Microbiome and metabolite signatures for cirrhosis to HCC risk stratification: progress, controversies, and gaps

(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)

By: Yanan Duan · Mengting Yang · Miaomiao Li · Yu Sun · Shiguo Liu

1 April 2026 at 18:00

Front Cell Infect Microbiol. 2026 Mar 16;16:1793213. doi: 10.3389/fcimb.2026.1793213. eCollection 2026.

ABSTRACT

The progression from cirrhosis to hepatocellular carcinoma (HCC) is a key outcome in the management of chronic liver disease. This process has a long incubation period and significant individual differences, making early warning still difficult. Clinical follow-up mainly relies on imaging examinations and alpha fetoprotein, but the ability to identify high risk precancerous states is limited. The imbalance of gut microbiota and its metabolites may occur earlier than the visible stage of tumors. They can affect barrier integrity, chronic inflammation, immune surveillance, and metabolic homeostasis through the gut liver axis, and participate in the formation of a pro tumor microenvironment. Therefore, such changes may provide more upstream risk stratification clues for the population with cirrhosis. This article summarizes previous research evidence and summarizes the common microbiome and metabolite characteristics of cirrhosis and high-risk populations, including a decrease in short chain fatty acid (SCFA) related symbiotic bacteria, an increase in inflammation related bacteria, bile acid spectrum shift, and other intestinal derived metabolite abnormalities. This article also outlines the key mechanisms that these features may correspond to, such as barrier damage and microbial translocation, immune suppression, etc. There are still significant uncertainties at present. The effect of SCFA is context dependent. Different etiologies, diets, medications, and complications can lead to significant confounding and affect cross cohort consistency. Subsequent research requires longitudinal cohort validation and the promotion of multi omics integration and the construction of interpretable predictive models to support clinical translation.

PMID:41918873 | PMC:PMC13033666 | DOI:10.3389/fcimb.2026.1793213

EVA: Efficient Reinforcement Learning for End-to-End Video Agent

cs.AI, q-bio.NC updates on arXiv.org

By: Yaolun Zhang · Ruohui Wang · Jiahao Wang · Yepeng Tang · Xuanyu Zheng · Haonan Duan · Hao Lu · Hanming Deng · Lewei Lu

25 March 2026 at 12:00

arXiv:2603.22918v1 Announce Type: cross Abstract: Video understanding with multimodal large language models (MLLMs) remains challenging due to the long token sequences of videos, which contain extensive temporal dependencies and redundant frames. Existing approaches typically treat MLLMs as passive recognizers, processing entire videos or uniformly sampled frames without adaptive reasoning. Recent agent-based methods introduce external tools, yet still depend on manually designed workflows and perception-first strategies, resulting in inefficiency on long videos. We present EVA, an Efficient Reinforcement Learning framework for End-to-End Video Agent, which enables planning-before-perception through iterative summary-plan-action-reflection reasoning. EVA autonomously decides what to watch, when to watch, and how to watch, achieving query-driven and efficient video understanding. To train such agents, we design a simple yet effective three-stage learning pipeline - comprising supervised fine-tuning (SFT), Kahneman-Tversky Optimization (KTO), and Generalized Reward Policy Optimization (GRPO) - that bridges supervised imitation and reinforcement learning. We further construct high-quality datasets for each stage, supporting stable and reproducible training. We evaluate EVA on six video understanding benchmarks, demonstrating its comprehensive capabilities. Compared with existing baselines, EVA achieves a substantial improvement of 6-12% over general MLLM baselines and a further 1-3% gain over prior adaptive agent methods. Our code and model are available at https://github.com/wangruohui/EfficientVideoAgent.

Automated Proof Generation for Rust Code via Self-Evolution

cs.AI, q-bio.NC updates on arXiv.org

By: Tianyu Chen · Shuai Lu · Shan Lu · Yeyun Gong · Chenyuan Yang · Xuheng Li · Md Rakib Hossain Misu · Hao Yu · Nan Duan · Peng Cheng · Fan Yang · Shuvendu K Lahiri · Tao Xie · Lidong Zhou

17 February 2026 at 13:00

arXiv:2410.15756v3 Announce Type: replace-cross Abstract: Ensuring correctness is crucial for code generation. Formal verification offers a definitive assurance of correctness, but demands substantial human effort in proof construction and hence raises a pressing need for automation. The primary obstacle lies in the severe lack of data-there is much fewer proofs than code snippets for Large Language Models (LLMs) to train upon. In this paper, we introduce SAFE, a framework that overcomes the lack of human-written proofs to enable automated proof generation of Rust code. SAFE establishes a self-evolving cycle where data synthesis and fine-tuning collaborate to enhance the model capability, leveraging the definitive power of a symbolic verifier in telling correct proofs from incorrect ones. SAFE also re-purposes the large number of synthesized incorrect proofs to train the self-debugging capability of the fine-tuned models, empowering them to fix incorrect proofs based on the verifier's feedback. SAFE demonstrates superior efficiency and precision compared to GPT-4o. Through tens of thousands of synthesized proofs and the self-debugging mechanism, we improve the capability of open-source models, initially unacquainted with formal verification, to automatically write proofs for Rust code. This advancement leads to a significant improvement in performance, achieving a 52.52% accuracy rate in a benchmark crafted by human experts, a significant leap over GPT-4o's performance of 14.39%.

Reading view