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SoK: Agentic Retrieval-Augmented Generation (RAG): Taxonomy, Architectures, Evaluation, and Research Directions

arXiv:2603.07379v1 Announce Type: new Abstract: Retrieval-Augmented Generation (RAG) systems are increasingly evolving into agentic architectures where large language models autonomously coordinate multi-step reasoning, dynamic memory management, and iterative retrieval strategies. Despite rapid industrial adoption, current research lacks a systematic understanding of Agentic RAG as a sequential decision-making system, leading to highly fragmented architectures, inconsistent evaluation methodologies, and unresolved reliability risks. This Systematization of Knowledge (SoK) paper provides the first unified framework for understanding these autonomous systems. We formalize agentic retrieval-generation loops as finite-horizon partially observable Markov decision processes, explicitly modeling their control policies and state transitions. Building upon this formalization, we develop a comprehensive taxonomy and modular architectural decomposition that categorizes systems by their planning mechanisms, retrieval orchestration, memory paradigms, and tool-invocation behaviors. We further analyze the critical limitations of traditional static evaluation practices and identify severe systemic risks inherent to autonomous loops, including compounding hallucination propagation, memory poisoning, retrieval misalignment, and cascading tool-execution vulnerabilities. Finally, we outline key doctoral-scale research directions spanning stable adaptive retrieval, cost-aware orchestration, formal trajectory evaluation, and oversight mechanisms, providing a definitive roadmap for building reliable, controllable, and scalable agentic retrieval systems.
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SynPlanResearch-R1: Encouraging Tool Exploration for Deep Research with Synthetic Plans

arXiv:2603.07853v1 Announce Type: new Abstract: Research Agents enable models to gather information from the web using tools to answer user queries, requiring them to dynamically interleave internal reasoning with tool use. While such capabilities can in principle be learned via reinforcement learning with verifiable rewards (RLVR), we observe that agents often exhibit poor exploration behaviors, including premature termination and biased tool usage. As a result, RLVR alone yields limited improvements. We propose SynPlanResearch-R1, a framework that synthesizes tool-use trajectories that encourage deeper exploration to shape exploration during cold-start supervised fine-tuning, providing a strong initialization for subsequent RL. Across seven multi-hop and open-web benchmarks, \framework improves performance by up to 6.0% on Qwen3-8B and 5.8% on Qwen3-4B backbones respectively compared to SOTA baselines. Further analyses of tool-use patterns and training dynamics compared to baselines shed light on the factors underlying these gains. Our code is publicly available at https://github.com/HansiZeng/syn-plan-research.
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Advancing Automated Algorithm Design via Evolutionary Stagewise Design with LLMs

arXiv:2603.07970v1 Announce Type: new Abstract: With the rapid advancement of human science and technology, problems in industrial scenarios are becoming increasingly challenging, bringing significant challenges to traditional algorithm design. Automated algorithm design with LLMs emerges as a promising solution, but the currently adopted black-box modeling deprives LLMs of any awareness of the intrinsic mechanism of the target problem, leading to hallucinated designs. In this paper, we introduce Evolutionary Stagewise Algorithm Design (EvoStage), a novel evolutionary paradigm that bridges the gap between the rigorous demands of industrial-scale algorithm design and the LLM-based algorithm design methods. Drawing inspiration from CoT, EvoStage decomposes the algorithm design process into sequential, manageable stages and integrates real-time intermediate feedback to iteratively refine algorithm design directions. To further reduce the algorithm design space and avoid falling into local optima, we introduce a multi-agent system and a "global-local perspective" mechanism. We apply EvoStage to the design of two types of common optimizers: designing parameter configuration schedules of the Adam optimizer for chip placement, and designing acquisition functions of Bayesian optimization for black-box optimization. Experimental results across open-source benchmarks demonstrate that EvoStage outperforms human-expert designs and existing LLM-based methods within only a couple of evolution steps, even achieving the historically state-of-the-art half-perimeter wire-length results on every tested chip case. Furthermore, when deployed on a commercial-grade 3D chip placement tool, EvoStage significantly surpasses the original performance metrics, achieving record-breaking efficiency. We hope EvoStage can significantly advance automated algorithm design in the real world, helping elevate human productivity.
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Evidence-Driven Reasoning for Industrial Maintenance Using Heterogeneous Data

arXiv:2603.08171v1 Announce Type: new Abstract: Industrial maintenance platforms contain rich but fragmented evidence, including free-text work orders, heterogeneous operational sensors or indicators, and structured failure knowledge. These sources are often analyzed in isolation, producing alerts or forecasts that do not support conditional decision-making: given this asset history and behavior, what is happening and what action is warranted? We present Condition Insight Agent, a deployed decision-support framework that integrates maintenance language, behavioral abstractions of operational data, and engineering failure semantics to produce evidence-grounded explanations and advisory actions. The system constrains reasoning through deterministic evidence construction and structured failure knowledge, and applies a rule-based verification loop to suppress unsupported conclusions. Case studies from production CMMS deployments show that this verification-first design operates reliably under heterogeneous and incomplete data while preserving human oversight. Our results demonstrate how constrained LLM-based reasoning can function as a governed decision-support layer for industrial maintenance.
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Trust via Reputation of Conviction

arXiv:2603.08575v1 Announce Type: new Abstract: The question of \emph{knowledge}, \emph{truth} and \emph{trust} is explored via a mathematical formulation of claims and sources. We define truth as the reproducibly perceived subset of knowledge, formalize sources as having both generative and discriminative roles, and develop a framework for reputation grounded in the \emph{conviction} -- the likelihood that a source's stance is vindicated by independent consensus. We argue that conviction, rather than correctness or faithfulness, is the principled basis for trust: it is regime-independent, rewards genuine contribution, and demands the transparent and self-sufficient perceptions that make external verification possible. We formalize reputation as the expected weighted signed conviction over a realm of claims, characterize its behavior across source-claim regimes, and identify continuous verification as both a theoretical necessity and a practical mechanism through which reputation accrues. The framework is applied to AI agents, which are identified as capable but error-prone sources for whom verifiable conviction and continuously accrued reputation constitute the only robust foundation for trust.
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Evaluating Financial Intelligence in Large Language Models: Benchmarking SuperInvesting AI with LLM Engines

arXiv:2603.08704v1 Announce Type: new Abstract: Large language models are increasingly used for financial analysis and investment research, yet systematic evaluation of their financial reasoning capabilities remains limited. In this work, we introduce the AI Financial Intelligence Benchmark (AFIB), a multi-dimensional evaluation framework designed to assess financial analysis capabilities across five dimensions: factual accuracy, analytical completeness, data recency, model consistency, and failure patterns. We evaluate five AI systems: GPT, Gemini, Perplexity, Claude, and SuperInvesting, using a dataset of 95+ structured financial analysis questions derived from real-world equity research tasks. The results reveal substantial differences in performance across models. Within this benchmark setting, SuperInvesting achieves the highest aggregate performance, with an average factual accuracy score of 8.96/10 and the highest completeness score of 56.65/70, while also demonstrating the lowest hallucination rate among evaluated systems. Retrieval-oriented systems such as Perplexity perform strongly on data recency tasks due to live information access but exhibit weaker analytical synthesis and consistency. Overall, the results highlight that financial intelligence in large language models is inherently multi-dimensional, and systems that combine structured financial data access with analytical reasoning capabilities provide the most reliable performance for complex investment research workflows.
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ARC-AGI-2 Technical Report

arXiv:2603.06590v1 Announce Type: cross Abstract: The Abstraction and Reasoning Corpus (ARC) is designed to assess generalization beyond pattern matching, requiring models to infer symbolic rules from very few examples. In this work, we present a transformer-based system that advances ARC performance by combining neural inference with structure-aware priors and online task adaptation. Our approach is built on four key ideas. First, we reformulate ARC reasoning as a sequence modeling problem using a compact task encoding with only 125 tokens, enabling efficient long-context processing with a modified LongT5 architecture. Second, we introduce a principled augmentation framework based on group symmetries, grid traversals, and automata perturbations, enforcing invariance to representation changes. Third, we apply test-time training (TTT) with lightweight LoRA adaptation, allowing the model to specialize to each unseen task by learning its transformation logic from demonstrations. Fourth, we design a symmetry-aware decoding and scoring pipeline that aggregates likelihoods across augmented task views, effectively performing ``multi-perspective reasoning'' over candidate solutions. We demonstrate that these components work synergistically: augmentations expand hypothesis space, TTT sharpens local reasoning, and symmetry-based scoring improves solution consistency. Our final system achieves a significant improvement over transformer baselines and surpasses prior neural ARC solvers, closing the gap toward human-level generalization.
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A Coin Flip for Safety: LLM Judges Fail to Reliably Measure Adversarial Robustness

arXiv:2603.06594v1 Announce Type: cross Abstract: Automated \enquote{LLM-as-a-Judge} frameworks have become the de facto standard for scalable evaluation across natural language processing. For instance, in safety evaluation, these judges are relied upon to evaluate harmfulness in order to benchmark the robustness of safety against adversarial attacks. However, we show that existing validation protocols fail to account for substantial distribution shifts inherent to red-teaming: diverse victim models exhibit distinct generation styles, attacks distort output patterns, and semantic ambiguity varies significantly across jailbreak scenarios. Through a comprehensive audit using 6642 human-verified labels, we reveal that the unpredictable interaction of these shifts often causes judge performance to degrade to near random chance. This stands in stark contrast to the high human agreement reported in prior work. Crucially, we find that many attacks inflate their success rates by exploiting judge insufficiencies rather than eliciting genuinely harmful content. To enable more reliable evaluation, we propose ReliableBench, a benchmark of behaviors that remain more consistently judgeable, and JudgeStressTest, a dataset designed to expose judge failures. Data available at: https://github.com/SchwinnL/LLMJudgeReliability.
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Pavement Missing Condition Data Imputation through Collective Learning-Based Graph Neural Networks

arXiv:2603.06625v1 Announce Type: cross Abstract: Pavement condition data is important in providing information regarding the current state of the road network and in determining the needs of maintenance and rehabilitation treatments. However, the condition data is often incomplete due to various reasons such as sensor errors and non-periodic inspection schedules. Missing data, especially data missing systematically, presents loss of information, reduces statistical power, and introduces biased assessment. Existing methods in dealing with missing data usually discard entire data points with missing values or impute through data correlation. In this paper, we used a collective learning-based Graph Convolutional Networks, which integrates both features of adjacent sections and dependencies between observed section conditions to learn missing condition values. Unlike other variants of graph neural networks, the proposed approach is able to capture dependent relationship between the conditions of adjacent pavement sections. In the case study, pavement condition data collected from Texas Department of Transportation Austin District were used. Experiments show that the proposed model was able to produce promising results in imputing the missing data.
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SmartBench: Evaluating LLMs in Smart Homes with Anomalous Device States and Behavioral Contexts

arXiv:2603.06636v1 Announce Type: cross Abstract: Due to the strong context-awareness capabilities demonstrated by large language models (LLMs), recent research has begun exploring their integration into smart home assistants to help users manage and adjust their living environments. While LLMs have been shown to effectively understand user needs and provide appropriate responses, most existing studies primarily focus on interpreting and executing user behaviors or instructions. However, a critical function of smart home assistants is the ability to detect when the home environment is in an anomalous state. This involves two key requirements: the LLM must accurately determine whether an anomalous condition is present, and provide either a clear explanation or actionable suggestions. To enhance the anomaly detection capabilities of next-generation LLM-based smart home assistants, we introduce SmartBench, which is the first smart home dataset designed for LLMs, containing both normal and anomalous device states as well as normal and anomalous device state transition contexts. We evaluate 13 mainstream LLMs on this benchmark. The experimental results show that most state-of-the-art models cannot achieve good anomaly detection performance. For example, Claude-Sonnet-4.5 achieves only 66.1% detection accuracy on context-independent anomaly categories, and performs even worse on context-dependent anomalies, with an accuracy of only 57.8%. More experimental results suggest that next-generation LLM-based smart home assistants are still far from being able to effectively detect and handle anomalous conditions in the smart home environment. Our dataset is publicly available at https://github.com/horizonsinzqs/SmartBench.
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PaLMR: Towards Faithful Visual Reasoning via Multimodal Process Alignment

arXiv:2603.06652v1 Announce Type: cross Abstract: Reinforcement learning has recently improved the reasoning ability of Large Language Models and Multimodal LLMs, yet prevailing reward designs emphasise final-answer correctness and consequently tolerate process hallucinations--cases where models reach the right answer while misperceiving visual evidence. We address this process-level misalignment with PaLMR, a framework that aligns not only outcomes but also the reasoning process itself. PaLMR comprises two complementary components: a perception-aligned data layer that constructs process-aware reasoning data with structured pseudo-ground-truths and verifiable visual facts, and a process-aligned optimisation layer that constructs a hierarchical reward fusion scheme with a process-aware scoring function to encourage visually faithful chains-of-thought and improve training stability. Experiments on Qwen2.5-VL-7B show that our approach substantially reduces reasoning hallucinations and improves visual reasoning fidelity, achieving state-of-the-art results on HallusionBench while maintaining strong performance on MMMU, MathVista, and MathVerse. These findings indicate that PaLMR offers a principled and practical route to process-aligned multimodal reasoning, advancing the reliability and interpretability of MLLMs.
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Science Literacy: Generative AI as Enabler of Coherence in the Teaching, Learning, and Assessment of Scientific Knowledge and Reasoning

arXiv:2603.06659v1 Announce Type: cross Abstract: This chapter examines the potential of generative AI in enhancing science literacy across the K-16+ grade span, including its benefits as well as the conceptual and practical challenges that doing so presents. It begins with a discussion of what defines science literacy in the era of AI, including how AI has changed science and the demand for future citizens to be scientifically literate when AI is applied in their careers and lives. The chapter further discusses why science literacy presents such a challenge in K-16+ educational settings. It then develops an argument for the type of architecture needed for AI to assist in solving the problem by bringing coherence to the teaching, learning, and assessment of science knowledge and reasoning. Components of this architecture are illustrated with respect to the AI tools and capabilities needed for design and implementation. The chapter concludes with a consideration of what has been learned regarding both science literacy and AI, as well as what remains to be learned, including the research and development (R&D) needed, and the generalizability of this science literacy case to other disciplinary learning and knowledge domains.
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Better Eyes, Better Thoughts: Why Vision Chain-of-Thought Fails in Medicine

arXiv:2603.06665v1 Announce Type: cross Abstract: Large vision-language models (VLMs) often benefit from chain-of-thought (CoT) prompting in general domains, yet its efficacy in medical vision-language tasks remains underexplored. We report a counter-intuitive trend: on medical visual question answering, CoT frequently underperforms direct answering (DirA) across general-purpose and medical-specific models. We attribute this to a \emph{medical perception bottleneck}: subtle, domain-specific cues can weaken visual grounding, and CoT may compound early perceptual uncertainty rather than correct it. To probe this hypothesis, we introduce two training-free, inference-time grounding interventions: (i) \emph{perception anchoring} via region-of-interest cues and (ii) \emph{description grounding} via high-quality textual guidance. Across multiple benchmarks and model families, these interventions improve accuracy, mitigate CoT degradation, and in several settings reverse the CoT--DirA inversion. Our findings suggest that reliable clinical VLMs require robust visual grounding and cross-modal alignment, beyond extending text-driven reasoning chains. Code is available \href{https://github.com/TianYin123/Better_Eyes_Better_Thoughts}{here}.
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Chart Deep Research in LVLMs via Parallel Relative Policy Optimization

arXiv:2603.06677v1 Announce Type: cross Abstract: With the rapid advancement of data science, charts have evolved from simple numerical presentation tools to essential instruments for insight discovery and decision-making support. However, current chart data intelligence exhibits significant limitations in deep research capabilities, with existing methods predominantly addressing shallow tasks such as visual recognition or factual question-answering, rather than the complex reasoning and high-level data analysis that deep research requires. This limitation stems from two primary technical bottlenecks: at the training level, existing post-training techniques exhibit deficiencies in handling multi-dimensional reward signal interference and heterogeneous data gradient conflicts, preventing models from achieving balanced development across multiple capability dimensions; at the evaluation level, current methods remain limited to factual retrieval and basic computation, failing to assess end-to-end analytic reasoning and other deep research capabilities. To address the training challenge, we propose PRPO, which performs parallel optimization across reward dimensions and capability partitioning across data types, effectively disentangling conflicts between heterogeneous data and multi-dimensional reward signals while ensuring optimization stability. For the evaluation challenge, we construct MCDR-Bench based on the ``error uniqueness principle," transforming subjective generation assessment into objective error identification through controllable error injection, enabling quantifiable evaluation of deep research capabilities. Experimental validation confirms that the proposed PRPO and MCDR-Bench jointly establish a unified framework that systematically advances chart deep research through enhanced collaborative training and objective evaluation.
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Narrative Weaver: Towards Controllable Long-Range Visual Consistency with Multi-Modal Conditioning

arXiv:2603.06688v1 Announce Type: cross Abstract: We present "Narrative Weaver", a novel framework that addresses a fundamental challenge in generative AI: achieving multi-modal controllable, long-range, and consistent visual content generation. While existing models excel at generating high-fidelity short-form visual content, they struggle to maintain narrative coherence and visual consistency across extended sequences - a critical limitation for real-world applications such as filmmaking and e-commerce advertising. Narrative Weaver introduces the first holistic solution that seamlessly integrates three essential capabilities: fine-grained control, automatic narrative planning, and long-range coherence. Our architecture combines a Multimodal Large Language Model (MLLM) for high-level narrative planning with a novel fine-grained control module featuring a dynamic Memory Bank that prevents visual drift. To enable practical deployment, we develop a progressive, multi-stage training strategy that efficiently leverages existing pre-trained models, achieving state-of-the-art performance even with limited training data. Recognizing the absence of suitable evaluation benchmarks, we construct and release the E-commerce Advertising Video Storyboard Dataset (EAVSD) - the first comprehensive dataset for this task, containing over 330K high-quality images with rich narrative annotations. Through extensive experiments across three distinct scenarios (controllable multi-scene generation, autonomous storytelling, and e-commerce advertising), we demonstrate our method's superiority while opening new possibilities for AI-driven content creation.
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Scaling Agentic Capabilities, Not Context: Efficient Reinforcement Finetuning for Large Toolspaces

arXiv:2603.06713v1 Announce Type: cross Abstract: Agentic systems operating over large tool ecosystems must plan and execute long-horizon workflows under weak or non-verifiable supervision. While frontier models mitigate these challenges through scale and large context budgets, small language models (SLMs) remain brittle: eager tool loading saturates context, execution errors compound over time, and sparse rewards limit learning. We introduce ATLAS, a reinforcement finetuning framework that enables SLMs to operate effectively in large-scale toolspace environments by learning how to acquire context and how to execute actions. Our approach makes two key contributions. First, we treat context control and execution structure as learnable decisions, combining iterative tool loading with programmatic tool orchestration to bound context growth and stabilize long-horizon trajectories. Second, we propose rubric-based reinforcement finetuning, which decomposes task success into structured, task-aligned criteria and enables scalable training using small judge models. Across MCP benchmarks, these design choices yield large and consistent gains over generic RL baselines, allowing a 4B SLM to approach frontier-agent performance under far tighter parameter and context budgets.
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Dynamic Targeting of Satellite Observations Using Supplemental Geostationary Satellite Data and Hierarchical Planning

arXiv:2603.06719v1 Announce Type: cross Abstract: The Dynamic Targeting (DT) mission concept is an approach to satellite observation in which a lookahead sensor gathers information about the upcoming environment and uses this information to intelligently plan observations. Previous work has shown that DT has the potential to increase the science return across applications. However, DT mission concepts must address challenges, such as the limited spatial extent of onboard lookahead data and instrument mobility, data throughput, and onboard computation constraints. In this work, we show how the performance of DT systems can be improved by using supplementary data streamed from geostationary satellites that provide lookahead information up to 35 minutes ahead of time rather than the 1 minute latency from an onboard lookahead sensor. While there is a greater volume of geostationary data, the search space for observation planning explodes exponentially with the size of the horizon. To address this, we introduce a hierarchical planning approach in which the geostationary data is used to plan a long-term observation blueprint in polynomial time, then the onboard lookahead data is leveraged to refine that plan over short-term horizons. We compare the performance of our approach to that of traditional DT planners relying on onboard lookahead data across four different problem instances: three cloud avoidance variations and a storm hunting scenario. We show that our hierarchical planner outperforms the traditional DT planners by up to 41% and examine the features of the scenarios that affect the performance of our approach. We demonstrate that incorporating geostationary satellite data is most effective for dynamic problem instances in which the targets of interest are sparsely distributed throughout the overflight.
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ProtAlign: Contrastive learning paradigm for Sequence and structure alignment

arXiv:2603.06722v1 Announce Type: cross Abstract: Protein language models often take into consideration the alignment between a protein sequence and its textual description. However, they do not take structural information into consideration. Traditional methods treat sequence and structure separately, limiting the ability to exploit the alignment between the structure and protein sequence embeddings. In this paper, we introduce a sequence structure contrastive alignment framework, which learns a shared embedding space where proteins are represented consistently across modalities. By training on large-scale pairs of sequences and experimentally resolved or predicted structures, the model maximizes agreement between matched sequence structure pairs while pushing apart unrelated pairs. This alignment enables cross-modal retrieval (e.g., finding structural neighbors given a sequence), improves downstream prediction tasks such as function annotation and stability estimation, and provides interpretable links between sequence variation and structural organization. Our results demonstrate that contrastive learning can serve as a powerful bridge between protein sequences and structures, offering a unified representation for understanding and engineering proteins.
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Bi Directional Feedback Fusion for Activity Aware Forecasting of Indoor CO2 and PM2.5

arXiv:2603.06724v1 Announce Type: cross Abstract: Indoor air quality (IAQ) forecasting plays a critical role in safeguarding occupant health, ensuring thermal comfort, and supporting intelligent building control. However, predicting future concentrations of key pollutants such as carbon dioxide (CO2) and fine particulate matter (PM2.5) remains challenging due to the complex interplay between environmental factors and highly dynamic occupant behaviours. Traditional data driven models primarily rely on historical sensor trajectories and often fail to anticipate behaviour induced emission spikes or rapid concentration shifts. To address these limitations, we present a dual stream bi directional feedback fusion framework that jointly models indoor environmental evolution and action derived embeddings representing human activities. The proposed architecture integrates a context aware modulation mechanism that adaptively scales and shifts each stream based on a shared, evolving fusion state, enabling the model to selectively emphasise behavioural cues or long term environmental trends. Furthermore, we introduce dual timescale temporal modules that independently capture gradual CO2 accumulation patterns and short term PM2.5 fluctuations. A composite loss function combining weighted mean squared error, spike aware penalties, and uncertainty regularisation facilitates robust learning under volatile indoor conditions. Extensive validation on real-world IAQ datasets demonstrates that our approach significantly outperforms state of the art forecasting baselines while providing interpretable uncertainty estimates essential for practical deployment in smart buildings and health-aware monitoring systems.
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Safe Transformer: An Explicit Safety Bit For Interpretable And Controllable Alignment

arXiv:2603.06727v1 Announce Type: cross Abstract: Current safety alignment methods encode safe behavior implicitly within model parameters, creating a fundamental opacity: we cannot easily inspect why a model refuses a request, nor intervene when its safety judgments fail. We propose Safe Transformer, a modular approach that augments pre-trained language models by inserting a discrete information bottleneck containing an explicit safety bit between transformer layers. The safety bit serves as both an interpretable signal of the model's safety classification and a controllable switch: through contrastive training, the model learns disentangled representations where the safety bit governs the behavioral mode - producing helpful responses when $s=1$ and refusals when $s=0$ - while additional unsupervised bits $u$ encode semantic content for generation. Additional unsupervised bits in the information bottleneck allow semantic information to flow through, preserving the model's generation capabilities. This design achieves both interpretability (the safety decision is directly readable) and controllability (the safety bit can be manually overridden), requiring only lightweight fine-tuning without pre-training from scratch. In red-team benchmarks, Safe Transformer achieves near-zero Attack Success Rate, substantially outperforming base models and safety fine-tuning baselines.
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