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Received — 2 April 2026 ⏭ cs.AI, q-bio.NC updates on arXiv.org
  • ✇cs.AI, q-bio.NC updates on arXiv.org
  • SimMOF: AI agent for Automated MOF Simulations Jaewoong Lee · Taeun Bae · Jihan Kim
    arXiv:2603.29152v1 Announce Type: new Abstract: Metal-organic frameworks (MOFs) offer a vast design space, and as such, computational simulations play a critical role in predicting their structural and physicochemical properties. However, MOF simulations remain difficult to access because reliable analysis require expert decisions for workflow construction, parameter selection, tool interoperability, and the preparation of computational ready structures. Here, we introduce SimMOF, a large langu
     

SimMOF: AI agent for Automated MOF Simulations

arXiv:2603.29152v1 Announce Type: new Abstract: Metal-organic frameworks (MOFs) offer a vast design space, and as such, computational simulations play a critical role in predicting their structural and physicochemical properties. However, MOF simulations remain difficult to access because reliable analysis require expert decisions for workflow construction, parameter selection, tool interoperability, and the preparation of computational ready structures. Here, we introduce SimMOF, a large language model based multi agent framework that automates end-to-end MOF simulation workflows from natural language queries. SimMOF translates user requests into dependency aware plans, generates runnable inputs, orchestrates multiple agents to execute simulations, and summarizes results with analysis aligned to the user query. Through representative case studies, we show that SimMOF enables adaptive and cognitively autonomous workflows that reflect the iterative and decision driven behavior of human researchers and as such provides a scalable foundation for data driven MOF research.

AI in Work-Based Learning: Understanding the Purposes and Effects of Intelligent Tools Among Student Interns

arXiv:2603.28786v1 Announce Type: cross Abstract: This study examined how student interns in Philippine higher education use intelligent tools during their OJT. Data were collected from 384 respondents using a structured questionnaire that asked about AI tool usage, task-specific applications, and perceptions of confidence, ethics, and support. Analysis of task-based usage identified four main purposes: productivity and report writing, communication and content drafting, technical assistance and code support, and independent task completion. ChatGPT was the most commonly used AI tool, followed by Quillbot, Canva AI, and Grammarly. Students reported moderate confidence in using AI and applied these tools selectively and ethically during OJT tasks. This indicate that AI tools assist student interns in various OJT activities related to work-readiness. The study suggests that higher education programs include AI literacy and onboarding. Clear policies and fair access to AI tools are important to support responsible use and prepare students for future careers.

CIPHER: Counterfeit Image Pattern High-level Examination via Representation

arXiv:2603.29356v1 Announce Type: cross Abstract: The rapid progress of generative adversarial networks (GANs) and diffusion models has enabled the creation of synthetic faces that are increasingly difficult to distinguish from real images. This progress, however, has also amplified the risks of misinformation, fraud, and identity abuse, underscoring the urgent need for detectors that remain robust across diverse generative models. In this work, we introduce Counterfeit Image Pattern High-level Examination via Representation(CIPHER), a deepfake detection framework that systematically reuses and fine-tunes discriminators originally trained for image generation. By extracting scale-adaptive features from ProGAN discriminators and temporal-consistency features from diffusion models, CIPHER captures generation-agnostic artifacts that conventional detectors often overlook. Through extensive experiments across nine state-of-the-art generative models, CIPHER demonstrates superior cross-model detection performance, achieving up to 74.33% F1-score and outperforming existing ViT-based detectors by over 30% in F1-score on average. Notably, our approach maintains robust performance on challenging datasets where baseline methods fail, with up to 88% F1-score on CIFAKE compared to near-zero performance from conventional detectors. These results validate the effectiveness of discriminator reuse and cross-model fine-tuning, establishing CIPHER as a promising approach toward building more generalizable and robust deepfake detection systems in an era of rapidly evolving generative technologies.

NeoNet: An End-to-End 3D MRI-Based Deep Learning Framework for Non-Invasive Prediction of Perineural Invasion via Generation-Driven Classification

arXiv:2603.29449v1 Announce Type: cross Abstract: Minimizing invasive diagnostic procedures to reduce the risk of patient injury and infection is a central goal in medical imaging. And yet, noninvasive diagnosis of perineural invasion (PNI), a critical prognostic factor involving infiltration of tumor cells along the surrounding nerve, still remains challenging, due to the lack of clear and consistent imaging criteria criteria for identifying PNI. To address this challenge, we present NeoNet, an integrated end-to-end 3D deep learning framework for PNI prediction in cholangiocarcinoma that does not rely on predefined image features. NeoNet integrates three modules: (1) NeoSeg, utilizing a Tumor-Localized ROI Crop (TLCR) algorithm; (2) NeoGen, a 3D Latent Diffusion Model (LDM) with ControlNet, conditioned on anatomical masks to generate synthetic image patches, specifically balancing the dataset to a 1:1 ratio; and (3) NeoCls, the final prediction module. For NeoCls, we developed the PNI-Attention Network (PattenNet), which uses the frozen LDM encoder and specialized 3D Dual Attention Blocks (DAB) designed to detect subtle intensity variations and spatial patterns indicative of PNI. In 5-fold cross-validation, NeoNet outperformed baseline 3D models and achieved the highest performance with a maximum AUC of 0.7903.

MedBayes-Lite: Bayesian Uncertainty Quantification for Safe Clinical Decision Support

arXiv:2511.16625v2 Announce Type: replace Abstract: We propose MedBayes-Lite, a lightweight Bayesian enhancement for transformer-based clinical language models that improves reliability through uncertainty-aware prediction. The framework operates without retraining, architectural modification, or additional trainable parameters, and integrates three components: Bayesian Embedding Calibration via Monte Carlo dropout, Uncertainty-Weighted Attention for reliability-aware token aggregation, and Confidence-Guided Decision Shaping for abstention under uncertainty. Across MedQA, PubMedQA, and MIMIC-III, MedBayes-Lite improves calibration and trustworthiness, reducing overconfidence by 32--48\%. In simulated clinical settings, it further supports safer decision-making by flagging uncertain predictions for human review, particularly under distribution shift. For closed API models, the framework remains applicable through sampling-based predictive uncertainty and confidence-guided abstention, while full embedding- and attention-level uncertainty propagation is evaluated on open-weight transformer models.

Let the Agent Steer: Closed-Loop Ranking Optimization via Influence Exchange

arXiv:2603.27765v2 Announce Type: replace Abstract: Recommendation ranking is fundamentally an influence allocation problem: a sorting formula distributes ranking influence among competing factors, and the business outcome depends on finding the optimal "exchange rates" among them. However, offline proxy metrics systematically misjudge how influence reallocation translates to online impact, with asymmetric bias across metrics that a single calibration factor cannot correct. We present Sortify, the first fully autonomous LLM-driven ranking optimization agent deployed in a large-scale production recommendation system. The agent reframes ranking optimization as continuous influence exchange, closing the full loop from diagnosis to parameter deployment without human intervention. It addresses structural problems through three mechanisms: (1) a dual-channel framework grounded in Savage's Subjective Expected Utility (SEU) that decouples offline-online transfer correction (Belief channel) from constraint penalty adjustment (Preference channel); (2) an LLM meta-controller operating on framework-level parameters rather than low-level search variables; (3) a persistent Memory DB with 7 relational tables for cross-round learning. Its core metric, Influence Share, provides a decomposable measure where all factor contributions sum to exactly 100%. Sortify has been deployed across two markets. In Country A, the agent pushed GMV from -3.6% to +9.2% within 7 rounds with peak orders reaching +12.5%. In Country B, a cold-start deployment achieved +4.15% GMV/UU and +3.58% Ads Revenue in a 7-day A/B test, leading to full production rollout.

GenOL: Generating Diverse Examples for Name-only Online Learning

arXiv:2403.10853v4 Announce Type: replace-cross Abstract: Online learning methods often rely on supervised data. However, under data distribution shifts, such as in continual learning (CL), where continuously arriving online data streams incorporate new concepts (e.g., classes), real-time manual annotation is impractical due to its costs and latency, which hinder real-time adaptation. To alleviate this, 'name-only' setup has been proposed, requiring only the name of concepts, not the supervised samples. A recent approach tackles this setup by supplementing data with web-scraped images, but such data often suffers from issues of data imbalance, noise, and copyright. To overcome the limitations of both human supervision and webly supervision, we propose GenOL using generative models for name-only training. But naive application of generative models results in limited diversity of generated data. Here, we enhance (i) intra-diversity, the diversity of images generated by a single model, by proposing a diverse prompt generation method that generates diverse text prompts for text-to-image models, and (ii) inter-diversity, the diversity of images generated by multiple generative models, by introducing an ensemble strategy that selects minimally overlapping samples. We empirically validate that the proposed \frameworkname outperforms prior arts, even a model trained with fully supervised data by large margins, in various tasks, including image recognition and multi-modal visual reasoning.

MA-SAPO: Multi-Agent Reasoning for Score-Aware Prompt Optimization

arXiv:2510.16635v2 Announce Type: replace-cross Abstract: Prompt optimization has become a practical way to improve the performance of Large Language Models (LLMs) without retraining. However, most existing frameworks treat evaluation as a black box, relying solely on outcome scores without explaining why prompts succeed or fail. Moreover, they involve repetitive trial-and-error refinements that remain implicit, offering limited interpretability or actionable guidance for systematic improvement. In this paper, we propose MA-SAPO: a new Multi-Agent Reasoning for Score Aware Prompt Optimization framework that links evaluation outcomes directly to targeted refinements. Specifically, in the Training Phase, multiple agents interpret evaluation scores, diagnose weaknesses, and generate concrete revision directives, which are stored as reusable reasoning assets. In the Test Phase, an analyzer agent retrieves relevant exemplars and assets for a new prompt, and a refiner agent applies evidence-based edits to improve the prompt and its response. By grounding optimization in structured reasoning, MA-SAPO ensures edits are interpretable, auditable, and controllable. Experiments on the HelpSteer1/2 benchmarks show that our framework consistently outperforms single-pass prompting, retrieval-augmented generation, and prior multi-agent methods across multiple evaluation metrics.

EchoMark: Perceptual Acoustic Environment Transfer with Watermark-Embedded Room Impulse Response

arXiv:2511.06458v2 Announce Type: replace-cross Abstract: Acoustic Environment Matching (AEM) is the task of transferring clean audio into a target acoustic environment, enabling engaging applications such as audio dubbing and auditory immersive virtual reality (VR). Recovering similar room impulse response (RIR) directly from reverberant speech offers more accessible and flexible AEM solution. However, this capability also introduces vulnerabilities of arbitrary ``relocation" if misused by malicious user, such as facilitating advanced voice spoofing attacks or undermining the authenticity of recorded evidence. To address this issue, we propose EchoMark, the first deep learning-based AEM framework that generates perceptually similar RIRs with embedded watermark. Our design tackle the challenges posed by variable RIR characteristics, such as different durations and energy decays, by operating in the latent domain. By jointly optimizing the model with a perceptual loss for RIR reconstruction and a loss for watermark detection, EchoMark achieves both high-quality environment transfer and reliable watermark recovery. Experiments on diverse datasets validate that EchoMark achieves room acoustic parameter matching performance comparable to FiNS, the state-of-the-art RIR estimator. Furthermore, a high Mean Opinion Score (MOS) of 4.22 out of 5, watermark detection accuracy exceeding 99\%, and bit error rates (BER) below 0.3\% collectively demonstrate the effectiveness of EchoMark in preserving perceptual quality while ensuring reliable watermark embedding.

Merging Triggers, Breaking Backdoors: Defensive Poisoning for Instruction-Tuned Language Models

arXiv:2601.04448v2 Announce Type: replace-cross Abstract: Large Language Models (LLMs) have greatly advanced Natural Language Processing (NLP), particularly through instruction tuning, which enables broad task generalization without additional fine-tuning. However, their reliance on large-scale datasets-often collected from human or web sources-makes them vulnerable to backdoor attacks, where adversaries poison a small subset of data to implant hidden behaviors. Despite this growing risk, defenses for instruction-tuned models remain underexplored. We propose MB-Defense (Merging & Breaking Defense Framework), a novel training pipeline that immunizes instruction-tuned LLMs against diverse backdoor threats. MB-Defense comprises two stages: (i) Defensive Poisoning, which merges attacker and defensive triggers into a unified backdoor representation, and (ii) Backdoor Neutralization, which breaks this representation through additional training to restore clean behavior. Extensive experiments across multiple LLMs show that MB-Defense substantially lowers attack success rates while preserving instruction-following ability. Our method offers a generalizable and data-efficient defense strategy, improving the robustness of instruction-tuned LLMs against unseen backdoor attacks.
Received — 26 March 2026 ⏭ cs.AI, q-bio.NC updates on arXiv.org

Bridging the Know-Act Gap via Task-Level Autoregressive Reasoning

arXiv:2603.22619v1 Announce Type: new Abstract: LLMs often generate seemingly valid answers to flawed or ill-posed inputs. This is not due to missing knowledge: under discriminative prompting, the same models can mostly identify such issues, yet fail to reflect this in standard generative responses. This reveals a fundamental know-act gap between discriminative recognition and generative behavior. Prior work largely characterizes this issue in narrow settings, such as math word problems or question answering, with limited focus on how to integrate these two modes. In this work, we present a comprehensive analysis using FaultyScience, a newly constructed large-scale, cross-disciplinary benchmark of faulty scientific questions. We show that the gap is pervasive and stems from token-level autoregression, which entangles task selection (validate vs. answer) with content generation, preventing discriminative knowledge from being utilized. To address this, we propose DeIllusionLLM, a task-level autoregressive framework that explicitly models this decision. Through self-distillation, the model unifies discriminative judgment and generative reasoning within a single backbone. Empirically, DeIllusionLLM substantially reduces answer-despite-error failures under natural prompting while maintaining general reasoning performance, demonstrating that self-distillation is an effective and scalable solution for bridging the discriminative-generative know-act gap

Sparsely-Supervised Data Assimilation via Physics-Informed Schr\"odinger Bridge

arXiv:2603.22319v1 Announce Type: cross Abstract: Data assimilation (DA) for systems governed by partial differential equations (PDE) aims to reconstruct full spatiotemporal fields from sparse high-fidelity (HF) observations while respecting physical constraints. While full-grid low-fidelity (LF) simulations provide informative priors in multi-fidelity settings, recovering an HF field consistent with both sparse observations and the governing PDE typically requires per-instance test-time optimization, which becomes a major bottleneck in time-critical applications. To alleviate this, amortized reconstruction using generative models has recently been proposed; however, such approaches rely on full-field HF supervision during training, which is often impractical in real-world settings. From a more realistic perspective, we propose the Physics-Informed Conditional Schr\"odinger Bridge (PICSB), which transports an informative LF prior toward an observation-conditioned HF posterior without any additional inference-time guidance. To enable learning without HF endpoints, PICSB employs an iterative surrogate-endpoint refresh scheme, and directly incorporates PDE residuals into the training objective while enforcing observations via hard conditioning throughout sampling. Experiments on fluid PDE benchmarks demonstrate that PICSB enables extremely fast spatiotemporal field reconstruction while maintaining competitive accuracy under sparse HF supervision.

T-MAP: Red-Teaming LLM Agents with Trajectory-aware Evolutionary Search

arXiv:2603.22341v1 Announce Type: cross Abstract: While prior red-teaming efforts have focused on eliciting harmful text outputs from large language models (LLMs), such approaches fail to capture agent-specific vulnerabilities that emerge through multi-step tool execution, particularly in rapidly growing ecosystems such as the Model Context Protocol (MCP). To address this gap, we propose a trajectory-aware evolutionary search method, T-MAP, which leverages execution trajectories to guide the discovery of adversarial prompts. Our approach enables the automatic generation of attacks that not only bypass safety guardrails but also reliably realize harmful objectives through actual tool interactions. Empirical evaluations across diverse MCP environments demonstrate that T-MAP substantially outperforms baselines in attack realization rate (ARR) and remains effective against frontier models, including GPT-5.2, Gemini-3-Pro, Qwen3.5, and GLM-5, thereby revealing previously underexplored vulnerabilities in autonomous LLM agents.

Rethinking Multimodal Fusion for Time Series: Auxiliary Modalities Need Constrained Fusion

arXiv:2603.22372v1 Announce Type: cross Abstract: Recent advances in multimodal learning have motivated the integration of auxiliary modalities such as text or vision into time series (TS) forecasting. However, most existing methods provide limited gains, often improving performance only in specific datasets or relying on architecture-specific designs that limit generalization. In this paper, we show that multimodal models with naive fusion strategies (e.g., simple addition or concatenation) often underperform unimodal TS models, which we attribute to the uncontrolled integration of auxiliary modalities which may introduce irrelevant information. Motivated by this observation, we explore various constrained fusion methods designed to control such integration and find that they consistently outperform naive fusion methods. Furthermore, we propose Controlled Fusion Adapter (CFA), a simple plug-in method that enables controlled cross-modal interactions without modifying the TS backbone, integrating only relevant textual information aligned with TS dynamics. CFA employs low-rank adapters to filter irrelevant textual information before fusing it into temporal representations. We conduct over 20K experiments across various datasets and TS/text models, demonstrating the effectiveness of the constrained fusion methods including CFA. Code is publicly available at: https://github.com/seunghan96/cfa/.

DALDALL: Data Augmentation for Lexical and Semantic Diverse in Legal Domain by leveraging LLM-Persona

arXiv:2603.22765v1 Announce Type: cross Abstract: Data scarcity remains a persistent challenge in low-resource domains. While existing data augmentation methods leverage the generative capabilities of large language models (LLMs) to produce large volumes of synthetic data, these approaches often prioritize quantity over quality and lack domain-specific strategies. In this work, we introduce DALDALL, a persona-based data augmentation framework tailored for legal information retrieval (IR). Our method employs domain-specific professional personas--such as attorneys, prosecutors, and judges--to generate synthetic queries that exhibit substantially greater lexical and semantic diversity than vanilla prompting approaches. Experiments on the CLERC and COLIEE benchmarks demonstrate that persona-based augmentation achieves improvement in lexical diversity as measured by Self-BLEU scores, while preserving semantic fidelity to the original queries. Furthermore, dense retrievers fine-tuned on persona-augmented data consistently achieve competitive or superior recall performance compared to those trained on original data or generic augmentations. These findings establish persona-based prompting as an effective strategy for generating high-quality training data in specialized, low-resource domains.

Focus, Don't Prune: Identifying Instruction-Relevant Regions for Information-Rich Image Understanding

arXiv:2603.22815v1 Announce Type: cross Abstract: Large Vision-Language Models (LVLMs) have shown strong performance across various multimodal tasks by leveraging the reasoning capabilities of Large Language Models (LLMs). However, processing visually complex and information-rich images, such as infographics or document layouts, requires these models to generate a large number of visual tokens, leading to significant computational overhead. To address this, we propose PinPoint, a novel two-stage framework that first identifies instruction-relevant image regions and then refines them to extract fine-grained visual features for improved reasoning and efficiency. Central to our approach is the Instruction-Region Alignment, which localizes relevant regions using both visual input and textual instructions. We further introduce new annotations that provide richer ground-truth supervision for instruction-relevant regions across challenging VQA benchmarks: InfographicVQA, MultiPageDocVQA, and SinglePageDocVQA. Experimental results show that PinPoint not only achieves superior accuracy compared to existing methods but also reduces computational overhead by minimizing irrelevant visual tokens.

Looking Beyond the Window: Global-Local Aligned CLIP for Training-free Open-Vocabulary Semantic Segmentation

arXiv:2603.23030v1 Announce Type: cross Abstract: A sliding-window inference strategy is commonly adopted in recent training-free open-vocabulary semantic segmentation methods to overcome limitation of the CLIP in processing high-resolution images. However, this approach introduces a new challenge: each window is processed independently, leading to semantic discrepancy across windows. To address this issue, we propose Global-Local Aligned CLIP~(GLA-CLIP), a framework that facilitates comprehensive information exchange across windows. Rather than limiting attention to tokens within individual windows, GLA-CLIP extends key-value tokens to incorporate contextual cues from all windows. Nevertheless, we observe a window bias: outer-window tokens are less likely to be attended, since query features are produced through interactions within the inner window patches, thereby lacking semantic grounding beyond their local context. To mitigate this, we introduce a proxy anchor, constructed by aggregating tokens highly similar to the given query from all windows, which provides a unified semantic reference for measuring similarity across both inner- and outer-window patches. Furthermore, we propose a dynamic normalization scheme that adjusts attention strength according to object scale by dynamically scaling and thresholding the attention map to cope with small-object scenarios. Moreover, GLA-CLIP can be equipped on existing methods and broad their receptive field. Extensive experiments validate the effectiveness of GLA-CLIP in enhancing training-free open-vocabulary semantic segmentation performance. Code is available at https://github.com/2btlFe/GLA-CLIP.

AuthorMix: Modular Authorship Style Transfer via Layer-wise Adapter Mixing

arXiv:2603.23069v1 Announce Type: cross Abstract: The task of authorship style transfer involves rewriting text in the style of a target author while preserving the meaning of the original text. Existing style transfer methods train a single model on large corpora to model all target styles at once: this high-cost approach offers limited flexibility for target-specific adaptation, and often sacrifices meaning preservation for style transfer. In this paper, we propose AuthorMix: a lightweight, modular, and interpretable style transfer framework. We train individual, style-specific LoRA adapters on a small set of high-resource authors, allowing the rapid training of specialized adaptation models for each new target via learned, layer-wise adapter mixing, using only a handful of target style training examples. AuthorMix outperforms existing, SoTA style-transfer baselines -- as well as GPT-5.1 -- for low-resource targets, achieving the highest overall score and substantially improving meaning preservation.

A Multimodal Framework for Human-Multi-Agent Interaction

arXiv:2603.23271v1 Announce Type: cross Abstract: Human-robot interaction is increasingly moving toward multi-robot, socially grounded environments. Existing systems struggle to integrate multimodal perception, embodied expression, and coordinated decision-making in a unified framework. This limits natural and scalable interaction in shared physical spaces. We address this gap by introducing a multimodal framework for human-multi-agent interaction in which each robot operates as an autonomous cognitive agent with integrated multimodal perception and Large Language Model (LLM)-driven planning grounded in embodiment. At the team level, a centralized coordination mechanism regulates turn-taking and agent participation to prevent overlapping speech and conflicting actions. Implemented on two humanoid robots, our framework enables coherent multi-agent interaction through interaction policies that combine speech, gesture, gaze, and locomotion. Representative interaction runs demonstrate coordinated multimodal reasoning across agents and grounded embodied responses. Future work will focus on larger-scale user studies and deeper exploration of socially grounded multi-agent interaction dynamics.

RealCQA-V2: A Diagnostic Benchmark for Structured Visual Entailment over Scientific Charts

arXiv:2410.22492v3 Announce Type: replace Abstract: Multimodal reasoning models often produce fluent answers supported by seemingly coherent rationales. Existing benchmarks evaluate only final-answer correctness. They do not support atomic visual entailment verification of intermediate steps, especially visual compositional logic. This limitation is especially acute in scientific chart understanding, where answers depend on deterministically grounded visual semantics such as axes, legends, and quantitative relations. We introduce RealCQA-V2, a large-scale benchmark that reformulates chart question answering as Visual Premise Proving (VPP): a structured logical entailment task over chart-grounded visual predicates. Each question is deconstructed into manually curated, atomic premises grounded in chart elements (axes, legends, marks, and quantitative relations), yielding executable reasoning chains rather than free-form textual rationales. These premises form compositional reasoning chains, enabling verification at the level of individual visual statements and complete reasoning sequences. We introduce chain-level metrics that measure both full logical validity (AccVPP) and partial reasoning progress within failed chains (DCP), extending beyond traditional VQA accuracy. Baseline evaluations across representative LVLMs reveal a consistent local-global reasoning gap: models often verify many individual premises correctly while failing to preserve coherence across the full chain. RealCQA-V2 establishes a reproducible benchmark for structured visual entailment over real scientific charts and enables rigorous diagnosis of multimodal reasoning beyond answer-only evaluation.
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