arXiv:2604.03630v1 Announce Type: new Abstract: Spatial transcriptomics (ST) enables gene expression mapping within anatomical context but remains costly and low-throughput. Hematoxylin and eosin (H\&E) staining offers rich morphology yet lacks molecular resolution. We present \textbf{\ours} (\textbf{S}patial \textbf{T}ranscriptomics and hist\textbf{O}logy \textbf{R}epresentation \textbf{M}odel), a foundation model trained on 1.2 million spatially resolved transcriptomic profiles with matched histology across 18 organs. Using a hierarchical architecture integrating morphological features, gene expression, and spatial context, STORM bridges imaging and omics through robust molecular--morphological representations. STORM enhances spatial domain discovery, producing biologically coherent tissue maps, and outperforms existing methods in predicting spatial gene expression from H\&E images across 11 tumor types. The model is platform-agnostic, performing consistently across Visium, Xenium, Visium HD, and CosMx. Applied to 23 independent cohorts comprising 7,245 patients, STORM significantly improves immunotherapy response prediction and prognostication over established biomarkers, providing a scalable framework for spatially informed discovery and clinical precision medicine.

arXiv:2508.16703v3 Announce Type: replace-cross Abstract: On-device running Large Language Models (LLMs) is nowadays a critical enabler towards preserving user privacy. We observe that the attention operator falls back from the special-purpose NPU to the general-purpose CPU/GPU because of quantization sensitivity in state-of-the-art frameworks. This fallback results in a degraded user experience and increased complexity in system scheduling. To this end, this paper presents shadowAttn, a system-algorithm codesigned sparse attention module with minimal reliance on CPU/GPU by only sparsely calculating the attention on a tiny portion of tokens. The key idea is to hide the overhead of estimating the important tokens with a NPU-based pilot compute. Further, shadowAttn proposes insightful techniques such as NPU compute graph bucketing, head-wise NPU-CPU/GPU pipeline and per-head fine-grained sparsity ratio to achieve high accuracy and efficiency. shadowAttn delivers the best performance with highly limited CPU/GPU resource; it requires much less CPU/GPU resource to deliver on-par performance of SoTA frameworks.