100x Cost & Latency Reduction: Performance Analysis of AI Query Approximation using Lightweight Proxy Models

By: Yeounoh Chung, Rushabh Desai, Jian He, Yu Xiao, Thibaud Hottelier, Yves-Laurent Kom Samo, Pushkar Khadilkar, Xianshun Chen, Sam Idicula, Fatma \"Ozcan, Alon Halevy, Yannis Papakonstantinou

3 April 2026 at 12:00

arXiv:2603.15970v5 Announce Type: replace-cross Abstract: Several data warehouse and database providers have recently introduced extensions to SQL called AI Queries, enabling users to specify functions and conditions in SQL that are evaluated by LLMs, thereby broadening significantly the kinds of queries one can express over the combination of structured and unstructured data. LLMs offer remarkable semantic reasoning capabilities, making them an essential tool for complex and nuanced queries that blend structured and unstructured data. While extremely powerful, these AI queries can become prohibitively costly when invoked thousands of times. This paper provides an extensive evaluation of a recent AI query approximation approach that enables low cost analytics and database applications to benefit from AI queries. The approach delivers >100x cost and latency reduction for the semantic filter operator and also important gains for semantic ranking. The cost and performance gains come from utilizing cheap and accurate proxy models over embedding vectors. We show that despite the massive gains in latency and cost, these proxy models preserve accuracy and occasionally improve accuracy across various benchmark datasets, including the extended Amazon reviews benchmark that has 10M rows. We present an OLAP-friendly architecture within Google BigQuery for this approach for purely online (ad hoc) queries, and a low-latency HTAP database-friendly architecture in AlloyDB that could further improve the latency by moving the proxy model training offline. We present techniques that accelerate the proxy model training.

100x Cost & Latency Reduction: Performance Analysis of AI Query Approximation using Lightweight Proxy Models

cs.AI, q-bio.NC updates on arXiv.org

By: Yeounoh Chung, Rushabh Desai, Jian He, Yu Xiao, Thibaud Hottelier, Yves-Laurent Kom Samo, Pushkar Khadilkar, Xianshun Chen, Sam Idicula, Fatma \"Ozcan, Alon Halevy, Yannis Papakonstantinou

1 April 2026 at 12:00

arXiv:2603.15970v4 Announce Type: replace-cross Abstract: Several data warehouse and database providers have recently introduced extensions to SQL called AI Queries, enabling users to specify functions and conditions in SQL that are evaluated by LLMs, thereby broadening significantly the kinds of queries one can express over the combination of structured and unstructured data. LLMs offer remarkable semantic reasoning capabilities, making them an essential tool for complex and nuanced queries that blend structured and unstructured data. While extremely powerful, these AI queries can become prohibitively costly when invoked thousands of times. This paper provides an extensive evaluation of a recent AI query approximation approach that enables low cost analytics and database applications to benefit from AI queries. The approach delivers >100x cost and latency reduction for the semantic filter operator and also important gains for semantic ranking. The cost and performance gains come from utilizing cheap and accurate proxy models over embedding vectors. We show that despite the massive gains in latency and cost, these proxy models preserve accuracy and occasionally improve accuracy across various benchmark datasets, including the extended Amazon reviews benchmark that has 10M rows. We present an OLAP-friendly architecture within Google BigQuery for this approach for purely online (ad hoc) queries, and a low-latency HTAP database-friendly architecture in AlloyDB that could further improve the latency by moving the proxy model training offline. We present techniques that accelerate the proxy model training.

A deep joint-learning proteomics model for diagnosis of six conditions associated with dementia

Nature Medicine

By: Lijun An · Alexa Pichet Binette · Ines Hristovska · Gabriele Vilkaite · Yu Xiao · Romina Zendehdel · Zijian Dong · Bart Smets · Rowan Saloner · Shinya Tasaki · Ying Xu · Varsha Krish · Farhad Imam · Shorena Janelidze · Danielle van Westen · Erik Stomrud · Christopher D. Whelan · Sebastian Palmqvist · Rik Ossenkoppele · Niklas Mattsson-Carlgren · Oskar Hansson · Jacob W. Vogel

31 March 2026 at 08:00

Nature Medicine, Published online: 31 March 2026; doi:10.1038/s41591-026-04303-y

ProtAIDe-Dx is a deep joint-learning model that uses plasma proteomics to provide simultaneous probabilistic diagnoses across six conditions associated with aging.

A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients

Omics In Lung

By: Jiangnan Zhao · Zijin Wang · Manyu Xiao · Yeyuan Zhang · Boxin Liu · Silin Chen · Yiping Tian · Dongqing Lv · Pingli Wang · Hai Song · Yuefeng Wu · Jian Liu · Kai Wang

30 March 2026 at 18:00

EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.

ABSTRACT

Lung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patients responding to IC exhibited significantly higher baseline levels of peripheral blood monocytes, tumor-infiltrating classical monocytes, and APOBEC3A+ monocytes across both compartments compared with non-responders. These associations were independently validated in additional cohorts using routine complete blood count testing and multiplex immunofluorescence analysis of native tumor tissues. Our findings reveal monocyte-related parameters as clinically accessible indicators that link systemic immunity with the tumor microenvironment and hold promise for predicting IC responsiveness in patients with LUSC.

PMID:41912871 | DOI:10.1038/s44321-026-00410-y

A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients

(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)

By: Jiangnan Zhao · Zijin Wang · Manyu Xiao · Yeyuan Zhang · Boxin Liu · Silin Chen · Yiping Tian · Dongqing Lv · Pingli Wang · Hai Song · Yuefeng Wu · Jian Liu · Kai Wang

30 March 2026 at 18:00

EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.

ABSTRACT

Lung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patients responding to IC exhibited significantly higher baseline levels of peripheral blood monocytes, tumor-infiltrating classical monocytes, and APOBEC3A+ monocytes across both compartments compared with non-responders. These associations were independently validated in additional cohorts using routine complete blood count testing and multiplex immunofluorescence analysis of native tumor tissues. Our findings reveal monocyte-related parameters as clinically accessible indicators that link systemic immunity with the tumor microenvironment and hold promise for predicting IC responsiveness in patients with LUSC.

PMID:41912871 | DOI:10.1038/s44321-026-00410-y

Proposed Role of Circadian Clock Genes in Pathogenesis of HCC: Molecular Subtyping and Characterization

Omics in Hepatocellular

By: Zhikui Lu · Yi Zhou · Jian Luo · Zhicheng Liu · Zhenyu Xiao

28 March 2026 at 18:00

Biomedicines. 2026 Mar 12;14(3):645. doi: 10.3390/biomedicines14030645.

ABSTRACT

Background: Hepatocellular carcinoma (HCC) stands as a prevalent global health issue with increasing incidence and mortality rates. Hepatocellular carcinoma (HCC) exhibits profound molecular and clinical heterogeneity, which limits the effectiveness of current therapeutic strategies. Circadian rhythm disruption has been implicated in metabolic reprogramming, proliferation, and immune modulation in cancer, but its role in shaping HCC heterogeneity remains poorly defined. Methods: Four public HCC transcriptomic cohorts (TCGA-LIHC, CHCC, LIRI, LICA) were integrated using RMA normalization and ComBat for batch correction. Consensus clustering based on 31 core circadian clock genes (CCGs) identified robust molecular subtypes. Multi-omics characterization-including genomic alterations, pathway activity (GSEA/GSVA), immune microenvironment profiling (CIBERSORT, EPIC, MCP-counter, xCell), and drug-sensitivity prediction (pRRophetic/oncoPredict)-was performed to delineate subtype-specific biological properties. A nine-gene CCG-based RiskScore model was constructed using LASSO Cox regression to internally validate subtype robustness and intra-subtype risk stratification. Results: Using consensus clustering of 31 core CCGs in TCGA-LIHC and three independent validation cohorts (CHCC, LIRI, LICA), we identified three reproducible subtypes-Cluster-1 (metabolic-quiescent), Cluster-2 (transition-intermediate), and Cluster-3 (proliferation-inflammatory)-which were recapitulated across cohorts and showed distinct overall survival (Cluster-3 worst; log-rank p values significant across datasets). Multi-omic characterization revealed that Cluster-3 exhibits the highest tumor mutational burden and CNV burden with enrichment of TP53/AXIN1/TERT alterations, strong activation of cell-cycle, E2F, and G2M programs, and an immune-hot yet immunosuppressed microenvironment enriched for TAMs, Tregs and MDSCs. By contrast, Cluster-1 shows relative genomic stability, dominant hepatic metabolic signatures (fatty-acid oxidation, bile-acid and xenobiotic metabolism) and an immune-cold phenotype. Single-cell mapping linked ALAS1 expression to malignant hepatocytes predominating in Cluster-1, whereas NONO and CSNK1D localized to stromal (CAFs/TECs) and both malignant/immune compartments respectively in Cluster-3, providing a cellular mechanism for subtype-specific metabolism, angiogenesis and immune modulation. Finally, a nine-gene CCG-based RiskScore validated prognostic stratification and drug-sensitivity predictions indicated subtype-specific therapeutic vulnerabilities (notably increased predicted TKI sensitivity in Cluster-3). Conclusion: In conclusion, this study proposes a robust circadian rhythm-based molecular classification of hepatocellular carcinoma, revealing three biologically and clinically distinct subtypes characterized by divergent genomic alterations, metabolic programs, immune microenvironment states, and prognostic patterns. By integrating bulk and single-cell transcriptomic data, we identify subtype-specific roles of key circadian regulators-including ALAS1, NONO, and CSNK1D-in shaping tumor metabolism, proliferation, stromal remodeling, and immune suppression. These findings highlight circadian dysregulation as a potential upstream factor associated with HCC heterogeneity and provide a conceptual framework for developing subtype-tailored mechanistic studies and circadian-informed therapeutic strategies.

PMID:41898292 | PMC:PMC13024568 | DOI:10.3390/biomedicines14030645

SmartBench: Evaluating LLMs in Smart Homes with Anomalous Device States and Behavioral Contexts

cs.AI, q-bio.NC updates on arXiv.org

By: Qingsong Zou · Zhi Yan · Zhiyao Xu · Kuofeng Gao · Jingyu Xiao · Yong Jiang

10 March 2026 at 12:00

arXiv:2603.06636v1 Announce Type: cross Abstract: Due to the strong context-awareness capabilities demonstrated by large language models (LLMs), recent research has begun exploring their integration into smart home assistants to help users manage and adjust their living environments. While LLMs have been shown to effectively understand user needs and provide appropriate responses, most existing studies primarily focus on interpreting and executing user behaviors or instructions. However, a critical function of smart home assistants is the ability to detect when the home environment is in an anomalous state. This involves two key requirements: the LLM must accurately determine whether an anomalous condition is present, and provide either a clear explanation or actionable suggestions. To enhance the anomaly detection capabilities of next-generation LLM-based smart home assistants, we introduce SmartBench, which is the first smart home dataset designed for LLMs, containing both normal and anomalous device states as well as normal and anomalous device state transition contexts. We evaluate 13 mainstream LLMs on this benchmark. The experimental results show that most state-of-the-art models cannot achieve good anomaly detection performance. For example, Claude-Sonnet-4.5 achieves only 66.1% detection accuracy on context-independent anomaly categories, and performs even worse on context-dependent anomalies, with an accuracy of only 57.8%. More experimental results suggest that next-generation LLM-based smart home assistants are still far from being able to effectively detect and handle anomalous conditions in the smart home environment. Our dataset is publicly available at https://github.com/horizonsinzqs/SmartBench.

Benchmarking MLLM-based Web Understanding: Reasoning, Robustness and Safety

cs.AI, q-bio.NC updates on arXiv.org

By: Junliang Liu · Jingyu Xiao · Wenxin Tang · Zhixian Wang · Zipeng Xie · Wenxuan Wang · Minrui Zhang · Shuanghe Yu

5 March 2026 at 13:00

arXiv:2509.21782v2 Announce Type: replace Abstract: Multimodal large language models (MLLMs) are increasingly deployed as the core reasoning engine for web-facing systems, powering GUI agents and front-end automation that must interpret page structure, select actionable widgets, and execute multi-step interactions reliably. However, existing benchmarks largely emphasize visual perception or UI code generation, showing insufficient evaluation on the reasoning, robustness and safety capability required for end-to-end web applications. To bridge the gap, we introduce a comprehensive web understanding benchmark, named WebRRSBench, that jointly evaluates Reasoning, Robustness, and Safety across eight tasks, such as position relationship reasoning, color robustness, and safety critical detection, etc. The benchmark is constructed from 729 websites and contains 3799 QA pairs that probe multi-step inference over page structure, text, widgets, and safety-critical interactions. To ensure reliable measurement, we adopt standardized prompts, a protocolized and deterministic evaluation pipeline, and multi-stage quality control combining automatic checks with targeted human verification. We evaluate 11 MLLMs on WebRRSBench. The results reveal significant gaps: models still struggle with compositional and cross-element reasoning over realistic layouts, show limited robustness when facing perturbations in user interfaces and content such as layout rearrangements or visual style shifts, and are rather conservative in recognizing and avoiding safety critical or irreversible actions. Our code and appendix are available at https: //github.com/annoy-worker/WebRSSBench.

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