Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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AdaRoPE: Not All Attention Heads Should Rotate and Scale Equally
arXiv:2607.19363v3 Announce Type: replace Abstract: Rotary Position Embedding (RoPE) is widely adopted in Transformers to encode positional information, yet standard implementations enforce a uniform frequency schedule and scaling across all attention heads. Using simplified retrieval tasks and length generalization scenarios, we show -- both empirically and theoretically -- that heads with different functional roles require distinct frequency ranges and attention scaling factors to operate eff
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Gut dysbiosis, metabolic signals, and pulmonary immune reprogramming: decoding the gut microbiota -immune axis in stroke-associated pneumonia
Front Immunol. 2026 Aug 27;17:1812306. doi: 10.3389/fimmu.2026.1812306. eCollection 2026.ABSTRACTStroke-associated pneumonia (SAP) is the most common infectious complication following acute stroke. The limited efficacy of conventional antimicrobial therapy suggests that SAP may be fundamentally a syndrome driven by dysregulated cross-system interactions. This review proposes the "gut microbiota-immune axis" (GMIA) as a comprehensive framework for the development of SAP and systematically discuss
Gut dysbiosis, metabolic signals, and pulmonary immune reprogramming: decoding the gut microbiota -immune axis in stroke-associated pneumonia
Front Immunol. 2026 Aug 27;17:1812306. doi: 10.3389/fimmu.2026.1812306. eCollection 2026.
ABSTRACT
Stroke-associated pneumonia (SAP) is the most common infectious complication following acute stroke. The limited efficacy of conventional antimicrobial therapy suggests that SAP may be fundamentally a syndrome driven by dysregulated cross-system interactions. This review proposes the "gut microbiota-immune axis" (GMIA) as a comprehensive framework for the development of SAP and systematically discusses the potential mechanisms by which post-stroke microbial-derived metabolic signals-including short-chain fatty acids (SCFAs), bile acids, tryptophan metabolites, and endotoxins-drive systemic immune reprogramming, predisposing patients to SAP. Based on the GMIA, we highlight several promising intervention strategies, including dietary modulation, precision antibiotic use, probiotics, fecal microbiota transplantation (FMT), supplementation with microbial metabolites, and receptor-targeted therapies, and summarize the current clinical translation related to the GMIA. Future research directions require high-quality clinical trials that integrate multi-omics data from the microbiome with immune biomarkers and clinical parameters. Such an approach is essential for constructing validated risk stratification models and advancing the management of SAP from empirical anti-infective treatment toward a precision medicine model centered on GMIA-based immune modulation.
PMID:42724580 | PMC:PMC13560329 | DOI:10.3389/fimmu.2026.1812306
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cs.AI, q-bio.NC updates on arXiv.org
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VectorArk: Learning Practical Image Vectorization with Rounded Polygon Representation
arXiv:2605.24398v1 Announce Type: cross Abstract: Recent vision-language model (VLM)-based approaches have achieved impressive results on image vectorization tasks. However, they are typically evaluated on synthetic benchmarks, where clean SVGs are rasterized at high resolution and then re-vectorized. As a result, these methods generalize poorly to real-world scenarios, such as images with unknown rasterization methods or those generated by text-to-image models. We introduce VectorArk, a new VL
VectorArk: Learning Practical Image Vectorization with Rounded Polygon Representation
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cs.AI, q-bio.NC updates on arXiv.org
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Step-TP: A Grounded, Step-Level Dataset with Chain-of-Thought Reasoning for LLM-Guided Tensor Program Optimization
arXiv:2605.25954v1 Announce Type: cross Abstract: Despite the strong reasoning capabilities of large language models (LLMs), optimizing the execution efficiency of tensor programs remains challenging due to the need for precise, composable transformation decisions. Recent LLM-guided approaches frame tensor program optimization as an iterative decision process, but existing datasets provide only end-to-end optimized program pairs using token-inefficient representations, lacking verifiable step-l
Step-TP: A Grounded, Step-Level Dataset with Chain-of-Thought Reasoning for LLM-Guided Tensor Program Optimization
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Nature - Issue - nature.com science feeds
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Asymmetric selection of a rice immune module and rebuild of disease resistance
Nature, Published online: 08 April 2026; doi:10.1038/s41586-026-10361-6Stacking XA48-mediated effector-triggered immunity with XA21-mediated pattern-triggered immunity in Oryza sativa japonica reconstitutes the broad-spectrum resistance from wild rice.
Asymmetric selection of a rice immune module and rebuild of disease resistance
Nature, Published online: 08 April 2026; doi:10.1038/s41586-026-10361-6
Stacking XA48-mediated effector-triggered immunity with XA21-mediated pattern-triggered immunity in Oryza sativa japonica reconstitutes the broad-spectrum resistance from wild rice.-
Cell
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Ferritin aggregation cell engager for CAR T avidity engineering against refractory leukemias
Li et al. developed a ferritin aggregation cell engager that helps CAR T cells better recognize and attack leukemia cells without re-engineering the CAR itself. This versatile platform overcomes antigen modulation and enables combination with chemotherapy.
Ferritin aggregation cell engager for CAR T avidity engineering against refractory leukemias
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Cell
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Hijacking ERAD for targeted degradation of transmembrane proteins
Development of an ERAD-hijacking technology overcomes the challenges of current targeted protein degradation approaches to achieve degradation of transmembrane proteins.
Hijacking ERAD for targeted degradation of transmembrane proteins
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cs.AI, q-bio.NC updates on arXiv.org
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FCMBench: The First Large-scale Financial Credit Multimodal Benchmark for Real-world Applications
arXiv:2601.00150v3 Announce Type: replace-cross Abstract: FCMBench is the first large-scale and privacy-compliant multimodal benchmark for real-world financial credit applications, covering tasks and robustness challenges from domain specific workflows and constraints. The current version of FCMBench covers 26 certificate types, with 5198 privacy-compliant images and 13806 paired VQA samples. It evaluates models on Perception and Reasoning tasks under real-world Robustness interferences, includ
FCMBench: The First Large-scale Financial Credit Multimodal Benchmark for Real-world Applications
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cs.AI, q-bio.NC updates on arXiv.org
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VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
arXiv:2602.19622v1 Announce Type: cross Abstract: Graph Transformer has demonstrated impressive capabilities in the field of graph representation learning. However, existing approaches face two critical challenges: (1) most models suffer from exponentially increasing computational complexity, making it difficult to scale to large graphs; (2) attention mechanisms based on node-level operations limit the flexibility of the model and result in poor generalization performance in out-of-distribution
VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
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cs.AI, q-bio.NC updates on arXiv.org
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(PASS) Visual Prompt Locates Good Structure Sparsity through a Recurrent HyperNetwork
arXiv:2407.17412v2 Announce Type: replace-cross Abstract: Large-scale neural networks have demonstrated remarkable performance in different domains like vision and language processing, although at the cost of massive computation resources. As illustrated by compression literature, structural model pruning is a prominent algorithm to encourage model efficiency, thanks to its acceleration-friendly sparsity patterns. One of the key questions of structural pruning is how to estimate the channel sig