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Benchmarking Pathology Foundation Models for Spatial Domain Understanding

arXiv:2605.25764v1 Announce Type: cross Abstract: Pathology foundation models (PFMs) have emerged as a core approach for learning transferable representations from whole slide images (WSIs), and they are typically benchmarked through downstream clinical endpoints. While such task level evaluations are indispensable, they offer limited insight into what the representations themselves encode, particularly whether PFM embeddings can distinguish meaningful tissue regions and capture their spatial relationships. We present SpaPath-Bench, a representation level benchmark designed to diagnose spatial representation capability in PFMs. SpaPath-Bench formulates spatial domain identification (SDI) on paired whole slide image and spatial transcriptomics (ST) data as a diagnostic task. It curates 42 public paired WSI and ST slides, enables large scale evaluation across 19 encoders and seven SDI methods, and measures partition quality using three complementary criteria: unsupervised spatial coherence, transcriptomics referenced agreement, and expert referenced agreement. Across 83K runs, SpaPath-Bench reveals that different pretraining paradigms capture distinct aspects of tissue spatial architecture, and it provides practical guidance for building the next generation of spatially aware computational pathology models. Code and data pipelines are publicly available at https://bokai-zhao.github.io/SpaPath-benchboard/.
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AISA: Awakening Intrinsic Safety Awareness in Large Language Models against Jailbreak Attacks

arXiv:2602.13547v1 Announce Type: cross Abstract: Large language models (LLMs) remain vulnerable to jailbreak prompts that elicit harmful or policy-violating outputs, while many existing defenses rely on expensive fine-tuning, intrusive prompt rewriting, or external guardrails that add latency and can degrade helpfulness. We present AISA, a lightweight, single-pass defense that activates safety behaviors already latent inside the model rather than treating safety as an add-on. AISA first localizes intrinsic safety awareness via spatiotemporal analysis and shows that intent-discriminative signals are broadly encoded, with especially strong separability appearing in the scaled dot-product outputs of specific attention heads near the final structural tokens before generation. Using a compact set of automatically selected heads, AISA extracts an interpretable prompt-risk score with minimal overhead, achieving detector-level performance competitive with strong proprietary baselines on small (7B) models. AISA then performs logits-level steering: it modulates the decoding distribution in proportion to the inferred risk, ranging from normal generation for benign prompts to calibrated refusal for high-risk requests -- without changing model parameters, adding auxiliary modules, or requiring multi-pass inference. Extensive experiments spanning 13 datasets, 12 LLMs, and 14 baselines demonstrate that AISA improves robustness and transfer while preserving utility and reducing false refusals, enabling safer deployment even for weakly aligned or intentionally risky model variants.
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