arXiv:2604.01344v1 Announce Type: new Abstract: Competency question (CQ) elicitation represents a critical but resource-intensive bottleneck in ontology engineering. This foundational phase is often hampered by the communication gap between domain experts, who possess the necessary knowledge, and ontology engineers, who formalise it. This paper introduces IDEA2, a novel, semi-automated workflow that integrates Large Language Models (LLMs) within a collaborative, expert-in-the-loop process to address this challenge. The methodology is characterised by a core iterative loop: an initial LLM-based extraction of CQs from requirement documents, a co-creational review and feedback phase by domain experts on an accessible collaborative platform, and an iterative, feedback-driven reformulation of rejected CQs by an LLM until consensus is achieved. To ensure transparency and reproducibility, the entire lifecycle of each CQ is tracked using a provenance model that captures the full lineage of edits, anonymised feedback, and generation parameters. The workflow was validated in 2 real-world scenarios (scientific data, cultural heritage), demonstrating that IDEA2 can accelerate the requirements engineering process, improve the acceptance and relevance of the resulting CQs, and exhibit high usability and effectiveness among domain experts. We release all code and experiments at https://github.com/KE-UniLiv/IDEA2

arXiv:2604.01604v1 Announce Type: new Abstract: As safety concerns around large language models (LLMs) grow, understanding the internal mechanisms underlying refusal behavior has become increasingly important. Recent work has studied this behavior by identifying internal features associated with refusal and manipulating them to induce compliance with harmful requests. However, existing refusal feature selection methods rely on how strongly features activate on harmful prompts, which tends to capture superficial signals rather than the causal factors underlying the refusal decision. We propose CRaFT, a circuit-guided refusal feature selection framework that ranks features by their influence on the model's refusal-compliance decision using prompts near the refusal boundary. On Gemma-3-1B-it, CRaFT improves attack success rate (ASR) from 6.7% to 48.2% and outperforms baseline methods across multiple jailbreak benchmarks. These results suggest that circuit influence is a more reliable criterion than activation magnitude for identifying features that causally mediate refusal behavior.

arXiv:2604.01728v1 Announce Type: new Abstract: Achieving semantic interoperability across heterogeneous experimental data systems remains a major barrier to data-driven scientific discovery. The Analytical Information Markup Language (AnIML), a flexible XML-based standard for analytical chemistry and biology, is increasingly used in industrial R&D labs for managing and exchanging experimental data. However, the expressivity of the XML schema permits divergent interpretations across stakeholders, introducing inconsistencies that undermine the interoperability the AnIML schema was designed to support. In this paper, we present the AnIML Ontology, an OWL 2 ontology that formalises the semantics of AnIML and aligns it with the Allotrope Data Format to support future cross-system and cross-lab interoperability. The ontology was developed using an expert-in-the-loop approach combining LLM-assisted requirement elicitation with collaborative ontology engineering. We validate the ontology through a multi-layered approach: data-driven transformation of real-world AnIML files into knowledge graphs, competency question verification via SPARQL, and a novel validation protocol based on adversarial negative competency questions mapped to established ontological anti-patterns and enforced via SHACL constraints.

arXiv:2604.01612v1 Announce Type: cross Abstract: Volumetric CT imaging is essential for clinical diagnosis, yet annotating 3D volumes is expensive and time-consuming, motivating self-supervised learning (SSL) from unlabeled data. However, applying SSL to 3D CT remains challenging due to the high memory cost of full-volume transformers and the anisotropic spatial structure of CT data, which is not well captured by conventional masking strategies. We propose NEMESIS, a masked autoencoder (MAE) framework that operates on local 128x128x128 superpatches, enabling memory-efficient training while preserving anatomical detail. NEMESIS introduces three key components: (i) noise-enhanced reconstruction as a pretext task, (ii) Masked Anatomical Transformer Blocks (MATB) that perform dual-masking through parallel plane-wise and axis-wise token removal, and (iii) NEMESIS Tokens (NT) for cross-scale context aggregation. On the BTCV multi-organ classification benchmark, NEMESIS with a frozen backbone and a linear classifier achieves a mean AUROC of 0.9633, surpassing fully fine-tuned SuPreM (0.9493) and VoCo (0.9387). Under a low-label regime with only 10% of available annotations, it retains an AUROC of 0.9075, demonstrating strong label efficiency. Furthermore, the superpatch-based design reduces computational cost to 31.0 GFLOPs per forward pass, compared to 985.8 GFLOPs for the full-volume baseline, providing a scalable and robust foundation for 3D medical imaging.

arXiv:2604.01845v1 Announce Type: cross Abstract: Multivariate time-series anomaly detection (MTSAD) aims to identify deviations from normality in multivariate time-series and is critical in real-world applications. However, in real-world deployments, distribution shifts are ubiquitous and cause severe performance degradation in pre-trained anomaly detector. Test-time adaptation (TTA) updates a pre-trained model on-the-fly using only unlabeled test data, making it promising for addressing this challenge. In this study, we propose CANDI (Curated test-time adaptation for multivariate time-series ANomaly detection under DIstribution shift), a novel TTA framework that selectively identifies and adapts to potential false positives while preserving pre-trained knowledge. CANDI introduces a False Positive Mining (FPM) strategy to curate adaptation samples based on anomaly scores and latent similarity, and incorporates a plug-and-play Spatiotemporally-Aware Normality Adaptation (SANA) module for structurally informed model updates. Extensive experiments demonstrate that CANDI significantly improves the performance of MTSAD under distribution shift, improving AUROC up to 14% while using fewer adaptation samples.

arXiv:2604.02071v1 Announce Type: cross Abstract: Human-Object Interaction (HOI) detection aims to localize human-object pairs and classify their interactions from a single image, a task that demands strong visual understanding and nuanced contextual reasoning. Recent approaches have leveraged Vision-Language Models (VLMs) to introduce semantic priors, significantly improving HOI detection performance. However, existing methods often fail to fully capitalize on the diverse contextual cues distributed across the entire scene. To overcome these limitations, we propose the Instance-centric Context Mining Network (InCoM-Net)-a novel framework that effectively integrates rich semantic knowledge extracted from VLMs with instance-specific features produced by an object detector. This design enables deeper interaction reasoning by modeling relationships not only within each detected instance but also across instances and their surrounding scene context. InCoM-Net comprises two core components: Instancecentric Context Refinement (ICR), which separately extracts intra-instance, inter-instance, and global contextual cues from VLM-derived features, and Progressive Context Aggregation (ProCA), which iteratively fuses these multicontext features with instance-level detector features to support high-level HOI reasoning. Extensive experiments on the HICO-DET and V-COCO benchmarks show that InCoM-Net achieves state-of-the-art performance, surpassing previous HOI detection methods. Code is available at https://github.com/nowuss/InCoM-Net.

arXiv:2604.02178v1 Announce Type: cross Abstract: Mixture-of-Experts (MoE) architectures have become the dominant choice for scaling Large Language Models (LLMs), activating only a subset of parameters per token. While MoE architectures are primarily adopted for computational efficiency, it remains an open question whether their sparsity makes them inherently easier to interpret than dense feed-forward networks (FFNs). We compare MoE experts and dense FFNs using $k$-sparse probing and find that expert neurons are consistently less polysemantic, with the gap widening as routing becomes sparser. This suggests that sparsity pressures both individual neurons and entire experts toward monosemanticity. Leveraging this finding, we zoom out from the neuron to the expert level as a more effective unit of analysis. We validate this approach by automatically interpreting hundreds of experts. This analysis allows us to resolve the debate on specialization: experts are neither broad domain specialists (e.g., biology) nor simple token-level processors. Instead, they function as fine-grained task experts, specializing in linguistic operations or semantic tasks (e.g., closing brackets in LaTeX). Our findings suggest that MoEs are inherently interpretable at the expert level, providing a clearer path toward large-scale model interpretability. Code is available at: https://github.com/jerryy33/MoE_analysis

arXiv:2604.02194v1 Announce Type: cross Abstract: Retrieval-Augmented Language Models (RALMs) have demonstrated significant potential in knowledge-intensive tasks; however, they remain vulnerable to performance degradation when presented with irrelevant or noisy retrieved contexts. Existing approaches to enhance robustness typically operate via coarse-grained parameter updates at the layer or module level, often overlooking the inherent neuron-level sparsity of Large Language Models (LLMs). To address this limitation, we propose Neuro-RIT (Neuron-guided Robust Instruction Tuning), a novel framework that shifts the paradigm from dense adaptation to precision-driven neuron alignment. Our method explicitly disentangles neurons that are responsible for processing relevant versus irrelevant contexts using attribution-based neuron mining. Subsequently, we introduce a two-stage instruction tuning strategy that enforces a dual capability for noise robustness: achieving direct noise suppression by functionally deactivating neurons exclusive to irrelevant contexts, while simultaneously optimizing targeted layers for evidence distillation. Extensive experiments across diverse QA benchmarks demonstrate that Neuro-RIT consistently outperforms strong baselines and robustness-enhancing methods.

arXiv:2509.17608v2 Announce Type: replace-cross Abstract: Social narratives help autistic children understand and navigate social situations through stories. To ensure effective practice, however, they often require significant time and effort from parents in customizing the narrative materials and delivering repeated instructions on them. We present AutiHero, a generative AI (GenAI)-based social narrative system, which supports parents to create personalized, multi-path stories targeting specific behavior of their autistic children, while enabling them to explore behavioral choices and causal consequences together in reading. A two-week deployment study with 16 autistic child-parent dyads showed that parents actively created, adapted, and read stories with their children, with increased confidence in everyday behavioral guidance. Our work contributes real-world-contextualized text+image content creation approaches harnessing GenAI, ensuring user-aligned application in sensitive contexts involving autistic children and their parents.

arXiv:2601.10611v4 Announce Type: replace-cross Abstract: Today's strongest video-language models (VLMs) remain proprietary. The strongest open-weight models either rely on synthetic data from proprietary VLMs, effectively distilling from them, or do not disclose their training data or recipe. As a result, the open-source community lacks the foundations needed to improve on the state-of-the-art video (and image) language models. Crucially, many downstream applications require more than just high-level video understanding; they require grounding -- either by pointing or by tracking in pixels. Even proprietary models lack this capability. We present Molmo2, a new family of VLMs that are state-of-the-art among open-source models and demonstrate exceptional new capabilities in point-driven grounding in single image, multi-image, and video tasks. Our key contribution is a collection of 7 new video datasets and 2 multi-image datasets, including a dataset of highly detailed video captions for pre-training, a free-form video Q&A dataset for fine-tuning, a new object tracking dataset with complex queries, and an innovative new video pointing dataset, all collected without the use of closed VLMs. We also present a training recipe for this data utilizing an efficient packing and message-tree encoding scheme, and show bi-directional attention on vision tokens and a novel token-weight strategy improves performance. Our best-in-class 8B model outperforms others in the class of open weight and data models on short videos, counting, and captioning, and is competitive on long-videos. On video-grounding Molmo2 significantly outperforms existing open-weight models like Qwen3-VL (35.5 vs 29.6 accuracy on video counting) and surpasses proprietary models like Gemini 3 Pro on some tasks (38.4 vs 20.0 F1 on video pointing and 56.2 vs 41.1 J&F on video tracking).

arXiv:2603.29152v1 Announce Type: new Abstract: Metal-organic frameworks (MOFs) offer a vast design space, and as such, computational simulations play a critical role in predicting their structural and physicochemical properties. However, MOF simulations remain difficult to access because reliable analysis require expert decisions for workflow construction, parameter selection, tool interoperability, and the preparation of computational ready structures. Here, we introduce SimMOF, a large language model based multi agent framework that automates end-to-end MOF simulation workflows from natural language queries. SimMOF translates user requests into dependency aware plans, generates runnable inputs, orchestrates multiple agents to execute simulations, and summarizes results with analysis aligned to the user query. Through representative case studies, we show that SimMOF enables adaptive and cognitively autonomous workflows that reflect the iterative and decision driven behavior of human researchers and as such provides a scalable foundation for data driven MOF research.

arXiv:2603.28786v1 Announce Type: cross Abstract: This study examined how student interns in Philippine higher education use intelligent tools during their OJT. Data were collected from 384 respondents using a structured questionnaire that asked about AI tool usage, task-specific applications, and perceptions of confidence, ethics, and support. Analysis of task-based usage identified four main purposes: productivity and report writing, communication and content drafting, technical assistance and code support, and independent task completion. ChatGPT was the most commonly used AI tool, followed by Quillbot, Canva AI, and Grammarly. Students reported moderate confidence in using AI and applied these tools selectively and ethically during OJT tasks. This indicate that AI tools assist student interns in various OJT activities related to work-readiness. The study suggests that higher education programs include AI literacy and onboarding. Clear policies and fair access to AI tools are important to support responsible use and prepare students for future careers.

arXiv:2603.29356v1 Announce Type: cross Abstract: The rapid progress of generative adversarial networks (GANs) and diffusion models has enabled the creation of synthetic faces that are increasingly difficult to distinguish from real images. This progress, however, has also amplified the risks of misinformation, fraud, and identity abuse, underscoring the urgent need for detectors that remain robust across diverse generative models. In this work, we introduce Counterfeit Image Pattern High-level Examination via Representation(CIPHER), a deepfake detection framework that systematically reuses and fine-tunes discriminators originally trained for image generation. By extracting scale-adaptive features from ProGAN discriminators and temporal-consistency features from diffusion models, CIPHER captures generation-agnostic artifacts that conventional detectors often overlook. Through extensive experiments across nine state-of-the-art generative models, CIPHER demonstrates superior cross-model detection performance, achieving up to 74.33% F1-score and outperforming existing ViT-based detectors by over 30% in F1-score on average. Notably, our approach maintains robust performance on challenging datasets where baseline methods fail, with up to 88% F1-score on CIFAKE compared to near-zero performance from conventional detectors. These results validate the effectiveness of discriminator reuse and cross-model fine-tuning, establishing CIPHER as a promising approach toward building more generalizable and robust deepfake detection systems in an era of rapidly evolving generative technologies.

arXiv:2603.29449v1 Announce Type: cross Abstract: Minimizing invasive diagnostic procedures to reduce the risk of patient injury and infection is a central goal in medical imaging. And yet, noninvasive diagnosis of perineural invasion (PNI), a critical prognostic factor involving infiltration of tumor cells along the surrounding nerve, still remains challenging, due to the lack of clear and consistent imaging criteria criteria for identifying PNI. To address this challenge, we present NeoNet, an integrated end-to-end 3D deep learning framework for PNI prediction in cholangiocarcinoma that does not rely on predefined image features. NeoNet integrates three modules: (1) NeoSeg, utilizing a Tumor-Localized ROI Crop (TLCR) algorithm; (2) NeoGen, a 3D Latent Diffusion Model (LDM) with ControlNet, conditioned on anatomical masks to generate synthetic image patches, specifically balancing the dataset to a 1:1 ratio; and (3) NeoCls, the final prediction module. For NeoCls, we developed the PNI-Attention Network (PattenNet), which uses the frozen LDM encoder and specialized 3D Dual Attention Blocks (DAB) designed to detect subtle intensity variations and spatial patterns indicative of PNI. In 5-fold cross-validation, NeoNet outperformed baseline 3D models and achieved the highest performance with a maximum AUC of 0.7903.

arXiv:2511.16625v2 Announce Type: replace Abstract: We propose MedBayes-Lite, a lightweight Bayesian enhancement for transformer-based clinical language models that improves reliability through uncertainty-aware prediction. The framework operates without retraining, architectural modification, or additional trainable parameters, and integrates three components: Bayesian Embedding Calibration via Monte Carlo dropout, Uncertainty-Weighted Attention for reliability-aware token aggregation, and Confidence-Guided Decision Shaping for abstention under uncertainty. Across MedQA, PubMedQA, and MIMIC-III, MedBayes-Lite improves calibration and trustworthiness, reducing overconfidence by 32--48\%. In simulated clinical settings, it further supports safer decision-making by flagging uncertain predictions for human review, particularly under distribution shift. For closed API models, the framework remains applicable through sampling-based predictive uncertainty and confidence-guided abstention, while full embedding- and attention-level uncertainty propagation is evaluated on open-weight transformer models.

arXiv:2603.27765v2 Announce Type: replace Abstract: Recommendation ranking is fundamentally an influence allocation problem: a sorting formula distributes ranking influence among competing factors, and the business outcome depends on finding the optimal "exchange rates" among them. However, offline proxy metrics systematically misjudge how influence reallocation translates to online impact, with asymmetric bias across metrics that a single calibration factor cannot correct. We present Sortify, the first fully autonomous LLM-driven ranking optimization agent deployed in a large-scale production recommendation system. The agent reframes ranking optimization as continuous influence exchange, closing the full loop from diagnosis to parameter deployment without human intervention. It addresses structural problems through three mechanisms: (1) a dual-channel framework grounded in Savage's Subjective Expected Utility (SEU) that decouples offline-online transfer correction (Belief channel) from constraint penalty adjustment (Preference channel); (2) an LLM meta-controller operating on framework-level parameters rather than low-level search variables; (3) a persistent Memory DB with 7 relational tables for cross-round learning. Its core metric, Influence Share, provides a decomposable measure where all factor contributions sum to exactly 100%. Sortify has been deployed across two markets. In Country A, the agent pushed GMV from -3.6% to +9.2% within 7 rounds with peak orders reaching +12.5%. In Country B, a cold-start deployment achieved +4.15% GMV/UU and +3.58% Ads Revenue in a 7-day A/B test, leading to full production rollout.

arXiv:2403.10853v4 Announce Type: replace-cross Abstract: Online learning methods often rely on supervised data. However, under data distribution shifts, such as in continual learning (CL), where continuously arriving online data streams incorporate new concepts (e.g., classes), real-time manual annotation is impractical due to its costs and latency, which hinder real-time adaptation. To alleviate this, 'name-only' setup has been proposed, requiring only the name of concepts, not the supervised samples. A recent approach tackles this setup by supplementing data with web-scraped images, but such data often suffers from issues of data imbalance, noise, and copyright. To overcome the limitations of both human supervision and webly supervision, we propose GenOL using generative models for name-only training. But naive application of generative models results in limited diversity of generated data. Here, we enhance (i) intra-diversity, the diversity of images generated by a single model, by proposing a diverse prompt generation method that generates diverse text prompts for text-to-image models, and (ii) inter-diversity, the diversity of images generated by multiple generative models, by introducing an ensemble strategy that selects minimally overlapping samples. We empirically validate that the proposed \frameworkname outperforms prior arts, even a model trained with fully supervised data by large margins, in various tasks, including image recognition and multi-modal visual reasoning.

arXiv:2510.16635v2 Announce Type: replace-cross Abstract: Prompt optimization has become a practical way to improve the performance of Large Language Models (LLMs) without retraining. However, most existing frameworks treat evaluation as a black box, relying solely on outcome scores without explaining why prompts succeed or fail. Moreover, they involve repetitive trial-and-error refinements that remain implicit, offering limited interpretability or actionable guidance for systematic improvement. In this paper, we propose MA-SAPO: a new Multi-Agent Reasoning for Score Aware Prompt Optimization framework that links evaluation outcomes directly to targeted refinements. Specifically, in the Training Phase, multiple agents interpret evaluation scores, diagnose weaknesses, and generate concrete revision directives, which are stored as reusable reasoning assets. In the Test Phase, an analyzer agent retrieves relevant exemplars and assets for a new prompt, and a refiner agent applies evidence-based edits to improve the prompt and its response. By grounding optimization in structured reasoning, MA-SAPO ensures edits are interpretable, auditable, and controllable. Experiments on the HelpSteer1/2 benchmarks show that our framework consistently outperforms single-pass prompting, retrieval-augmented generation, and prior multi-agent methods across multiple evaluation metrics.

arXiv:2511.06458v2 Announce Type: replace-cross Abstract: Acoustic Environment Matching (AEM) is the task of transferring clean audio into a target acoustic environment, enabling engaging applications such as audio dubbing and auditory immersive virtual reality (VR). Recovering similar room impulse response (RIR) directly from reverberant speech offers more accessible and flexible AEM solution. However, this capability also introduces vulnerabilities of arbitrary ``relocation" if misused by malicious user, such as facilitating advanced voice spoofing attacks or undermining the authenticity of recorded evidence. To address this issue, we propose EchoMark, the first deep learning-based AEM framework that generates perceptually similar RIRs with embedded watermark. Our design tackle the challenges posed by variable RIR characteristics, such as different durations and energy decays, by operating in the latent domain. By jointly optimizing the model with a perceptual loss for RIR reconstruction and a loss for watermark detection, EchoMark achieves both high-quality environment transfer and reliable watermark recovery. Experiments on diverse datasets validate that EchoMark achieves room acoustic parameter matching performance comparable to FiNS, the state-of-the-art RIR estimator. Furthermore, a high Mean Opinion Score (MOS) of 4.22 out of 5, watermark detection accuracy exceeding 99\%, and bit error rates (BER) below 0.3\% collectively demonstrate the effectiveness of EchoMark in preserving perceptual quality while ensuring reliable watermark embedding.

arXiv:2601.04448v2 Announce Type: replace-cross Abstract: Large Language Models (LLMs) have greatly advanced Natural Language Processing (NLP), particularly through instruction tuning, which enables broad task generalization without additional fine-tuning. However, their reliance on large-scale datasets-often collected from human or web sources-makes them vulnerable to backdoor attacks, where adversaries poison a small subset of data to implant hidden behaviors. Despite this growing risk, defenses for instruction-tuned models remain underexplored. We propose MB-Defense (Merging & Breaking Defense Framework), a novel training pipeline that immunizes instruction-tuned LLMs against diverse backdoor threats. MB-Defense comprises two stages: (i) Defensive Poisoning, which merges attacker and defensive triggers into a unified backdoor representation, and (ii) Backdoor Neutralization, which breaks this representation through additional training to restore clean behavior. Extensive experiments across multiple LLMs show that MB-Defense substantially lowers attack success rates while preserving instruction-following ability. Our method offers a generalizable and data-efficient defense strategy, improving the robustness of instruction-tuned LLMs against unseen backdoor attacks.