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A Generative Foundation Model for Multimodal Histopathology

arXiv:2604.03635v1 Announce Type: cross Abstract: Accurate diagnosis and treatment of complex diseases require integrating histological, molecular, and clinical data, yet in practice these modalities are often incomplete owing to tissue scarcity, assay cost, and workflow constraints. Existing computational approaches attempt to impute missing modalities from available data but rely on task-specific models trained on narrow, single source-target pairs, limiting their generalizability. Here we introduce MuPD (Multimodal Pathology Diffusion), a generative foundation model that embeds hematoxylin and eosin (H&E)-stained histology, molecular RNA profiles, and clinical text into a shared latent space through a diffusion transformer with decoupled cross-modal attention. Pretrained on 100 million histology image patches, 1.6 million text-histology pairs, and 10.8 million RNA-histology pairs spanning 34 human organs, MuPD supports diverse cross-modal synthesis tasks with minimal or no task-specific fine-tuning. For text-conditioned and image-to-image generation, MuPD synthesizes histologically faithful tissue architectures, reducing Fr\'echet inception distance (FID) scores by 50% relative to domain-specific models and improving few-shot classification accuracy by up to 47% through synthetic data augmentation. For RNA-conditioned histology generation, MuPD reduces FID by 23% compared with the next-best method while preserving cell-type distributions across five cancer types. As a virtual stainer, MuPD translates H&E images to immunohistochemistry and multiplex immunofluorescence, improving average marker correlation by 37% over existing approaches. These results demonstrate that a single, unified generative model pretrained across heterogeneous pathology modalities can substantially outperform specialized alternatives, providing a scalable computational framework for multimodal histopathology.

Gray Anchoring: a New Computational Theory for Biological Color Constancy

arXiv:2410.08823v3 Announce Type: replace Abstract: It is still challenging for computer vision to imitate human color perception, e.g., color constancy, which is a fundamental perceptual ability in humans to perceive, interpret and interact with their surroundings. Among others, the anchoring theory provides impressive insights for human lightness perception, yet the specific anchoring rules underlying color constancy have remained contentious for decades. In this work, we introduced a novel computational theory - gray-anchoring (GA) theory - to explain how the early stage of visual system contributes to color constancy and demonstrate how our GA rule applies to the chromatic domain by identifying gray surfaces within complex scenes. Furthermore, we also demonstrate the potential neural implementation of gray-anchoring by quantitatively analyzing the computational flows of concentric double-opponent (DO) cells in V1. The simulational results show that the concentric DO cells have the ability to identify gray surfaces within color-biased scenes and these gray surfaces can then be used by the higher-level cortices to easily estimate the illuminant. This finding offers not only a clear functional explanation of the concentric DO receptive fields of this cell type in the visual system but also an effective and efficient solution to computational color constancy for computer vision.
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