Normal view
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Journal of Medical Internet Research
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Quality of Cancer-Related Information on New Media (2014-2023): Systematic Review and Meta-Analysis
Background: New media have become vital sources of cancer-related health information. However, concerns about the quality of that information persist. Objective: This study aims to identify characteristics of studies considering cancer-related information on new media (including social media and artificial intelligence chatbots); analyze patterns in information quality across different platforms, cancer types, and evaluation tools; and synthesize the quality levels of the information. Methods: W
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Omics In Lung
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Cell-free epigenomes enhanced fragmentomics-based model for early detection of lung cancer
Clin Transl Med. 2025 Feb;15(2):e70225. doi: 10.1002/ctm2.70225.ABSTRACTBACKGROUND: Lung cancer is a leading cause of cancer mortality, highlighting the need for innovative non-invasive early detection methods. Although cell-free DNA (cfDNA) analysis shows promise, its sensitivity in early-stage lung cancer patients remains a challenge. This study aimed to integrate insights from epigenetic modifications and fragmentomic features of cfDNA using machine learning to develop a more accurate lung ca
Cell-free epigenomes enhanced fragmentomics-based model for early detection of lung cancer
Clin Transl Med. 2025 Feb;15(2):e70225. doi: 10.1002/ctm2.70225.
ABSTRACT
BACKGROUND: Lung cancer is a leading cause of cancer mortality, highlighting the need for innovative non-invasive early detection methods. Although cell-free DNA (cfDNA) analysis shows promise, its sensitivity in early-stage lung cancer patients remains a challenge. This study aimed to integrate insights from epigenetic modifications and fragmentomic features of cfDNA using machine learning to develop a more accurate lung cancer detection model.
METHODS: To address this issue, a multi-centre prospective cohort study was conducted, with participants harbouring suspicious malignant lung nodules and healthy volunteers recruited from two clinical centres. Plasma cfDNA was analysed for its epigenetic and fragmentomic profiles using chromatin immunoprecipitation sequencing, reduced representation bisulphite sequencing and low-pass whole-genome sequencing. Machine learning algorithms were then employed to integrate the multi-omics data, aiding in the development of a precise lung cancer detection model.
RESULTS: Cancer-related changes in cfDNA fragmentomics were significantly enriched in specific genes marked by cell-free epigenomes. A total of 609 genes were identified, and the corresponding cfDNA fragmentomic features were utilised to construct the ensemble model. This model achieved a sensitivity of 90.4% and a specificity of 83.1%, with an AUC of 0.94 in the independent validation set. Notably, the model demonstrated exceptional sensitivity for stage I lung cancer cases, achieving 95.1%. It also showed remarkable performance in detecting minimally invasive adenocarcinoma, with a sensitivity of 96.2%, highlighting its potential for early detection in clinical settings.
CONCLUSIONS: With feature selection guided by multiple epigenetic sequencing approaches, the cfDNA fragmentomics-based machine learning model demonstrated outstanding performance in the independent validation cohort. These findings highlight its potential as an effective non-invasive strategy for the early detection of lung cancer.
KEYPOINTS: Our study elucidated the regulatory relationships between epigenetic modifications and their effects on fragmentomic features. Identifying epigenetically regulated genes provided a critical foundation for developing the cfDNA fragmentomics-based machine learning model. The model demonstrated exceptional clinical performance, highlighting its substantial potential for translational application in clinical practice.
PMID:39909829 | PMC:PMC11798665 | DOI:10.1002/ctm2.70225
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Oncogene - Issue - nature.com science feeds
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RBM45 reprograms lipid metabolism promoting hepatocellular carcinoma via Rictor and ACSL1/ACSL4
Oncogene, Published online: 01 December 2023; doi:10.1038/s41388-023-02902-4RBM45 reprograms lipid metabolism promoting hepatocellular carcinoma via Rictor and ACSL1/ACSL4
RBM45 reprograms lipid metabolism promoting hepatocellular carcinoma via Rictor and ACSL1/ACSL4
Oncogene, Published online: 01 December 2023; doi:10.1038/s41388-023-02902-4
RBM45 reprograms lipid metabolism promoting hepatocellular carcinoma via Rictor and ACSL1/ACSL4