Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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A Decision-Theoretic Approach for Managing Misalignment
arXiv:2512.15584v1 Announce Type: new Abstract: When should we delegate decisions to AI systems? While the value alignment literature has developed techniques for shaping AI values, less attention has been paid to how to determine, under uncertainty, when imperfect alignment is good enough to justify delegation. We argue that rational delegation requires balancing an agent's value (mis)alignment with its epistemic accuracy and its reach (the acts it has available). This paper introduces a forma
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cs.AI, q-bio.NC updates on arXiv.org
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DrugRAG: Enhancing Pharmacy LLM Performance Through A Novel Retrieval-Augmented Generation Pipeline
arXiv:2512.14896v1 Announce Type: cross Abstract: Objectives: To evaluate large language model (LLM) performance on pharmacy licensure-style question-answering (QA) tasks and develop an external knowledge integration method to improve their accuracy. Methods: We benchmarked eleven existing LLMs with varying parameter sizes (8 billion to 70+ billion) using a 141-question pharmacy dataset. We measured baseline accuracy for each model without modification. We then developed a three-step retrieva
DrugRAG: Enhancing Pharmacy LLM Performance Through A Novel Retrieval-Augmented Generation Pipeline
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cs.AI, q-bio.NC updates on arXiv.org
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MedChat: A Multi-Agent Framework for Multimodal Diagnosis with Large Language Models
arXiv:2506.07400v3 Announce Type: replace-cross Abstract: The integration of deep learning-based glaucoma detection with large language models (LLMs) presents an automated strategy to mitigate ophthalmologist shortages and improve clinical reporting efficiency. However, applying general LLMs to medical imaging remains challenging due to hallucinations, limited interpretability, and insufficient domain-specific medical knowledge, which can potentially reduce clinical accuracy. Although recent ap
MedChat: A Multi-Agent Framework for Multimodal Diagnosis with Large Language Models
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cs.AI, q-bio.NC updates on arXiv.org
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Multimodal Foundation Models for Early Disease Detection
arXiv:2510.01899v2 Announce Type: replace-cross Abstract: Healthcare data now span EHRs, medical imaging, genomics, and wearable sensors, but most diagnostic models still process these modalities in isolation. This limits their ability to capture early, cross-modal disease signatures. This paper introduces a multimodal foundation model built on a transformer architecture that integrates heterogeneous clinical data through modality-specific encoders and cross-modal attention. Each modality is ma
Multimodal Foundation Models for Early Disease Detection
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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A novel statistical feature selection framework for biomarker discovery and cancer classification via multiomics integration
BMC Med Res Methodol. 2025 Dec 17. doi: 10.1186/s12874-025-02713-z. Online ahead of print.ABSTRACTBACKGROUND: Early cancer diagnosis is essential for improving prognosis and guiding treatment. However, the high dimensionality and complexity of omics data present major challenges. Computational approaches that extract stable biomarkers and enable reliable classification across cancer types and stages are needed.METHODS: A novel feature selection method, sDCFE (synergistic Discriminative Cluster-b
A novel statistical feature selection framework for biomarker discovery and cancer classification via multiomics integration
BMC Med Res Methodol. 2025 Dec 17. doi: 10.1186/s12874-025-02713-z. Online ahead of print.
ABSTRACT
BACKGROUND: Early cancer diagnosis is essential for improving prognosis and guiding treatment. However, the high dimensionality and complexity of omics data present major challenges. Computational approaches that extract stable biomarkers and enable reliable classification across cancer types and stages are needed.
METHODS: A novel feature selection method, sDCFE (synergistic Discriminative Cluster-based Feature Extraction), was developed by extending Fisher-like variance analysis with a median absolute deviation (MAD) regularization term and a cluster separation component to enhance robustness and interpretability. Features selected by sDCFE were compared with those obtained from XGBoost, and the intersected set of 82 genes was evaluated through functional enrichment (KEGG, Reactome, GO BP), survival analysis (Kaplan-Meier, Cox regression), and biomarker novelty assessment against six external resources. Hybrid classification models integrating XGBoost, sDCFE, and deep learning were applied to pancancer classification, and the framework was further extended to lung squamous cell carcinoma (LUSC) staging using RNA-seq and methylation data.
RESULTS: The overlap between sDCFE and XGBoost yielded 82 candidate biomarkers enriched in cancer-related pathways, including cell cycle regulation, immune signalling, and DNA repair. Novelty assessment stratified these genes into established, emerging, and novel categories. Six genes-HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP-emerged as the most promising candidates, supported by enrichment and survival associations across multiple cancers. The hybrid model achieved near-perfect pancancer classification on TCGA (accuracy = 99.3%, MCC = 0.992, AUC = 1.0) and demonstrated strong generalizability on PCAWG (accuracy = 94%, MCC = 0.929, AUC = 0.997). In the LUSC staging task, multiomics integration improved classification performance: the CNN-based model reached 84% accuracy, while logistic regression applied to sDCFE-ranked features achieved 88.5% accuracy with superior calibration, highlighting the robustness of the selected features.
CONCLUSION: sDCFE provides a principled extension of Fisher-like methods, enabling stable and interpretable biomarker selection. When combined with XGBoost and deep learning, the framework achieves highly accurate and biologically grounded cancer classification across both cancer types and stages. The identification of novel and prognostic biomarkers, including HFE2, LOC339674, SERINC2, SFTA3, SOX2OT, and ACPP, underscores its translational potential. These results position the framework as a promising precision oncology tool to support early diagnosis, risk stratification, and treatment decision-making.
PMID:41408184 | DOI:10.1186/s12874-025-02713-z
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cs.AI, q-bio.NC updates on arXiv.org
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Enhancing Transparency and Traceability in Healthcare AI: The AI Product Passport
arXiv:2512.13702v1 Announce Type: cross Abstract: Objective: To develop the AI Product Passport, a standards-based framework improving transparency, traceability, and compliance in healthcare AI via lifecycle-based documentation. Materials and Methods: The AI Product Passport was developed within the AI4HF project, focusing on heart failure AI tools. We analyzed regulatory frameworks (EU AI Act, FDA guidelines) and existing standards to design a relational data model capturing metadata across A
Enhancing Transparency and Traceability in Healthcare AI: The AI Product Passport
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cs.AI, q-bio.NC updates on arXiv.org
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Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems
arXiv:2512.13724v1 Announce Type: cross Abstract: Neurological diseases are the leading global cause of disability, yet most lack disease-modifying treatments. We present PROTON, a heterogeneous graph transformer that generates testable hypotheses across molecular, organoid, and clinical systems. To evaluate PROTON, we apply it to Parkinson's disease (PD), bipolar disorder (BD), and Alzheimer's disease (AD). In PD, PROTON linked genetic risk loci to genes essential for dopaminergic neuron survi
Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems
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cs.AI, q-bio.NC updates on arXiv.org
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Criminal Liability in AI-Enabled Autonomous Vehicles: A Comparative Study
arXiv:2512.14330v1 Announce Type: cross Abstract: AI revolutionizes transportation through autonomous vehicles (AVs) but introduces complex criminal liability issues regarding infractions. This study employs a comparative legal analysis of primary statutes, real-world liability claims, and academic literature across the US, Germany, UK, China, and India; jurisdictions selected for their technological advancement and contrasting regulatory approaches. The research examines the attribution of hum
Criminal Liability in AI-Enabled Autonomous Vehicles: A Comparative Study
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cs.AI, q-bio.NC updates on arXiv.org
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A Multicenter Benchmark of Multiple Instance Learning Models for Lymphoma Subtyping from HE-stained Whole Slide Images
arXiv:2512.14640v1 Announce Type: cross Abstract: Timely and accurate lymphoma diagnosis is essential for guiding cancer treatment. Standard diagnostic practice combines hematoxylin and eosin (HE)-stained whole slide images with immunohistochemistry, flow cytometry, and molecular genetic tests to determine lymphoma subtypes, a process requiring costly equipment, skilled personnel, and causing treatment delays. Deep learning methods could assist pathologists by extracting diagnostic information
A Multicenter Benchmark of Multiple Instance Learning Models for Lymphoma Subtyping from HE-stained Whole Slide Images
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cs.AI, q-bio.NC updates on arXiv.org
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COMMA: A Communicative Multimodal Multi-Agent Benchmark
arXiv:2410.07553v5 Announce Type: replace Abstract: The rapid advances of multimodal agents built on large foundation models have largely overlooked their potential for language-based communication between agents in collaborative tasks. This oversight presents a critical gap in understanding their effectiveness in real-world deployments, particularly when communicating with humans. Existing agentic benchmarks fail to address key aspects of inter-agent communication and collaboration, particular
COMMA: A Communicative Multimodal Multi-Agent Benchmark
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cs.AI, q-bio.NC updates on arXiv.org
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A Knowledge Graph-based Retrieval-Augmented Generation Framework for Algorithm Selection in the Facility Layout Problem
arXiv:2509.18054v2 Announce Type: replace-cross Abstract: Selecting a solution algorithm for the Facility Layout Problem (FLP), an NP-hard optimization problem with multiobjective trade-off, is a complex task that requires deep expert knowledge. The performance of a given algorithm depends on the specific characteristics of the problem, such as the number of facilities, objectives, and constraints. This creates a need for a data-driven recommendation method to guide algorithm selection in autom
A Knowledge Graph-based Retrieval-Augmented Generation Framework for Algorithm Selection in the Facility Layout Problem
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cs.AI, q-bio.NC updates on arXiv.org
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Beyond Task Completion: An Assessment Framework for Evaluating Agentic AI Systems
arXiv:2512.12791v2 Announce Type: replace-cross Abstract: Recent advances in agentic AI have shifted the focus from standalone Large Language Models (LLMs) to integrated systems that combine LLMs with tools, memory, and other agents to perform complex tasks. These multi-agent architectures enable coordinated reasoning, planning, and execution across diverse domains, allowing agents to collaboratively automate complex workflows. Despite these advances, evaluation and assessment of LLM agents and
Beyond Task Completion: An Assessment Framework for Evaluating Agentic AI Systems
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Nature - Issue - nature.com science feeds
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Immunological sin: how a person’s earliest flu infections dictate life-long immunity
Nature, Published online: 17 December 2025; doi:10.1038/d41586-025-03606-3Researchers are striving to understand the impact a phenomenon known as original antigenic sin has on immunity to the virus.
Immunological sin: how a person’s earliest flu infections dictate life-long immunity
Nature, Published online: 17 December 2025; doi:10.1038/d41586-025-03606-3
Researchers are striving to understand the impact a phenomenon known as original antigenic sin has on immunity to the virus.-
npj Digital Medicine
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Do we need prequalification of AI as a medical device to drive equitable adoption
npj Digital Medicine, Published online: 17 December 2025; doi:10.1038/s41746-025-02151-7Do we need prequalification of AI as a medical device to drive equitable adoption
Do we need prequalification of AI as a medical device to drive equitable adoption
npj Digital Medicine, Published online: 17 December 2025; doi:10.1038/s41746-025-02151-7
Do we need prequalification of AI as a medical device to drive equitable adoption-
Journal of Medical Internet Research
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Artificial Intelligence Platform Architecture for Hospital Systems: Systematic Review
Background: The construction of artificial intelligence (AI) platforms in hospitals forms the basis of the modern healthcare revolution. While traditional hospital information systems have facilitated digitalization, they are still limited by data siloes, fragmented workflows and insufficient clinical intelligence that impede organizations from realizing the promise of data-led decision-making. Objective: This review aims to provide a strategic roadmap for hospitals to build comprehensive AI pla
Artificial Intelligence Platform Architecture for Hospital Systems: Systematic Review
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Omics In Lung
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Single-cell and spatial transcriptomic characterization of pulmonary pleomorphic carcinoma
Commun Biol. 2025 Dec 16;8(1):1773. doi: 10.1038/s42003-025-09162-w.ABSTRACTPulmonary pleomorphic carcinoma (PPC) is a rare subtype of lung cancer that comprises both epithelial and sarcomatoid components. The molecular basis of PPC, including the cellular dynamics of its components, remains largely unknown. To elucidate potential therapeutic targets for PPC, we perform a multi-omics analysis incorporating digital spatial profiling and single-cell RNA sequencing (scRNA-seq). PPC exhibits diverse
Single-cell and spatial transcriptomic characterization of pulmonary pleomorphic carcinoma
Commun Biol. 2025 Dec 16;8(1):1773. doi: 10.1038/s42003-025-09162-w.
ABSTRACT
Pulmonary pleomorphic carcinoma (PPC) is a rare subtype of lung cancer that comprises both epithelial and sarcomatoid components. The molecular basis of PPC, including the cellular dynamics of its components, remains largely unknown. To elucidate potential therapeutic targets for PPC, we perform a multi-omics analysis incorporating digital spatial profiling and single-cell RNA sequencing (scRNA-seq). PPC exhibits diverse driver gene alterations, including MET exon 14 skipping mutation (METex14) and ALK fusion. In spatial transcriptomics, MET gene and protein are overexpressed exclusively within the epithelial component and not in the sarcomatoid component, even in patients harboring METex14. Epithelial-mesenchymal transition (EMT)-related transcriptional changes, along with extracellular matrix (ECM) remodeling between the epithelial and sarcomatoid components, are observed. scRNA-seq identifies cell populations within the epithelial component that contribute to the malignant transformation and differentiation of the sarcomatoid component. They are characterized by an intermediate EMT state with ECM remodeling signature, suggesting their potential as novel therapeutic targets for PPC.
PMID:41402584 | PMC:PMC12708732 | DOI:10.1038/s42003-025-09162-w
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STAT

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STAT+: Key digital health and device leaders depart FDA
You’re reading the web edition of STAT’s Health Tech newsletter, our guide to how technology is transforming the life sciences. Sign up to get it delivered in your inbox every Tuesday and Thursday. A tumultuous year at the Food and Drug Administration will be capped off at the agency’s devices center with the departure of two key leaders, just as regulators are sorting through challenges related to artificial intelligence and launching new initiatives on software as a medical device regulatio
STAT+: Key digital health and device leaders depart FDA
You’re reading the web edition of STAT’s Health Tech newsletter, our guide to how technology is transforming the life sciences. Sign up to get it delivered in your inbox every Tuesday and Thursday.
A tumultuous year at the Food and Drug Administration will be capped off at the agency’s devices center with the departure of two key leaders, just as regulators are sorting through challenges related to artificial intelligence and launching new initiatives on software as a medical device regulation.
- Sources tell us Jessica Paulsen, a 15-year veteran of FDA and acting deputy director of its Digital Health Center of Excellence is leaving the agency. She’s been leading the center since last summer when the last acting head, SonjaFulmer, left FDA for Mayo Clinic. Fulmer took over for Troy Tazbaz who left in January to return to Oracle. The center’s work includes communicating with industry and developing guidances relevant to digital health. (FDA did not respond to a request for comment.)
- Neuralink, Elon Musk’s frothy brain-computer interface company, poached David McMullen, director of FDA’s office of neurological and physical medicine devices, which is in charge of regulating Neuralink. McMullen spent three years atop the office and previously worked at the National Institute for Mental Health.
- Both Paulsen and McMullen were at the forefront of important conversations about the future of regulation. I grabbed the screenshot above of the two leaders from a video of last month’s Digital Health Advisory Committee meeting on generative AI-enabled mental health devices. Separately, McMullen’s office will have oversight of behavioral health devices under the FDA’s new TEMPO pilot.
- New to me: As part of the funding package that reopened the government last month, lawmakers passed full-year 2026 funding for FDA. Buried within the Senate report accompanying the legislation, lawmakers direct FDA to, within 90 days, (February) report on its authorities to regulate AI medical devices, and within 180 days, (May) report on “the status of the FDA’s efforts regarding engagement on AI in drug development.”
- The Government Accountability Office last week released a report on medical device recalls which found, among other things, that “insufficient staff limit FDA’s ability to conduct oversight activities.” In other words, the FDA already does not have enough staff to oversee medical devices and is losing key leadership at a time when new technology and initiatives may require additional horsepower.
The future of the mammogram
Applying AI to mammograms to help radiologists spot signs of breast cancer is increasingly common but researchers and AI companies want to apply new analyses to the routine screening tests to trigger more proactive care to prevent future cancers, heart attacks, and strokes. In one important breakthrough, the startup Clairity received FDA authorization for AI that offer a prediction of somone’s five-year breast cancer risk based on a mammogram alone.
Continue to STAT+ to read the full story…


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cs.AI, q-bio.NC updates on arXiv.org
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World Models Unlock Optimal Foraging Strategies in Reinforcement Learning Agents
arXiv:2512.12548v1 Announce Type: new Abstract: Patch foraging involves the deliberate and planned process of determining the optimal time to depart from a resource-rich region and investigate potentially more beneficial alternatives. The Marginal Value Theorem (MVT) is frequently used to characterize this process, offering an optimality model for such foraging behaviors. Although this model has been widely used to make predictions in behavioral ecology, discovering the computational mechanisms
World Models Unlock Optimal Foraging Strategies in Reinforcement Learning Agents
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cs.AI, q-bio.NC updates on arXiv.org
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Value-Aware Multiagent Systems
arXiv:2512.12652v1 Announce Type: new Abstract: This paper introduces the concept of value awareness in AI, which goes beyond the traditional value-alignment problem. Our definition of value awareness presents us with a concise and simplified roadmap for engineering value-aware AI. The roadmap is structured around three core pillars: (1) learning and representing human values using formal semantics, (2) ensuring the value alignment of both individual agents and multiagent systems, and (3) provi
Value-Aware Multiagent Systems
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cs.AI, q-bio.NC updates on arXiv.org
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Explainable AI as a Double-Edged Sword in Dermatology: The Impact on Clinicians versus The Public
arXiv:2512.12500v1 Announce Type: cross Abstract: Artificial intelligence (AI) is increasingly permeating healthcare, from physician assistants to consumer applications. Since AI algorithm's opacity challenges human interaction, explainable AI (XAI) addresses this by providing AI decision-making insight, but evidence suggests XAI can paradoxically induce over-reliance or bias. We present results from two large-scale experiments (623 lay people; 153 primary care physicians, PCPs) combining a fai