arXiv:2603.06639v1 Announce Type: cross Abstract: Robust perception in brains is often attributed to high-dimensional population activity together with local plasticity mechanisms that reinforce recurring structure. In contrast, most modern image recognition systems are trained by error backpropagation and end-to-end gradient optimization, which are not naturally aligned with local computation and local plasticity. We introduce RECAP (Reservoir Computing with Hebbian Co-Activation Prototypes), a bio-inspired learning strategy for robust image classification that couples untrained reservoir dynamics with a self-organizing Hebbian prototype readout. RECAP discretizes time-averaged reservoir responses into activation levels, constructs a co-activation mask over reservoir unit pairs, and incrementally updates class-wise prototype matrices via a Hebbian-like potentiation-decay rule. Inference is performed by overlap-based prototype matching. The method avoids error backpropagation and is naturally compatible with online prototype updates. We illustrate the resulting robustness behavior on MNIST-C, where RECAP remains robust under diverse corruptions without exposure to corrupted training samples.

arXiv:2603.06816v1 Announce Type: cross Abstract: The alignment problem refers to concerns regarding powerful intelligences, ensuring compatibility with human preferences and values as capabilities increase. Current large language models (LLMs) show misaligned behaviors, such as strategic deception, manipulation, and reward-seeking, that can arise despite safety training. Gaining a mechanistic understanding of these failures requires empirical approaches that can isolate behavioral patterns in controlled settings. We propose that biological misalignment precedes artificial misalignment, and leverage the Dark Triad of personality (narcissism, psychopathy, and Machiavellianism) as a psychologically grounded framework for constructing model organisms of misalignment. In Study 1, we establish comprehensive behavioral profiles of Dark Triad traits in a human population (N = 318), identifying affective dissonance as a central empathic deficit connecting the traits, as well as trait-specific patterns in moral reasoning and deceptive behavior. In Study 2, we demonstrate that dark personas can be reliably induced in frontier LLMs through minimal fine-tuning on validated psychometric instruments. Narrow training datasets as small as 36 psychometric items resulted in significant shifts across behavioral measures that closely mirrored human antisocial profiles. Critically, models generalized beyond training items, demonstrating out-of-context reasoning rather than memorization. These findings reveal latent persona structures within LLMs that can be readily activated through narrow interventions, positioning the Dark Triad as a validated framework for inducing, detecting, and understanding misalignment across both biological and artificial intelligence.

arXiv:2603.07364v1 Announce Type: cross Abstract: The standard engineering approach when facing uncertainty is modelling. Mixing data from a well-calibrated model with real recordings has led to breakthroughs in many applications of AI, from computer vision to autonomous driving. This type of model-based data augmentation is now beginning to show promising results in biosignal processing as well. However, while these simulated data are necessary, they are not sufficient for virtual neurophysiological experiments. Simply generating neural signals that reproduce a predetermined motor behaviour does not capture the flexibility, variability, and causal structure required to probe neural mechanisms during control tasks. In this study, we present an in silico neuromechanical model that combines a fully forward musculoskeletal simulation, reinforcement learning, and sequential, online electromyography synthesis. This framework provides not only synchronised kinematics, dynamics, and corresponding neural activity, but also explicitly models feedback and feedforward control in a virtual participant. In this way, online control problems can be represented, as the simulated human adapts its behaviour via a learned RL policy in response to a neural interface. For example, the virtual user can learn hand movements robust to perturbations or the control of a virtual gesture decoder. We illustrate the approach using a gesturing task within a biomechanical hand model, and lay the groundwork for using this technique to evaluate neural controllers, augment training datasets, and generate synthetic data for neurological conditions.

arXiv:2603.08409v1 Announce Type: cross Abstract: Although commonly associated with limbless animals like snakes and fish, multi-legged organisms like centipedes also utilize undulatory locomotion. Whether these undulations are actively reinforced or resisted by the axial musculature remains an open question. We present a dynamical model of centipede locomotion that integrates leg-ground interactions, passive body mechanics, and active lateral musculature. By varying stepping rate, actuation, and body stiffness, we examine how locomotor strategies affect speed and an effective energetic efficiency. Coordination emerges only when body stiffness is tuned to stepping frequency: overly flexible bodies lose synchrony, while overly rigid ones move slowly and inefficiently. We make a falsifiable prediction, measurable with a non-invasive experiment, that centipedes utilize speed dependent active stiffness to maintain this coordination. Our results suggest that lateral muscles also have a speed dependent function, revealed by optimizing speed and an effective cost, that resists a phase lag between leg touchdowns and body curvature. Together, we find that centipedes actively modulate body mechanics to achieve rapid, efficient locomotion, highlighting how complex control can emerge from embodied physical properties rather than solely from neural computation.

arXiv:2502.13606v2 Announce Type: replace Abstract: Understanding the property of neural populations (or voxels) in the human brain can advance our comprehension of human perceptual and cognitive processing capabilities and contribute to developing brain-inspired computer models. Recent encoding models using deep neural networks (DNNs) have successfully predicted voxel-wise activity. However, interpreting the properties that explain voxel responses remains challenging because of the black-box nature of DNNs. As a solution, we propose LLM-assisted Visual Cortex Captioning (LaVCa), a data-driven approach that uses large language models (LLMs) to generate natural-language captions for images to which voxels are selective. By applying LaVCa for image-evoked brain activity, we demonstrate that LaVCa generates captions that describe voxel selectivity more accurately than the previously proposed method. Furthermore, the captions generated by LaVCa quantitatively capture more detailed properties than the existing method at both the inter-voxel and intra-voxel levels. Furthermore, a more detailed analysis of the voxel-specific properties generated by LaVCa reveals fine-grained functional differentiation within regions of interest (ROIs) in the visual cortex and voxels that simultaneously represent multiple distinct concepts. These findings offer profound insights into human visual representations by assigning detailed captions throughout the visual cortex while highlighting the potential of LLM-based methods in understanding brain representations.

arXiv:2508.01920v2 Announce Type: replace Abstract: Identifying causal interactions in complex dynamical systems is a fundamental challenge across the computational sciences. Existing functional connectivity methods capture correlations but not causation. While addressing directionality, popular causal inference tools such as Granger causality and the Peter-Clark algorithm rely on restrictive assumptions that limit their applicability to high-resolution time-series data, such as the large-scale recordings now standard in neuroscience. Here, we introduce CITS (Causal Inference in Time Series), a nonparametric framework for inferring statistically causal structure from multivariate time series. CITS models dynamics using a structural causal model of arbitrary Markov order and statistical tests for lagged conditional independence. We prove consistency under mild assumptions and demonstrate superior accuracy over state-of-the-art baselines across simulated linear, nonlinear, and recurrent neural network benchmarks. Applying CITS to large-scale neuronal recordings from the mouse visual cortex, thalamus, and hippocampus, we uncover stimulus-specific causal pathways and inter-regional hierarchies that align with known anatomy while revealing new functional insights. We further highlight CITS ability in accurately identifying conditional dependencies within small inferred neuronal motifs. These results establish CITS as a theoretically grounded and empirically validated method for discovering interpretable statistically causal networks in neural time series. Beyond neuroscience, the framework is broadly applicable to causal discovery in complex temporal systems across domains.

arXiv:2509.12783v2 Announce Type: replace Abstract: Inferring the biophysical parameters of conductance-based models (CBMs) from experimentally accessible recordings remains a central challenge in computational neuroscience. Spike times are the most widely available data, yet they reveal little about which combinations of ion channel conductances generate the observed activity. This inverse problem is further complicated by neuronal degeneracy, where multiple distinct conductance sets yield similar spiking patterns. We introduce a method that addresses this challenge by combining deep learning with Dynamic Input Conductances (DICs), a theoretical framework that reduces complex CBMs to three interpretable feedback components governing excitability and firing patterns. Our approach first maps spike times to DIC densities at threshold using a neural network that learns a low-dimensional representation of neuronal activity. The predicted DIC values are then used to generate degenerate CBM populations via an iterative compensation algorithm, ensuring compatibility with the intermediate target DICs, and thereby reproducing the corresponding firing patterns, even in high-dimensional models. Applied to two models, this algorithmic pipeline reconstructs spiking and bursting regimes with high accuracy and robustness to variability, including spike trains generated under noisy current injection mimicking physiological stochasticity. It produces diverse degenerate populations within milliseconds on standard hardware, enabling scalable and efficient inference from spike recordings alone. Together, this work positions DICs as a practical and interpretable link between experimentally observed activity and mechanistic models. By enabling fast and scalable reconstruction of degenerate populations directly from spike times, our approach provides a powerful way to investigate how neurons exploit conductance variability to achieve reliable computation.

arXiv:2602.01347v2 Announce Type: replace Abstract: Millions of users turn to consumer AI chatbots to discuss mental health and behavioral concerns. While this presents unprecedented opportunities to deliver population-level support, it also highlights an urgent need for rigorous and scalable safety evaluations. Here we introduce SIM-VAIL, an AI chatbot auditing framework that captures how harmful chatbot responses manifest across a range of mental health contexts. SIM-VAIL pairs a simulated user, harboring a distinct psychiatric vulnerability and conversational intent, with a frontier AI chatbot. It scores conversation turns on 13 clinically relevant risk dimensions, enabling context-dependent, temporally resolved safety assessment. Across 810 conversations, encompassing over 90,000 turn-level ratings and 30 psychiatric user profiles, we found evidence of concerning chatbot behavior across virtually all user phenotypes and most of the 9 consumer AI chatbots audited, albeit reduced in newer models. Rather than arising abruptly, concerning behavior accumulated over multiple turns. Risk profiles were phenotype-dependent and exhibited trade-offs, indicating that chatbot behaviors that appear supportive in general settings can become maladaptive when they align with mechanisms that sustain a user's vulnerability. These findings identify a systematic failure mode in human-AI interactions, which we term Vulnerability-Amplifying Interaction Loops (VAILs), and underscore the need for multidimensional approaches to risk quantification. SIM-VAIL provides a scalable framework for quantifying how mental health risk is distributed across user phenotypes, conversational trajectories, and clinically grounded behavioral dimensions, offering a new foundation for targeted safety improvements.

arXiv:2412.07238v2 Announce Type: replace-cross Abstract: The identity of a speaker influences language comprehension through modulating perception and expectation. This review explores speaker effects and proposes an integrative model of language and speaker processing that integrates distinct mechanistic perspectives. We argue that speaker effects arise from the interplay between bottom-up perception-based processes, driven by acoustic-episodic memory, and top-down expectation-based processes, driven by a speaker model. We show that language and speaker processing are functionally integrated through multi-level probabilistic processing: prior beliefs about a speaker modulate language processing at the phonetic, lexical, and semantic levels, while the unfolding speech and message continuously updates the speaker model, refining broad demographic priors into precise individualized representations. Within this framework, we distinguish between speaker-idiosyncrasy effects arising from familiarity with an individual and speaker-demographics effects arising from social group expectations. We discuss how speaker effects serve as indices for assessing language development and social cognition, and we encourage future research to extend these findings to the emerging domain of artificial intelligence (AI) speakers, as AI agents represent a new class of social interlocutors that are transforming the way we engage in daily communication.

arXiv:2503.05031v2 Announce Type: replace-cross Abstract: Alzheimer's disease (AD) is a major neurodegenerative condition that affects millions around the world. As one of the main biomarkers in the AD diagnosis procedure, brain amyloid positivity is typically identified by positron emission tomography (PET), which is costly and invasive. Brain structural magnetic resonance imaging (sMRI) may provide a safer and more convenient solution for the AD diagnosis. Recent advances in geometric deep learning have facilitated sMRI analysis and early diagnosis of AD. However, determining AD pathology, such as brain amyloid deposition, in preclinical stage remains challenging, as less significant morphological changes can be observed. As a result, few AD classification models are generalizable to the brain amyloid positivity classification task. Blood-based biomarkers (BBBMs), on the other hand, have recently achieved remarkable success in predicting brain amyloid positivity and identifying individuals with high risk of being brain amyloid positive. However, individuals in medium risk group still require gold standard tests such as Amyloid PET for further evaluation. Inspired by the recent success of transformer architectures, we propose a geometric deep learning model based on transformer that is both scalable and robust to variations in input volumetric mesh size. Our work introduced a novel tokenization scheme for tetrahedral meshes, incorporating anatomical landmarks generated by a pre-trained Gaussian process model. Our model achieved superior classification performance in AD classification task. In addition, we showed that the model was also generalizable to the brain amyloid positivity prediction with individuals in the medium risk class, where BM alone cannot achieve a clear classification. Our work may enrich geometric deep learning research and improve AD diagnosis accuracy without using expensive and invasive PET scans.