arXiv:2609.09219v1 Announce Type: cross Abstract: AI research agents combine prior knowledge, public sources, and experimental feedback to produce useful results. The Discovery Certification Protocol (DCP) turns claims about these results into executable recovery and feedback tests. Gate 1 validates useful improvement on sealed evaluation. Gate 2 gives matched agents the registered starting information and observed Web content while withholding the target research history. Every valid method reaching the numerical target supplies a recovery witness and triggers the Core veto. DCP Core requires adequate controls, zero observed recoveries, and a finite-sample bound on recovery in one fresh registered episode. Optional Gate 3 measures the average effect of truthful feedback relative to a specified neutral policy from a shared checkpoint. DCP Evidence adds this effect after independent null calibration and a registered effect margin. Two controlled audits exercise the complete protocol in SQLite optimization and virtual catalyst control under different models. Each produced zero recoveries in 96 episodes, with an upper bound of 0.0468. Each paired study yielded 30 truthful recoveries and zero neutral recoveries, with passing 60-pair null studies. Additional cases exercise Core, recovered, and audit-incomplete decisions. A deterministic, LLM-free verifier reproduces the decisions from frozen evidence. DCP provides a common evidence language for useful outcomes, alternative routes, and feedback effects across AI research.

arXiv:2609.09242v1 Announce Type: cross Abstract: Large Language Models (LLMs) often generate natural-language comments while writing code, and these comments become part of the context used to generate the code that follows. However, it remains unclear which properties of comments affect code-generation performance. We study this question through observational analyses and controlled interventions. On LiveCodeBench, neither comment frequency nor broad comment intent reliably predicts pass@1. We then prefill weaker recipient models with comment blocks written by stronger source models, allowing us to separate comment surface form from the solution content they convey. Comments from source solutions that pass the tests raise recipient pass@1 by 17.2% on average. In contrast, comments describing failed solutions provide no reliable gain, while comments written for a different problem reduce pass@1 by 20.8%. Finally, across a wide range of models and prompt variants, most recipient models show no significant recovery of the external-comment gain, and the best case recovers only 24%. These results show that comments help code generation not merely because they are comments, but because they can provide correct solution content that prompting cannot reliably elicit.

arXiv:2609.09560v1 Announce Type: cross Abstract: This study evaluates Vibe Coding, an emerging AI-led conversational programming paradigm that enables developers to generate software through natural-language interaction with large language models. Using a mixed-methods design, the study assessed performance efficiency, cognitive implications, and responsible adoption in comparison with traditional and AI-assisted coding environments. Thirty participants, including professional developers and advanced computing students, completed equivalent programming tasks under three experimental conditions. Quantitative data were analyzed using descriptive statistics and repeated-measures ANOVA, while qualitative data were examined through thematic analysis. Results show that vibe coding significantly improved development efficiency, reducing task completion time by 27% compared with traditional coding and 12% compared with AI-assisted coding. However, these gains were accompanied by lower maintainability indices and higher security vulnerabilities, indicating trade-offs in software quality. Usability results yielded a good rating (SUS = 71.4), while cognitive workload remained moderate (NASA-TLX = 55.5), reflecting reduced syntactic effort but increased linguistic reasoning. Thematic analysis identified trust calibration, loss of control, cognitive adaptation, and prompt-engineering strategy as key constructs. Notably, perceived loss of control was associated with increased security risks due to reduced transparency and validation of AI-generated outputs. Based on these findings, the study proposes a three-pillar framework for responsible adoption: hybrid integration of human and AI capabilities, human oversight and transparent accountability, and context-aware deployment. Overall, vibe coding enhances productivity but requires critical oversight, reinforcing its role as a transformative yet transitional paradigm in software development.

arXiv:2609.09671v1 Announce Type: cross Abstract: When an agent writes code, the development framework becomes the control system for a non-deterministic worker. Spec-first, agent-driven frameworks have gained rapid traction since 2025; the installable ones, GitHub Spec Kit, obra/superpowers, BMAD, and GSD, and our own, all capture intent through a specification or durable planning artifacts. Since they agree on capturing intent up front, what separates them is how each enforces the engineering discipline that keeps agent-written code clean, correct, and maintainable. Every framework enforces that discipline somehow; they differ in how. We characterize three modes: enforcement by persuasion (prompt discipline the model may ignore), by front-loaded structure (strong specs, then a trusted build), and through controls the agent cannot edit (a deterministic orchestrator, human-approved gates, immutable tests, and a green result that must pass against a live, branched database). We introduce Consort, a spec-first, test-driven agent framework built on the third, enforcing that discipline through controls the agent runs inside but cannot bypass, in which a deterministic orchestrator drives separate role agents through a spec-first design lane and a test-driven build lane on a live database branch. We argue that enforcing the tests and gates in code keeps agent-written code honest and verifiable, while its specialized roles, like the human roles before them, are what make it maintainable, claims we frame as a pre-registered, testable hypothesis.

arXiv:2609.10132v1 Announce Type: cross Abstract: The development of generative artificial intelligence resources enables opportunities of speeding up systems and engineering design work. This contribution introduces a framework of formal operations for assembling context in LLM-based engineering design. This framework involves the assembly of modular context units, including policy prompts, reference units with persistence, and user questions with prompt vectoring. This approach enables the systematic structuring of interactions with generative models. A formal method for evaluating modelling-as-code LLM outputs is also presented, which enables the evaluation of compliance to intent from LLM answers and thereby asses the support from LLMs for systems architecture modelling.

arXiv:2609.10248v1 Announce Type: cross Abstract: Traditional software delivery assumes a static paradigm: code is constructed prior to execution and deployed as a fixed artifact. We present Agentic Just-In-Time Software Construction (A-JIT), a paradigm that replaces static binaries with dynamic, software systems that can perpetually evolve to meet changing demands. In A-JIT, an application is an integrated assembly comprising code, a runtime harness, and an embedded AI agent that continuously observes system usage and live execution traces. Much like a traditional JIT compiler specializes machine code to runtime execution paths, A-JIT specializes software logic, workflows, and tool interfaces to meet the specific needs of the end-user. By integrating synthesis directly into the ambient application lifecycle, A-JIT enables applications to dynamically construct missing implementations, generate new capabilities on the fly, and continuously adapt to end-user behavior. We demonstrate how this model supports trace-driven human-AI co-construction and opens a new design space for adaptive, self-evolving software.

arXiv:2608.24979v2 Announce Type: replace Abstract: Scientific agents increasingly analyze data, execute code, and produce research artifacts, yet most benchmarks emphasize final answers, isolated programs, or a single domain. We introduce FrontierChallenge, a cross-domain benchmark comprising 300 end-to-end scientific workflows. In this paper, we release and evaluate 97 of these tasks, spanning quantum chemistry, molecular dynamics, materials characterization, analytical chemistry, life science, and electrochemistry/environment. Each task provides fixed inputs and specifies a bundle of required scientific deliverables. We evaluate twelve frontier models with three agent scaffolds. Pass Rate measures the fraction of tasks satisfying the full-completion criterion, while Avg. Score captures partial progress. Each of the best-performing configurations completed only 20 of the 97 released tasks, yielding a Pass Rate of 20.6%. Partial progress translated especially poorly into complete delivery in analytical chemistry and electrochemistry/environment: Avg. Scores reached 87.6 and 94.9, but the highest Pass Rates were only 4% and 0%. Among non-passing Claude Code trajectories, 75.5% still ended with language claiming completion. Complementary HDS6 process scores correlate strongly with task outcomes, supporting FrontierChallenge as a benchmark of Heavy Duty Solver capabilities. These findings show that neither high partial scores nor confident claims of completion reliably indicate that a scientific task has been fully delivered, highlighting the need to evaluate end-to-end workflow execution and the completeness of scientific deliverables together.

arXiv:2609.08435v2 Announce Type: replace Abstract: In persistent interactions, long contexts may encode an evolving process rather than a fixed record: later events can revise or revoke earlier information, changing what remains valid and what conclusions follow. We call this setting information evolution (IE). Solving IE requires identifying valid records, applying updates in order, and reconstructing the query-relevant state from the event history. Existing text-first synthesis pipelines make such data difficult to verify because state transitions and answer logic remain implicit. We introduce EvolveScaler, a code-driven framework that defines information evolution before rendering it as natural language. Human-authored operational specifications define state transitions, record validity, difficulty controls, and executable answer logic; a strong LLM then synthesizes a self-contained simulator from each specification. Executing validated simulators produces natural-language multi-turn event histories, while deterministic replay computes reference answers and atomic checklists. We instantiate EvolveScaler with 117 task prototypes and 159 final-question operators across five difficulty levels spanning approximately 7 to 1,200 events per instance, yielding about 35,100 training examples and 585 validated evaluation instances. On the very_long tier, the strongest model reaches 59.3% avg@5, while six models score below 10%. Training an internal A3B model on 6,000 EvolveScaler examples improves performance over its base checkpoint on all eight independently constructed out-of-distribution benchmarks, with a 5.25-point average gain. These results show that code-driven IE synthesis provides both challenging evaluation and transferable training supervision.

arXiv:2408.02920v2 Announce Type: replace-cross Abstract: The rapid advancement of AI technology has led to widespread applications of agent systems across various domains. However, the need for detailed architecture design poses significant challenges in designing and operating these systems. This paper introduces a taxonomy focused on the architectures of foundation-model-based agents, addressing critical aspects such as functional capabilities and non-functional qualities. We also discuss the operations involved in both design-time and run-time phases, providing a comprehensive view of architectural design and operational characteristics. By unifying and detailing these classifications, our taxonomy aims to improve the design of foundation-model-based agents. Additionally, the paper establishes a decision model that guides critical design and runtime decisions, offering a structured approach to enhance the development of foundation-model-based agents. Our contributions include providing a structured architecture design option and guiding the development process of foundation-model-based agents, thereby addressing current fragmentation in the field.

arXiv:2604.00280v2 Announce Type: replace-cross Abstract: Formal specifications play a central role in ensuring software reliability, yet automatically synthesizing high-quality specifications remains difficult and often requires domain expertise. Recent work has applied large language models to generate specifications in the Java Modeling Language (JML), reporting high verifier pass rates. But passing a verifier only confirms that an implementation is consistent with a specification, not that the specification is meaningful. A trivial postcondition such as ensures true satisfies any verifier while saying nothing about the code. How much behavior, then, does a verifier-accepted specification actually capture? In this work, we first compare classical and prompt-based JML synthesis approaches under a unified setup, and find that prompt optimization through verification feedback raises pass rates but reaches a clear ceiling. We then introduce Spec-Harness, a framework that measures the behavioral adequacy of a specification along four dimensions of precondition and postcondition correctness and completeness, using Hoare-triple based symbolic verification and input/output mutation. Spec-Harness reveals that many verifier-accepted specifications, including optimized ones, are behaviorally weak, over- or under-constraining inputs and outputs in ways the verifier cannot see. Finally, we show that Spec-Harness works as a feedback signal that helps coding agents synthesize specifications with higher behavioral adequacy, including general-purpose agents such as Codex CLI and Claude Code, as well as VeriAct, a JML-specialized agent we build for this study.

arXiv:2605.21384v2 Announce Type: replace-cross Abstract: As long-horizon coding agents produce more code than any developer can review, oversight collapses onto a single surface: the automated test suite. Reward hacking naturally arises in this setup, as the agent optimizes for passing tests while deviating from the users true goal. We study this reward hacking phenomenon by decompose software engineering tasks into three parts: (i) a natural language description of the specification (ii) visible validation tests that exercise specified features in isolation, and (iii) held-out tests that compose those same features to simulate real-world usage. Based on the specification and the visible validation test suites, a genuine agent would be able to generate a solution that can also pass all of the held-out tests. Therefore we use the gap in pass rates on these two suites to quantify reward hacking. Based on this methodology, we introduce SpecBench, a benchmark comprising 30 systems-level programming tasks ranging from short horizon tasks like building a JSON parser to ultra long horizon tasks like building an entire OS kernel from scratch. Large-scale experiments reveal a consistent pattern: while every frontier agent saturates the visible suite, reward hacking persists, with smaller models exhibiting larger gaps on holdout suites. The gap also scales sharply with task length: it grows by 28 percentage points for every tenfold increase in code size. Failures range from subtle feature isolation to deliberate exploits, including a 2,900-line hash-table "compiler" that memorizes test inputs. SpecBench offers a principled testbed for measuring whether coding agents build genuine working systems or merely game the test suites developers hand them.

arXiv:2607.03215v2 Announce Type: replace-cross Abstract: Generative models now write application code, harden and monitor it, and probe it for exploitable flaws, so that one family of models increasingly plays builder, defender and breaker at once. The prevailing view treats full autonomy as the natural end point of assistance. This article argues for a narrower and more defensible position than a blanket requirement for human oversight. We define the shared generative substrate as the set of upstream dependencies (training corpus, model family, alignment procedure, vendor, toolchain) that induce correlated errors, and we define independence as a measurable property of pairs of lifecycle roles rather than an attribute of any participant. A coincident-failure model in the tradition of Eckhardt and Lee shows why organisational independence, the proxy on which verification standards have relied, no longer implies statistical independence once roles share a substrate; it also shows that heterogeneous models, deterministic analysers and formal verification can restore independence for the fault classes they cover. What remains for humans is specific: authority over the specification against which every machine oracle is judged, accountability that current governance instruments do not permit to be delegated, and last-resort authority to halt. We translate this into an operational framework with five autonomy levels, three distinct human roles and five decision criteria (consequence, reversibility, time-criticality, verifiability and adversarial exposure), apply it to build, defend and test actions, and specify how independence and oversight effectiveness can be measured. The central claims are stated as testable hypotheses with a protocol for refuting them.

arXiv:2605.23928v1 Announce Type: new Abstract: We present Context, the intelligence layer of the Magarshak Architecture, which replaces reactive query-response chatbots with proactive goal-directed agents that advance shared tasks without waiting for user prompts. The architecture rests on three mutually reinforcing mechanisms. Write-time context assembly precomputes enriched typed attributes via Groker agents, assembling interaction context as a deterministic pure function of graph state; context blocks are byte-identical across turns between semantic changes, enabling near-100% KV-cache reuse. Composable sandboxed wisdom programs form a governed library of LM-generated imperative programs declaratively wired to goal types via typed stream relations, composed via phase ordering, and executed at interaction time without further LM calls. Proactive goal stream state machines drive conversations toward terminal states by inspecting graph state and emitting structured interaction content (option arrays, governance affordances, clarification prompts) without awaiting user input. We prove six formal results: the Context Stability Theorem, bounding per-turn LM cost as a function of semantic change rate; a Program Composition Correctness Theorem; a Declarative Wiring Soundness Theorem; the Proactive Dominance Theorem, proving proactive agents weakly dominate reactive agents on expected turns-to-terminal-state; Coordination Overhead Elimination and Quality Preservation, establishing Pareto improvements in multi-participant goal chats; and a Cross-Platform Vote Consistency Theorem. Implemented in the open-source Qbix / Safebox / Safebots stack.

arXiv:2605.23929v1 Announce Type: new Abstract: Modern AI systems increasingly rely on workflows composed of multiple interacting agents, some powered by large language models (LLMs) and others by conventional computational modules. This paper analyzes the fundamental tradeoffs between latency, reliability, and cost in LLM-enabled agentic workflows. We introduce performance models for both LLM and non-LLM agents that capture the relationship between computational effort and output quality, incorporating the impact of reasoning and output tokens for LLM agents using a parametric exponential reliability function. Then, we study the design of sequential workflows under latency and cost constraints. Main results include a water-filling token allocation policy and characterizations of optimal workflow reliability in terms of shadow prices.

arXiv:2605.23931v1 Announce Type: new Abstract: The formal verification of operating system kernels requires precise specifications that capture the intended behavior of system calls. Writing these specifications manually demands deep domain expertise, motivating the use of large language models (LLMs) to automate the process. However, in OSV-Bench, a benchmark of 245 specification generation tasks derived from the Hyperkernel OS kernel, the best reported Pass@1 is 55.10%. We propose a domain knowledge prompting method (BODHI), which augments the standard few-shot prompt with a structured C-to-Python translation guide covering 15 categories of domain-specific translation patterns. Inspired by Structured Chain-of-Thought (SCoT) prompting, the guide organizes translation by separation of concerns, addressing pre-condition extraction and post-condition generation as distinct categories. Evaluated on nine models from six providers (Anthropic, Mistral, Amazon, DeepSeek, Meta, Alibaba), covering dense, mixture-of-experts and reasoning architectures, BODHI improves every model tested, with gains ranging from +11% to +32%. The best configuration (Claude Opus 4.6 + BODHI) reaches 96.73% Pass@1. BODHI reduces both syntax and semantic errors, with the strongest effect on models that have sufficient instruction-following capability to utilize structured reference material. These results demonstrate that domain knowledge injection is a model-agnostic technique that substantially bridges the gap between general-purpose code generation and formal specification synthesis.

arXiv:2605.23935v1 Announce Type: new Abstract: Autonomous agent systems fail not only due to incorrect decisions, but due to executing decisions whose authority no longer holds at runtime. Prior work defined Reconstructive Authority (RAM) as a condition for valid execution: actions are permitted only if authority can be constructed from current state. This paper addresses enforcement at runtime: how to enforce this condition in a running system. We introduce a runtime execution model in which authority is evaluated at action time and execution is conditioned on its constructibility. This extends the execution state space beyond admit/deny with a third state, halt, representing cases where authority is undefined due to incomplete or uncertain observability. We define a concrete execution protocol including dynamic dependency resolution, authority reconstruction, and explicit decision semantics. We further introduce a Recovery Loop that integrates drift detection (IML) with execution control (ACP), allowing the system to suspend execution, acquire missing information, and re-attempt authority reconstruction. We show that this model guarantees safety -- no action is executed without constructible authority -- and conditional liveness: execution resumes when authority-defining variables become observable. This work operationalizes reconstructive authority as a runtime enforcement mechanism, providing the execution semantics required to apply RAM in real systems.

arXiv:2605.23950v1 Announce Type: new Abstract: This position paper argues that, for long-horizon tasks evaluated across models with comparable frontier capability, the agent execution harness, namely the infrastructure layer that governs context construction, tool interaction, orchestration, and verification around a language model, is often a stronger determinant of agent performance than the model it wraps. We formalize and defend the Binding Constraint Thesis: in this regime, performance variance is governed more by harness configuration than by model choice, and current evaluation protocols therefore systematically misattribute harness-level gains to model improvements. We support this thesis along three lines. First, a control-theoretic formalization treats the harness as the controller of a closed-loop dynamical system and the LLM as the stochastic policy it governs, which explains why small harness changes can produce performance shifts that exceed those obtained by substituting one model for another. Second, published benchmarks, industry deployments, and a controlled variance decomposition show that harness-induced variance can substantially exceed model-induced variance, including cases of model ranking reversal. Third, we propose a harness-aware evaluation framework with a disclosure standard and a variance decomposition protocol. Until harness specifications are disclosed, leaderboard comparisons for long-horizon agents should be treated as incomplete and potentially misleading.

arXiv:2605.23965v1 Announce Type: new Abstract: Large Language Models (LLMs) achieve strong performance on logical reasoning benchmarks, yet their reliability remains uncertain. Existing evaluations rely on static benchmarks, which fail to assess robustness under logically equivalent transformations and often overestimate reasoning capability. We propose LGMT (Logic-Grounded Metamorphic Testing), an oracle-free framework that leverages first-order logic (FOL) to evaluate LLM reasoning. By deriving metamorphic relations from formal logical equivalences, LGMT constructs semantically invariant test cases and detects reasoning defects through cross-case consistency checking. Experiments on six state-of-the-art LLMs show that LGMT exposes substantial hidden defects missed by traditional reference-based evaluations. We further find that models are particularly sensitive to symbol-level and conclusion-level variations, and that advanced prompting such as Few-shot CoT only partially mitigates these issues. These results suggest that LLM evaluation should move beyond isolated correctness toward robustness under logical invariance. LGMT provides a principled and scalable approach for diagnosing reasoning failures.

arXiv:2605.24154v1 Announce Type: new Abstract: Current safety alignment of foundation models largely follows a \emph{one-size-fits-all} paradigm, applying the same refusal policy across users and contexts. As a result, models may refuse requests that are unsafe for general users but legitimate for authorized professionals, limiting helpfulness in specialized professional settings. Existing approaches either require costly realignment or rely on inference-time steering that suffers from imprecise control and added latency. To this end, we propose \textsc{Palette}, a modular, controllable, and efficient framework that selectively relaxes refusal behavior on authorized target domains while preserving standard safety elsewhere. Our method identifies a refusal direction via multi-objective search and internalizes it into the model through lightweight adaptation. \textsc{Palette} further supports modular composition: it learns domain-specific safety controls independently and composes them through parameter merging, enabling on-demand multi-domain authorization without retraining. Experiments across four safety benchmarks, multiple model variants, and both LLMs and VLMs show that \textsc{Palette} delivers precise safety control without sacrificing general utility, offering a practical path toward foundation models that adapt to diverse professional needs.

arXiv:2605.24383v1 Announce Type: new Abstract: Ethical constraints on open-weight AI models are both a reflection of societal concerns and a foundation for AI governance policy. They are expected to propagate to downstream derivatives while implemented as voluntary metadata disclosures that must be restated at each generation of reuse. We audit 2,142,823 model repositories on Hugging Face Hub to test whether this disclosure-based governance infrastructure can sustain traceability across deep model lineages. Restriction evidence decays with a half-life of 1.31 derivation steps ($R^2$=0.98), and beyond seven downstream generations at least 80% of descendant models lack sufficient public evidence for a governance determination, a depth boundary we formalize as the governance horizon. Platform-level interventions to restore missing licence metadata reveal that policy design (not enforcement alone) is the binding factor: inheritance-only designs require near-complete enforcement to move the horizon, whereas a mandatory-declaration design that explicitly resolves orphan lineage components shifts the horizon already at moderate enforcement. The structural bottleneck is lineages with no inheritable upstream intent: such orphan components remain undecidable under any inheritance-only policy regardless of enforcement rate, and unresolved upstream nodes additionally create direct downstream undecidability bottlenecks that inheritance rules alone cannot recover. Comparison with PyPI, where governance signals are carried by explicit machine-readable declarations, corroborates that the collapse is topology-specific to open-weight derivation rather than inherent to open ecosystems. These results establish that disclosure-based governance has a shallow, structurally determined reach in open-weight AI, and that achieving deep supply-chain accountability requires provenance mechanisms propagating governance signals through derivation itself.