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Received — 2 April 2026 ⏭

Four Generations of Quantum Biomedical Sensors

✇cs.AI, q-bio.NC updates on arXiv.org
By: Xin Jin · Priyam Srivastava · Ronghe Wang · Yuqing Li · Jonathan Beaumariage · Tom Purdy · M. V. Gurudev Dutt · Kang Kim · Kaushik Seshadreesan · Junyu Liu
1 April 2026 at 12:00
arXiv:2603.29944v1 Announce Type: cross Abstract: Quantum sensing technologies offer transformative potential for ultra-sensitive biomedical sensing, yet their clinical translation remains constrained by classical noise limits and a reliance on macroscopic ensembles. We propose a unifying generational framework to organize the evolving landscape of quantum biosensors based on their utilization of quantum resources. First-generation devices utilize discrete energy levels for signal transduction but follow classical scaling laws. Second-generation sensors exploit quantum coherence to reach the standard quantum limit, while third-generation architectures leverage entanglement and spin squeezing to approach Heisenberg-limited precision. We further define an emerging fourth generation characterized by the end-to-end integration of quantum sensing with quantum learning and variational circuits, enabling adaptive inference directly within the quantum domain. By analyzing critical parameters such as bandwidth matching and sensor-tissue proximity, we identify key technological bottlenecks and propose a roadmap for transitioning from measuring physical observables to extracting structured biological information with quantum-enhanced intelligence.

GUIDE: Resolving Domain Bias in GUI Agents through Real-Time Web Video Retrieval and Plug-and-Play Annotation

✇cs.AI, q-bio.NC updates on arXiv.org
By: Rui Xie · Zhi Gao · Chenrui Shi · Zirui Shang · Lu Chen · Qing Li
1 April 2026 at 12:00
arXiv:2603.26266v2 Announce Type: replace Abstract: Large vision-language models have endowed GUI agents with strong general capabilities for interface understanding and interaction. However, due to insufficient exposure to domain-specific software operation data during training, these agents exhibit significant domain bias - they lack familiarity with the specific operation workflows (planning) and UI element layouts (grounding) of particular applications, limiting their real-world task performance. In this paper, we present GUIDE (GUI Unbiasing via Instructional-Video Driven Expertise), a training-free, plug-and-play framework that resolves GUI agent domain bias by autonomously acquiring domain-specific expertise from web tutorial videos through a retrieval-augmented automated annotation pipeline. GUIDE introduces two key innovations. First, a subtitle-driven Video-RAG pipeline unlocks video semantics through subtitle analysis, performing progressive three-stage retrieval - domain classification, topic extraction, and relevance matching - to identify task-relevant tutorial videos. Second, a fully automated annotation pipeline built on an inverse dynamics paradigm feeds consecutive keyframes enhanced with UI element detection into VLMs, inferring the required planning and grounding knowledge that are injected into the agent's corresponding modules to address both manifestations of domain bias. Extensive experiments on OSWorld demonstrate GUIDE's generality as a plug-and-play component for both multi-agent systems and single-model agents. It consistently yields over 5% improvements and reduces execution steps - without modifying any model parameters or architecture - validating GUIDE as an architecture-agnostic enhancement to bridge GUI agent domain bias.

The 1000 Chinese Pangenome empowers medical and population genetics

✇Nature - Issue - nature.com science feeds
By: Yifei Wang · Zhongqu Duan · Dan Chen · Dandan Shi · Yi Ding · Zhibin Wang · Baoqing Li · Zhiyi Wang · Minmin Guo · Wen Yang · Junren Hou · Wenhao Chen · Yazhou Guo · Wenjie Wei · Yujie Cao · Xiwei Sun · Weiyang Bai · Mingdong Lu · Ting Qi · Xian Shen · Jian Yang
1 April 2026 at 08:00

Nature, Published online: 01 April 2026; doi:10.1038/s41586-026-10315-y

Development of the pangenome-informed genome assembly (PIGA) workflow enabled the generation of 1,116 diploid genome assemblies (55 de novo and 1,061 pangenome-informed), representing an extensive resource of medically relevant genic variations.
Received — 26 March 2026 ⏭

Three Creates All: You Only Sample 3 Steps

✇cs.AI, q-bio.NC updates on arXiv.org
By: Yuren Cai · Guangyi Wang · Zongqing Li · Li Li · Zhihui Liu · Songzhi Su
25 March 2026 at 12:00
arXiv:2603.22375v1 Announce Type: cross Abstract: Diffusion models deliver high-fidelity generation but remain slow at inference time due to many sequential network evaluations. We find that standard timestep conditioning becomes a key bottleneck for few-step sampling. Motivated by layer-dependent denoising dynamics, we propose Multi-layer Time Embedding Optimization (MTEO), which freeze the pretrained diffusion backbone and distill a small set of step-wise, layer-wise time embeddings from reference trajectories. MTEO is plug-and-play with existing ODE solvers, adds no inference-time overhead, and trains only a tiny fraction of parameters. Extensive experiments across diverse datasets and backbones show state-of-the-art performance in the few-step sampling and substantially narrow the gap between distillation-based and lightweight methods. Code will be available.

From Context to Intent: Reasoning-Guided Function-Level Code Completion

✇cs.AI, q-bio.NC updates on arXiv.org
By: Yanzhou Li · Tianlin Li · Yiran Zhang · Shangqing Liu · Aishan Liu · Xianglong Liu · Yang Liu
25 March 2026 at 12:00
arXiv:2508.09537v2 Announce Type: replace-cross Abstract: The growing capabilities of Large Language Models (LLMs) have led to their widespread adoption for function completion within code repositories. Recent studies on such tasks show promising results when explicit instructions, often in the form of docstrings, are available to guide the completion. However, in real-world scenarios, clear docstrings are frequently absent. Under such conditions, LLMs typically fail to produce accurate completions. To enable more automated and accurate function completion in such settings, we aim to enable LLMs to accurately infer the developer's intent prior to code completion. Our key insight is that the preceding code, namely the code context before the function to be completed, often contains valuable cues that help the model understand the intended functionality. However, inferring intent from such implicit context is non-trivial and constitutes a core challenge in function-level code completion. To tackle this challenge, inspired by how humans interpret context, we propose a reasoning-based prompting framework that guides LLMs to utilize these contextual cues to infer intent step by step. To incentivize LLMs to reason through the preceding code and infer intent, we further curate a dataset of 40k examples, each annotated with intermediate reasoning traces and corresponding docstrings. Extensive experiments on DevEval and ComplexCodeEval demonstrate consistent performance improvements across multiple models, achieving over 25% relative gains in pass@1 for both DeepSeekCoder and CodeLLaMA families. Building upon our framework, we further develop an intent-interactive platform that supports lightweight human feedback. This platform allows developers to select from a set of candidate intentions or edit the intent to better guide the model. Our experiments show that this interactive approach leads to further performance improvements.

The dual regulatory role of METTL14-mediated m<sup>6</sup>A modification in tumorigenesis and its underlying mechanisms

✇Omics in Hepatocellular
By: Yulan Yang · Lemuge Chao · Xudong Ao · Junqing Liang
20 March 2026 at 18:00

Front Oncol. 2026 Mar 4;16:1771313. doi: 10.3389/fonc.2026.1771313. eCollection 2026.

ABSTRACT

N6-methyladenosine (m6A), as the most abundant RNA epitranscriptional modification in eukaryotes, its key component of the methyltransferase complex, METTL14, not only cooperates in catalyzing m6A deposition but also has functions independent of methyltransferase activity. This article systematically reviews the dual regulatory role of METTL14 in tumors and its molecular mechanisms, mainly organizing the relevant research in a logical sequence of "tumor suppressive effect - tumor promoting effect - controversial or context-dependent". Studies have shown that METTL14 often plays a tumor suppressive role in tumors such as hepatocellular carcinoma and colorectal cancer, while in pancreatic cancer and nasopharyngeal carcinoma, it mostly promotes malignant progression, showing a high degree of context dependence. This article focuses on two key mechanisms: on the one hand, METTL14 precisely regulates the processing, stability, and function of non-coding RNAs (including miRNAs, lncRNAs, and circRNAs) through m6A modification, reshaping the competitive endogenous RNA (ceRNA) network; on the other hand, it shapes an immunosuppressive tumor microenvironment by directly upregulating immune checkpoints such as PD-L1, mediating metabolism-immune interactions, and regulating the function of immune cells. Its functional duality also stems from the selective regulation of key pathways such as PI3K/AKT, as well as the differential interpretation by different m6A readers (such as YTHDF2 and IGF2BPs). Given the close association of these mechanisms with clinical prognosis, the expression level of METTL14 shows significant potential as a prognostic marker and therapeutic target; in the future, it is necessary to combine single-cell multi-omics and other technologies to analyze its dynamic regulatory network in specific tumor contexts and explore precise treatment strategies based on synthetic lethality or targeting downstream effector molecules.

PMID:41858346 | PMC:PMC12995618 | DOI:10.3389/fonc.2026.1771313

Received — 17 March 2026 ⏭

SkillsBench: Benchmarking How Well Agent Skills Work Across Diverse Tasks

✇cs.AI, q-bio.NC updates on arXiv.org
By: Xiangyi Li · Wenbo Chen · Yimin Liu · Shenghan Zheng · Xiaokun Chen · Yifeng He · Yubo Li · Bingran You · Haotian Shen · Jiankai Sun · Shuyi Wang · Binxu Li · Qunhong Zeng · Di Wang · Xuandong Zhao · Yuanli Wang · Roey Ben Chaim · Zonglin Di · Yipeng Gao · Junwei He · Yizhuo He · Liqiang Jing · Luyang Kong · Xin Lan · Jiachen Li · Songlin Li · Yijiang Li · Yueqian Lin · Xinyi Liu · Xuanqing Liu · Haoran Lyu · Ze Ma · Bowei Wang · Runhui Wang · Tianyu Wang · Wengao Ye · Yue Zhang · Hanwen Xing · Yiqi Xue · Steven Dillmann · Han-chung Lee
16 March 2026 at 12:00
arXiv:2602.12670v3 Announce Type: replace Abstract: Agent Skills are structured packages of procedural knowledge that augment LLM agents at inference time. Despite rapid adoption, there is no standard way to measure whether they actually help. We present SkillsBench, a benchmark of 86 tasks across 11 domains paired with curated Skills and deterministic verifiers. Each task is evaluated under three conditions: no Skills, curated Skills, and self-generated Skills. We test 7 agent-model configurations over 7,308 trajectories. Curated Skills raise average pass rate by 16.2 percentage points(pp), but effects vary widely by domain (+4.5pp for Software Engineering to +51.9pp for Healthcare) and 16 of 84 tasks show negative deltas. Self-generated Skills provide no benefit on average, showing that models cannot reliably author the procedural knowledge they benefit from consuming. Focused Skills with 2--3 modules outperform comprehensive documentation, and smaller models with Skills can match larger models without them.

OpenVision 3: A Family of Unified Visual Encoder for Both Understanding and Generation

✇cs.AI, q-bio.NC updates on arXiv.org
By: Letian Zhang · Sucheng Ren · Yanqing Liu · Xianhang Li · Zeyu Wang · Yuyin Zhou · Huaxiu Yao · Zeyu Zheng · Weili Nie · Guilin Liu · Zhiding Yu · Cihang Xie
16 March 2026 at 12:00
arXiv:2601.15369v2 Announce Type: replace-cross Abstract: This paper presents a family of advanced vision encoder, named OpenVision 3, that learns a single, unified visual representation that can serve both image understanding and image generation. Our core architecture is simple: we feed VAE-compressed image latents to a ViT encoder and train its output to support two complementary roles. First, the encoder output is passed to the ViT-VAE decoder to reconstruct the original image, encouraging the representation to capture generative structure. Second, the same representation is optimized with contrastive learning and image-captioning objectives, strengthening semantic features. By jointly optimizing reconstruction- and semantics-driven signals in a shared latent space, the encoder learns representations that synergize and generalize well across both regimes. We validate this unified design through extensive downstream evaluations with the encoder frozen. For generation, we test it under the RAE framework: ours substantially surpasses the standard CLIP-based encoder (e.g., gFID: 1.87 vs. 2.54 on ImageNet). For multimodal understanding, we plug the encoder into the LLaVA-1.5 and LLaVA-NeXT framework: it performs comparably with a standard CLIP vision encoder (e.g., 63.3 vs. 61.2 on SeedBench, and 59.2 vs. 58.1 on GQA). We provide empirical evidence that generation and understanding are mutually beneficial in our architecture, while further underscoring the critical role of the VAE latent space. We hope this work can spur future research on unified modeling.
Received — 11 March 2026 ⏭

How Long Can Unified Multimodal Models Generate Images Reliably? Taming Long-Horizon Interleaved Image Generation via Context Curation

✇cs.AI, q-bio.NC updates on arXiv.org
By: Haoyu Chen · Qing Liu · Yuqian Zhou · He Zhang · Zhaowen Wang · Mengwei Ren · Jingjing Ren · Xiang Wang · Zhe Lin · Lei Zhu
10 March 2026 at 12:00
arXiv:2603.07540v1 Announce Type: cross Abstract: Unified multimodal models hold the promise of generating extensive, interleaved narratives, weaving text and imagery into coherent long-form stories. However, current systems suffer from a critical reliability gap: as sequences grow, generation quality rapidly collapses. In this work, we investigate the mechanism behind this failure and argue that it is distinct from standard long-context challenges. We reveal that in generation, accumulated visual history acts as a source of active pollution, a decay governed specifically by the number of image events rather than raw token count. We identify a structural vulnerability where dense visual tokens overwhelm the attention mechanism, creating noise that distorts future synthesis. Guided by these mechanistic insights, we propose UniLongGen, a training-free inference strategy that prioritizes safe conditioning over total recall. Instead of retaining all history, UniLongGen dynamically curates the model's memory, identifying and discarding interfering visual signals based on the model's own internal relevance rankings. Extensive experiments demonstrate that this active forgetting approach is essential for stability: UniLongGen significantly outperforms baselines in long-horizon fidelity and consistency, while simultaneously reducing memory footprint and inference time.

SkillsBench: Benchmarking How Well Agent Skills Work Across Diverse Tasks

✇cs.AI, q-bio.NC updates on arXiv.org
By: Xiangyi Li · Wenbo Chen · Yimin Liu · Shenghan Zheng · Xiaokun Chen · Yifeng He · Yubo Li · Bingran You · Haotian Shen · Jiankai Sun · Shuyi Wang · Binxu Li · Qunhong Zeng · Di Wang · Xuandong Zhao · Yuanli Wang · Roey Ben Chaim · Zonglin Di · Yipeng Gao · Junwei He · Yizhuo He · Liqiang Jing · Luyang Kong · Xin Lan · Jiachen Li · Songlin Li · Yijiang Li · Yueqian Lin · Xinyi Liu · Xuanqing Liu · Haoran Lyu · Ze Ma · Bowei Wang · Runhui Wang · Tianyu Wang · Wengao Ye · Yue Zhang · Hanwen Xing · Yiqi Xue · Steven Dillmann · Han-chung Lee
10 March 2026 at 12:00
arXiv:2602.12670v2 Announce Type: replace Abstract: Agent Skills are structured packages of procedural knowledge that augment LLM agents at inference time. Despite rapid adoption, there is no standard way to measure whether they actually help. We present SkillsBench, a benchmark of 86 tasks across 11 domains paired with curated Skills and deterministic verifiers. Each task is evaluated under three conditions: no Skills, curated Skills, and self-generated Skills. We test 7 agent-model configurations over 7,308 trajectories. Curated Skills raise average pass rate by 16.2 percentage points(pp), but effects vary widely by domain (+4.5pp for Software Engineering to +51.9pp for Healthcare) and 16 of 84 tasks show negative deltas. Self-generated Skills provide no benefit on average, showing that models cannot reliably author the procedural knowledge they benefit from consuming. Focused Skills with 2--3 modules outperform comprehensive documentation, and smaller models with Skills can match larger models without them.
Received — 25 February 2026 ⏭

Adaptive Multi-Agent Reasoning for Text-to-Video Retrieval

✇cs.AI, q-bio.NC updates on arXiv.org
By: Jiaxin Wu · Xiao-Yong Wei · Qing Li
24 February 2026 at 13:00
arXiv:2602.19040v1 Announce Type: cross Abstract: The rise of short-form video platforms and the emergence of multimodal large language models (MLLMs) have amplified the need for scalable, effective, zero-shot text-to-video retrieval systems. While recent advances in large-scale pretraining have improved zero-shot cross-modal alignment, existing methods still struggle with query-dependent temporal reasoning, limiting their effectiveness on complex queries involving temporal, logical, or causal relationships. To address these limitations, we propose an adaptive multi-agent retrieval framework that dynamically orchestrates specialized agents over multiple reasoning iterations based on the demands of each query. The framework includes: (1) a retrieval agent for scalable retrieval over large video corpora, (2) a reasoning agent for zero-shot contextual temporal reasoning, and (3) a query reformulation agent for refining ambiguous queries and recovering performance for those that degrade over iterations. These agents are dynamically coordinated by an orchestration agent, which leverages intermediate feedback and reasoning outcomes to guide execution. We also introduce a novel communication mechanism that incorporates retrieval-performance memory and historical reasoning traces to improve coordination and decision-making. Experiments on three TRECVid benchmarks spanning eight years show that our framework achieves a twofold improvement over CLIP4Clip and significantly outperforms state-of-the-art methods by a large margin.

AI-driven Large-scale Electron Microscopy enables Whole-tissue Subcellular Digitization

✇cs.AI, q-bio.NC updates on arXiv.org
By: Li Xiao · Liqing Liu · Hongjun Wu · Jiayi Zhong · Xixia Li · Yan Zhang · Junjie Hu · Sun Fei · Ge Yang · Tao Xu
24 February 2026 at 13:00
arXiv:2511.02860v2 Announce Type: replace-cross Abstract: The distribution and interactions of cellular organelles play a critical role in mediating cellular physiology and pathology. Large-scale electron microscopy enables visualization of organelle distribution and interactions at the tissue level with nanometer resolution, but robust and efficient computational analysis tools are lacking. Here, we present a deep learning tool for universal large-scale 2D/3D electron microscopy analysis, DeepOrganelle. This new tool enables high-throughput, cell-resolved spatiotemporal mapping and digitization of organelle distribution and interactions. When applied to spermatogenesis across 12 stages and 22 differentiation status of the germ cells, DeepOrganelle uncovered previously unrecognized, stage-dependent dynamics of mitochondria-endoplasmic reticulum contact sites within one subphase of prophase I during meiosis. It also revealed coordinated organelle redistribution in Sertoli cells towards the blood-testis barrier, digitizing the remodeling dynamics of the tissue. This study demonstrates that DeepOrganelle provides a powerful framework that captures subcellular dynamics at the whole-tissue level.
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