI and resting-state fMRI to learn subject-specific brain cell complexes, where statistically validated structural connectivity defines a sparse scaffold and phase-coupling functional edge signals drive the inference of higher-order interactions (HOIs). Using Hodge-theoretic tools, spectral filtering, and sparse signal representations, our framework disentangles brain connectivity into divergence (source-sink organization), gradient (potential-driven coordination), and curl (circulatory HOIs), enabling the characterization of temporal dynamics through the lens of discrete vector calculus. Across 100 healthy young adults from Human Connectome Project, node-based HOIs are highly individualized, yet robust mesoscale structure emerges under functional-system aggregation. We identify a distributed default mode network-centered gradient backbone and limbic-centered rotational flows; divergence polarization and curl profiles defining circulation regimes with insightful occupancy and dwell-time statistics. These topological signatures yield significant brain-behavior associations, revealing a relevant higher-order organization intrinsic to edge-based models. By making divergence, circulation, and recurrent mesoscale coordination directly measurable, this work enables a principled and interpretable topological phenotyping of brain function.

From Patterns to Policy: A Scoping Review Based on Bibliometric Analysis (ScoRBA) of Intelligent and Secure Smart Hospital Ecosystems

arXiv:2603.30004v1 Announce Type: new Abstract: This study examines the evolution of Intelligent and Secure Smart Hospital Ecosystems using a Scoping Review with Bibliometric Analysis (ScoRBA) to map research patterns, identify gaps, and derive policy implications. Analyzing 891 journal articles from Scopus (2006-2025) through co-occurrence analysis, network visualization, overlay analysis, and the Enhanced Strategic Diagram (ESD), the study applies the PAGER framework to link Patterns, Advances, Gaps, Research directions, and Evidence-based policy implications. Findings reveal three interrelated clusters: AI-driven intelligent healthcare systems, decentralized privacy-preserving digital health ecosystems, and scalable cloud-edge infrastructures, showing a convergence toward integrated ecosystem architectures where intelligence, trust, and infrastructure reinforce each other. Despite progress in AI, blockchain, and cloud computing, gaps remain in interoperability, real-world implementation, governance, and cross-layer integration. Emerging themes such as explainable AI, federated learning, and privacy mechanisms highlight areas needing further research. Policy-relevant recommendations focus on coordinated governance, scalable infrastructure, and secure data ecosystems, particularly for developing country contexts. The study bridges bibliometric evidence with actionable policies, supporting informed decision-making in smart hospital development.

Improving Liver Disease Diagnosis with SNNDeep: A Custom Spiking Neural Network Using Diverse Learning Algorithms

arXiv:2508.20125v2 Announce Type: replace-cross Abstract: Purpose: Spiking neural networks (SNNs) have recently gained attention as energy-efficient, biologically plausible alternatives to conventional deep learning models. Their application in high-stakes biomedical imaging remains almost entirely unexplored. Methods: This study introduces SNNDeep, the first tailored SNN specifically optimized for binary classification of liver health status from computed tomography (CT) features. To ensure clinical relevance and broad generalizability, the model was developed and evaluated using the Task03\Liver dataset from the Medical Segmentation Decathlon (MSD), a standardized benchmark widely used for assessing performance across diverse medical imaging tasks. We benchmark three fundamentally different learning algorithms, namely Surrogate Gradient Learning, the Tempotron rule, and Bio-Inspired Active Learning across three architectural variants: a fully customized low-level model built from scratch, and two implementations using leading SNN frameworks, i.e., snnTorch and SpikingJelly. Hyperparameter optimization was performed using Optuna. Results: Our results demonstrate that the custom-built SNNDeep consistently outperforms framework-based implementations, achieving a maximum validation accuracy of 98.35%, superior adaptability across learning rules, and significantly reduced training overhead. Conclusion:This study provides the first empirical evidence that low-level, highly tunable SNNs can surpass standard frameworks in medical imaging, especially in data-limited, temporally constrained diagnostic settings, thereby opening a new pathway for neuro-inspired AI in precision medicine.

Modeling Spatiotemporal Neural Frames for High Resolution Brain Dynamic

arXiv:2603.24176v2 Announce Type: replace-cross Abstract: Capturing dynamic spatiotemporal neural activity is essential for understanding large-scale brain mechanisms. Functional magnetic resonance imaging (fMRI) provides high-resolution cortical representations that form a strong basis for characterizing fine-grained brain activity patterns. The high acquisition cost of fMRI limits large-scale applications, therefore making high-quality fMRI reconstruction a crucial task. Electroencephalography (EEG) offers millisecond-level temporal cues that complement fMRI. Leveraging this complementarity, we present an EEG-conditioned framework for reconstructing dynamic fMRI as continuous neural sequences with high spatial fidelity and strong temporal coherence at the cortical-vertex level. To address sampling irregularities common in real fMRI acquisitions, we incorporate a null-space intermediate-frame reconstruction, enabling measurement-consistent completion of arbitrary intermediate frames and improving sequence continuity and practical applicability. Experiments on the CineBrain dataset demonstrate superior voxel-wise reconstruction quality and robust temporal consistency across whole-brain and functionally specific regions. The reconstructed fMRI also preserves essential functional information, supporting downstream visual decoding tasks. This work provides a new pathway for estimating high-resolution fMRI dynamics from EEG and advances multimodal neuroimaging toward more dynamic brain activity modeling.

Sketching a Space of Brain States

arXiv:2603.22296v1 Announce Type: new Abstract: Brain functional connectivity alterations, that is, pathological changes in the signal exchange between areas of the brain, occur in several neurological diseases, including neurodegenerative and neuropsychiatric ones. They consist in changes in how brain functional networks operate. By conceptualising a brain space as a space whose points are connectome configurations representing brain functional states, changes in brain network functionality can be represented by paths between these points. Paths from a healthy state to a diseased one, or between diseased states as instances of disease progression, are modelled as the action of the Krankheit-Operator, which produces changes from a brain functional state to another. This study proposes a formal representation of the space of brain states and presents its computational definition. References to patients affected by Parkinson's disease, schizophrenia, and Alzheimer-Perusini's disease are included to discuss the proposed approach and possible developments of the research toward a generalisation.
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  • Black Hole-Inspired Horizon Model for Neural Signal Dynamics E. Canessa
    arXiv:2603.22297v1 Announce Type: new Abstract: Electroencephalographic (EEG) signals provide macroscopic observables of complex neural dynamics. We introduce a horizon-inspired framework in which measured EEG signals are modeled as projections of a complex wave-like representation constrained by an effective boundary analogous to an event horizon. In this formulation the signal amplitude obeys a renormalization-group scaling relation while EEG spectral entropy parameterizes the accessibility o
     

Black Hole-Inspired Horizon Model for Neural Signal Dynamics

arXiv:2603.22297v1 Announce Type: new Abstract: Electroencephalographic (EEG) signals provide macroscopic observables of complex neural dynamics. We introduce a horizon-inspired framework in which measured EEG signals are modeled as projections of a complex wave-like representation constrained by an effective boundary analogous to an event horizon. In this formulation the signal amplitude obeys a renormalization-group scaling relation while EEG spectral entropy parameterizes the accessibility of observable modes. The resulting solutions generate oscillatory structures whose geometry and spectral signatures can be explored through signal analysis and sonification. This mapping between entropy-based neural observables and wave-like signal representations provides a physically motivated framework linking entropy measures, scale-dependent dynamics, and observable neural oscillations, and suggests testable connections between spectral entropy and the amplitude scaling of EEG modes.

Ca2+ transient detection and segmentation with the Astronomically motivated algorithm for Background Estimation And Transient Segmentation (Astro-BEATS)

arXiv:2603.22311v1 Announce Type: new Abstract: Fluorescence-based Ca$^{2+}$-imaging is a powerful tool for studying localized neuronal activity, including miniature Synaptic Calcium Transients, providing real-time insights into synaptic activity. These transients induce only subtle changes in the fluorescence signal, often barely above baseline, which poses a significant challenge for automated synaptic transient detection and segmentation. Detecting astronomical transients similarly requires efficient algorithms that will remain robust over a large field of view with varying noise properties. We leverage techniques used in astronomical transient detection for miniature Synaptic Calcium Transient detection in fluorescence microscopy. We present Astro-BEATS, an automatic miniature Synaptic Calcium Transient segmentation algorithm that incorporates image estimation and source-finding techniques used in astronomy and designed for Ca$^{2+}$-imaging videos. Astro-BEATS outperforms current threshold-based approaches for synaptic Ca$^{2+}$ transient detection and segmentation. The produced segmentation masks can be used to train a supervised deep learning algorithm for improved synaptic Ca$^{2+}$ transient detection in Ca$^{2+}$-imaging data. The speed of Astro-BEATS and its applicability to previously unseen datasets without re-optimization makes it particularly useful for generating training datasets for deep learning-based approaches.

Bridging neuroscience and AI: adaptive, culturally sensitive technologies transforming aphasia rehabilitation

arXiv:2603.22357v1 Announce Type: new Abstract: Aphasia, a language impairment primarily resulting from stroke or brain injury, profoundly disrupts communication and everyday functioning. Despite advances in speech therapy, barriers such as limited therapist availability and the scarcity of personalized, culturally relevant tools continue to hinder optimal rehabilitation outcomes. This paper reviews recent developments in neurocognitive research and language technologies that contribute to the diagnosis and therapy of aphasia. Drawing on findings from our ethnographic field study, we introduce two digital therapy prototypes designed to reflect local linguistic diversity and enhance patient engagement. We also show how insights from neuroscience and the local context guided the design of these tools to better meet patient and therapist needs. Our work highlights the potential of adaptive, AI-enhanced assistive technologies to complement conventional therapy and broaden access to therapy. We conclude by outlining future research directions for advancing personalized and scalable aphasia rehabilitation.

Detecting outliers of pursuit eye movements: a preliminary analysis of autism spectrum disorder

arXiv:2603.22705v2 Announce Type: new Abstract: Background: Autism spectrum disorder (ASD) is characterized by significant clinical and biological heterogeneity. Conventional group-mean analyses of eye movements often mask individual atypicalities, potentially overlooking critical pathological signatures. This study aimed to identify idiosyncratic oculomotor patterns in ASD using an "outlier analysis" of smooth pursuit eye movement (SPEM). Methods: We recorded SPEM during a slow Lissajous pursuit task in 18 adults with ASD and 39 typically developed (TD) individuals. To quantify individual deviations, we derived an "outlier score" based on the Mahalanobis distance. This score was calculated from a feature vector, optimized via Principal Component Analysis (PCA), comprising the temporal lag ($\Delta$t) and the spatial deviation ($\Delta$s). An outlier was statistically defined as a score exceeding $\sqrt{10}$ (approximately 3.16$\sigma$) relative to the TD normative distribution. Results: While the TD group exhibited a low outlier rate of 5.1%, the ASD group demonstrated a significantly higher prevalence of 38.9% (7/18) (binomial P = 0.0034). Furthermore, the mean outlier score was significantly elevated in the ASD group (3.00 $\pm$ 2.62) compared to the TD group (1.52 $\pm$ 0.80; P = 0.002). Notably, these extreme deviations were captured even when conventional mean-based comparisons showed limited sensitivity. Conclusions: Our outlier analysis successfully visualized the high degree of idiosyncratic atypicality in ASD oculomotor control. By shifting the focus from group averages to individual deviations, this approach provides a sensitive metric for capturing the inherent heterogeneity of ASD, offering a potential baseline for identifying clinical subtypes.

An Open-Access Multi-modal Dataset for Cognitive, Motor, and Cognitive-Motor Tasks

arXiv:2603.22933v1 Announce Type: new Abstract: The incorporation of neuroimaging techniques such as electroenchephalography (EEG) and functional near-infrared spectroscopy (fNIRS) has provided new opportunities for the analysis of dynamic brain processes involved in cognitive and motor functions. Despite the great contribution of the open-access neuroimaging datasets to neuroscience studies, they have mainly remained on a single modality and isolated task paradigms performed in a controlled environments. These limitations restrict the analysis of multi-task effects in real-world applications, thus creating a gap in the understanding of how cognitive and motor processes interact in daily life activities. To address these limitations, we present a multi-modal dataset containing neurophysiological (EEG, fNIRS), physiological (ECG), behavioral, and subjective measures collected from 30 healthy participants over three sessions. This dataset includes a hierarchical series of seven tasks ranging from single cognitive and motor activities, such as N-back, motor, passive motor, mental arithmetic and motor imagery, to combined cognitive-motor interactions simulating real life scenarios. This raw dataset provides a resource for developing advanced preprocessing methods and analysis pipelines, with potential applications in brain-computer interfaces, neurorehabilitation, and other fields requiring an understanding of multi-tasks brain dynamics. https://doi.org/10.18112/openneuro.ds007554.v1.0.0

Spatial navigation in preclinical Alzheimer's disease: A review

arXiv:2603.23082v1 Announce Type: new Abstract: Alzheimer's disease (AD) develops over a prolonged preclinical phase, during which neuropathological changes accumulate long before cognitive symptoms appear. Identifying cognitive functions affected at early stages is critical for the preclinical detection of asymptomatic individuals at-risk of AD. Early risk identification could enable timely interventions aimed at mitigating the development of significant future cognitive impairment. While episodic memory decline typically appears after substantial medial temporal lobe damage, spatial navigation has emerged as a particularly sensitive cognitive function in preclinical AD. In this review, we provide an overview of spatial navigation computations and the tasks used to assess them, highlighting how spatial navigation relies on neural circuits corresponding to the earliest sites of AD pathology. We synthesize evidence from cognitively unimpaired individuals with AD biomarkers, i.e. individuals at-risk of AD, and discuss future research directions. Overall, performance on spatial navigation tasks, particularly path integration and wayfinding, correlates with plasma and CSF biomarkers of AD pathology, notably p-tau. Spatial navigation assessment can represent a sensitive and scalable approach for early detection of individuals at-risk of AD in preclinical stages, and will inform future interventions to mitigate the progression toward clinically significant cognitive impairment.

Modeling the Disjunction Effect within Classical Probability: A New Decision Process Model and Comparison with Quantum-like Models

arXiv:2603.23233v1 Announce Type: new Abstract: The disjunction effect in human decision making is often taken to show that the classical law of total probability is violated, motivating quantum-like models. We re-examine this claim for the Prisoner's Dilemma disjunction effect. Under the mental-event reading of the opponent-choice events, the conventional classical decision-process model implicitly builds in a certainty-only premise: its standard partition assumptions leave no room for ambiguity, forcing every participant to be certain that the opponent will defect or will cooperate. We relax this by introducing a new classical model in which each participant carries a continuous expectation parameter representing the anticipated likelihood of opponent defection, and the participant pool is partitioned by expectation level; the resulting ambiguity set is precisely the union of the interior expectation bins. In contrast, under the quantum-like event semantics, ambiguous pure states are generic (dense and of full unitarily invariant measure on the unit sphere), so "certainty states" are mathematically exceptional. We prove that an instance of our classical model can realize any empirically observed triple of defection rates across the three information conditions, including strong disjunction-effect patterns, while strictly obeying the classical law of total probability. We further prove that for any such triple produced by a standard quantum-like model of the same experiment, there exists a classical instance reproducing it exactly. In this sense, classical and quantum-like approaches have the same observable-rate expressiveness; their substantive difference lies in how ambiguity is represented and in their respective event semantics, not in a breakdown of classical probability.

A Synchronous EEG-fNIRS BCI: A Proof-of-Concept for Multimodal Avalanche Analysis of Motor Cognition in Older Adults

arXiv:2603.23358v1 Announce Type: new Abstract: This proof-of-concept study introduces a novel multimodal framework combining synchronized EEG-fNIRS modalities with neuronal avalanche analysis to identify early network dysfunction in Alzheimer's disease. The approach leverages complementary neural signals to examine motor network dynamics during execution and imagery tasks within an interactive task environment. Preliminary analysis of a small pilot cohort (N=4 subjects, including one with Mild Cognitive Impairment) validated the technical feasibility of the multimodal framework and revealed observable condition-dependent patterns in network organization. Two primary observations emerged: a reduced neural contrast between motor execution and imagery states, and increased trial-to-trial variability in network organization in the MCI participant. These initial results successfully validate the technical pipeline and provide hypothesis-generating observations for future statistically powered studies. The convergence of findings across modalities suggests that multimodal assessment of network flexibility may help detect functional changes in early Alzheimer's continuum, supporting the future development of this BCI-inspired framework into an engaging diagnostic tool.

The Coordinate System Problem in Persistent Structural Memory for Neural Architectures

arXiv:2603.22858v1 Announce Type: cross Abstract: We introduce the Dual-View Pheromone Pathway Network (DPPN), an architecture that routes sparse attention through a persistent pheromone field over latent slot transitions, and use it to discover two independent requirements for persistent structural memory in neural networks. Through five progressively refined experiments using up to 10 seeds per condition across 5 model variants and 4 transfer targets, we identify a core principle: persistent memory requires a stable coordinate system, and any coordinate system learned jointly with the model is inherently unstable. We characterize three obstacles -- pheromone saturation, surface-structure entanglement, and coordinate incompatibility -- and show that neither contrastive updates, multi-source distillation, Hungarian alignment, nor semantic decomposition resolves the instability when embeddings are learned from scratch. Fixed random Fourier features provide extrinsic coordinates that are stable, structure-blind, and informative, but coordinate stability alone is insufficient: routing-bias pheromone does not transfer (10 seeds, p>0.05). DPPN outperforms transformer and random sparse baselines for within-task learning (AULC 0.700 vs 0.680 vs 0.670). Replacing routing bias with learning-rate modulation eliminates negative transfer: warm pheromone as a learning-rate prior achieves +0.003 on same-family tasks (17 seeds, p

Defining causal mechanism in dual process theory and two types of feedback control

arXiv:2602.11478v2 Announce Type: replace Abstract: Mental events are considered to supervene on physical events. A supervenient event does not change without a corresponding change in the underlying subvenient physical events. Since wholes and their parts exhibit the same supervenience-subvenience relations, inter-level causation has been expected to serve as a model for mental causation. We proposed an inter-level causation mechanism to construct a model of consciousness and an agent's self-determination. However, a significant gap exists between this mechanism and cognitive functions. Here, we demonstrate how to integrate the inter-level causation mechanism with the widely known dual-process theories. We assume that the supervenience level is composed of multiple supervenient functions (i.e., neural networks), and we argue that inter-level causation can be achieved by controlling the feedback error defined through changing algebraic expressions combining these functions. Using inter-level causation allows for a dual laws model in which each level possesses its own distinct dynamics. In this framework, the feedback error is determined independently by two processes: (1) the selection of equations combining supervenient functions, and (2) the negative feedback error reduction to satisfy the equations through adjustments of neurons and synapses. We interpret these two independent feedback controls as Type 1 and Type 2 processes in the dual process theories. As a result, theories of consciousness, agency, and dual process theory are unified into a single framework, and the characteristic features of Type 1 and Type 2 processes are naturally derived.
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