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Crystalite: A Lightweight Transformer for Efficient Crystal Modeling

arXiv:2604.02270v1 Announce Type: cross Abstract: Generative models for crystalline materials often rely on equivariant graph neural networks, which capture geometric structure well but are costly to train and slow to sample. We present Crystalite, a lightweight diffusion Transformer for crystal modeling built around two simple inductive biases. The first is Subatomic Tokenization, a compact chemically structured atom representation that replaces high-dimensional one-hot encodings and is better suited to continuous diffusion. The second is the Geometry Enhancement Module (GEM), which injects periodic minimum-image pair geometry directly into attention through additive geometric biases. Together, these components preserve the simplicity and efficiency of a standard Transformer while making it better matched to the structure of crystalline materials. Crystalite achieves state-of-the-art results on crystal structure prediction benchmarks, and de novo generation performance, attaining the best S.U.N. discovery score among the evaluated baselines while sampling substantially faster than geometry-heavy alternatives.
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Pawsterior: Variational Flow Matching for Structured Simulation-Based Inference

arXiv:2602.13813v3 Announce Type: replace-cross Abstract: We introduce Pawsterior, a variational flow-matching framework for improved and extended simulation-based inference (SBI). Many SBI problems involve posteriors constrained by structured domains, such as bounded physical parameters or hybrid discrete-continuous variables, yet standard flow-matching methods typically operate in unconstrained spaces. This mismatch leads to inefficient learning and difficulty respecting physical constraints. Our contributions are twofold. First, generalizing the geometric inductive bias of CatFlow, we formalize endpoint-induced affine geometric confinement, a principle that incorporates domain geometry directly into the inference process via a two-sided variational model. This formulation improves numerical stability during sampling and leads to consistently better posterior fidelity, as demonstrated by improved classifier two-sample test performance across standard SBI benchmarks. Second, and more importantly, our variational parameterization enables SBI tasks involving discrete latent structure (e.g., switching systems) that are fundamentally incompatible with conventional flow-matching approaches. By addressing both geometric constraints and discrete latent structure, Pawsterior provides a principled way to apply flow-matching in a broader range of structured SBI settings.
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Pawsterior: Variational Flow Matching for Structured Simulation-Based Inference

arXiv:2602.13813v1 Announce Type: cross Abstract: We introduce Pawsterior, a variational flow-matching framework for improved and extended simulation-based inference (SBI). Many SBI problems involve posteriors constrained by structured domains, such as bounded physical parameters or hybrid discrete-continuous variables, yet standard flow-matching methods typically operate in unconstrained spaces. This mismatch leads to inefficient learning and difficulty respecting physical constraints. Our contributions are twofold. First, generalizing the geometric inductive bias of CatFlow, we formalize endpoint-induced affine geometric confinement, a principle that incorporates domain geometry directly into the inference process via a two-sided variational model. This formulation improves numerical stability during sampling and leads to consistently better posterior fidelity, as demonstrated by improved classifier two-sample test performance across standard SBI benchmarks. Second, and more importantly, our variational parameterization enables SBI tasks involving discrete latent structure (e.g., switching systems) that are fundamentally incompatible with conventional flow-matching approaches. By addressing both geometric constraints and discrete latent structure, Pawsterior extends flow-matching to a broader class of structured SBI problems that were previously inaccessible.
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