Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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Multi-agent Self-triage System with Medical Flowcharts
arXiv:2511.12439v2 Announce Type: replace Abstract: Online health resources and large language models (LLMs) are increasingly used as a first point of contact for medical decision-making, yet their reliability in healthcare remains limited by low accuracy, lack of transparency, and susceptibility to unverified information. We introduce a proof-of-concept conversational self-triage system that guides LLMs with 100 clinically validated flowcharts from the American Medical Association, providing a
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npj Digital Medicine
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A novel evaluation benchmark for medical LLMs illuminating safety and effectiveness in clinical domains
npj Digital Medicine, Published online: 26 December 2025; doi:10.1038/s41746-025-02277-8A novel evaluation benchmark for medical LLMs illuminating safety and effectiveness in clinical domains
A novel evaluation benchmark for medical LLMs illuminating safety and effectiveness in clinical domains
npj Digital Medicine, Published online: 26 December 2025; doi:10.1038/s41746-025-02277-8
A novel evaluation benchmark for medical LLMs illuminating safety and effectiveness in clinical domains-
cs.AI, q-bio.NC updates on arXiv.org
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AutoSurvey2: Empowering Researchers with Next Level Automated Literature Surveys
arXiv:2510.26012v3 Announce Type: replace Abstract: The rapid growth of research literature, particularly in large language models (LLMs), has made producing comprehensive and current survey papers increasingly difficult. This paper introduces autosurvey2, a multi-stage pipeline that automates survey generation through retrieval-augmented synthesis and structured evaluation. The system integrates parallel section generation, iterative refinement, and real-time retrieval of recent publications t
AutoSurvey2: Empowering Researchers with Next Level Automated Literature Surveys
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cs.AI, q-bio.NC updates on arXiv.org
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Multi-agent Self-triage System with Medical Flowcharts
arXiv:2511.12439v1 Announce Type: new Abstract: Online health resources and large language models (LLMs) are increasingly used as a first point of contact for medical decision-making, yet their reliability in healthcare remains limited by low accuracy, lack of transparency, and susceptibility to unverified information. We introduce a proof-of-concept conversational self-triage system that guides LLMs with 100 clinically validated flowcharts from the American Medical Association, providing a str
Multi-agent Self-triage System with Medical Flowcharts
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Journal of Medical Internet Research
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Embracing the Future of Medical Education With Large Language Model–Based Virtual Patients: Scoping Review
Background: In recent years, large language models (LLMs) have experienced rapid development. LLM-based virtual patients have begun to gain attention, offering new opportunities for simulations in medical education. Objective: This study aims to systematically analyze the current applications, research trends, and challenges of LLM-based virtual patients in medical education and to explore potential future directions for development. Methods: This study adheres to the PRISMA-ScR (Preferred Repor
Embracing the Future of Medical Education With Large Language Model–Based Virtual Patients: Scoping Review
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cs.AI, q-bio.NC updates on arXiv.org
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MemeArena: Automating Context-Aware Unbiased Evaluation of Harmfulness Understanding for Multimodal Large Language Models
arXiv:2510.27196v1 Announce Type: cross Abstract: The proliferation of memes on social media necessitates the capabilities of multimodal Large Language Models (mLLMs) to effectively understand multimodal harmfulness. Existing evaluation approaches predominantly focus on mLLMs' detection accuracy for binary classification tasks, which often fail to reflect the in-depth interpretive nuance of harmfulness across diverse contexts. In this paper, we propose MemeArena, an agent-based arena-style eval
MemeArena: Automating Context-Aware Unbiased Evaluation of Harmfulness Understanding for Multimodal Large Language Models
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npj Digital Medicine
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Embedded framework for clinical medical image segment anything in resource limited healthcare regions
npj Digital Medicine, Published online: 24 September 2025; doi:10.1038/s41746-025-01881-yEmbedded framework for clinical medical image segment anything in resource limited healthcare regions
Embedded framework for clinical medical image segment anything in resource limited healthcare regions
npj Digital Medicine, Published online: 24 September 2025; doi:10.1038/s41746-025-01881-y
Embedded framework for clinical medical image segment anything in resource limited healthcare regions-
Omics In Lung
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Cell-free epigenomes enhanced fragmentomics-based model for early detection of lung cancer
Clin Transl Med. 2025 Feb;15(2):e70225. doi: 10.1002/ctm2.70225.ABSTRACTBACKGROUND: Lung cancer is a leading cause of cancer mortality, highlighting the need for innovative non-invasive early detection methods. Although cell-free DNA (cfDNA) analysis shows promise, its sensitivity in early-stage lung cancer patients remains a challenge. This study aimed to integrate insights from epigenetic modifications and fragmentomic features of cfDNA using machine learning to develop a more accurate lung ca
Cell-free epigenomes enhanced fragmentomics-based model for early detection of lung cancer
Clin Transl Med. 2025 Feb;15(2):e70225. doi: 10.1002/ctm2.70225.
ABSTRACT
BACKGROUND: Lung cancer is a leading cause of cancer mortality, highlighting the need for innovative non-invasive early detection methods. Although cell-free DNA (cfDNA) analysis shows promise, its sensitivity in early-stage lung cancer patients remains a challenge. This study aimed to integrate insights from epigenetic modifications and fragmentomic features of cfDNA using machine learning to develop a more accurate lung cancer detection model.
METHODS: To address this issue, a multi-centre prospective cohort study was conducted, with participants harbouring suspicious malignant lung nodules and healthy volunteers recruited from two clinical centres. Plasma cfDNA was analysed for its epigenetic and fragmentomic profiles using chromatin immunoprecipitation sequencing, reduced representation bisulphite sequencing and low-pass whole-genome sequencing. Machine learning algorithms were then employed to integrate the multi-omics data, aiding in the development of a precise lung cancer detection model.
RESULTS: Cancer-related changes in cfDNA fragmentomics were significantly enriched in specific genes marked by cell-free epigenomes. A total of 609 genes were identified, and the corresponding cfDNA fragmentomic features were utilised to construct the ensemble model. This model achieved a sensitivity of 90.4% and a specificity of 83.1%, with an AUC of 0.94 in the independent validation set. Notably, the model demonstrated exceptional sensitivity for stage I lung cancer cases, achieving 95.1%. It also showed remarkable performance in detecting minimally invasive adenocarcinoma, with a sensitivity of 96.2%, highlighting its potential for early detection in clinical settings.
CONCLUSIONS: With feature selection guided by multiple epigenetic sequencing approaches, the cfDNA fragmentomics-based machine learning model demonstrated outstanding performance in the independent validation cohort. These findings highlight its potential as an effective non-invasive strategy for the early detection of lung cancer.
KEYPOINTS: Our study elucidated the regulatory relationships between epigenetic modifications and their effects on fragmentomic features. Identifying epigenetically regulated genes provided a critical foundation for developing the cfDNA fragmentomics-based machine learning model. The model demonstrated exceptional clinical performance, highlighting its substantial potential for translational application in clinical practice.
PMID:39909829 | PMC:PMC11798665 | DOI:10.1002/ctm2.70225
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Cell
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High-resolution spatially resolved proteomics of complex tissues based on microfluidics and transfer learning
PLATO, a high-resolution and high-throughput spatial mass spectrometry proteomics platform, identifies distinct tumor subtypes and key dysregulated proteins in human breast cancer.
High-resolution spatially resolved proteomics of complex tissues based on microfluidics and transfer learning
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Omics In Lung
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Investigation of the Molecular Mechanism of Asthma in Meishan Pigs Using Multi-Omics Analysis
Animals (Basel). 2025 Jan 13;15(2):200. doi: 10.3390/ani15020200.ABSTRACTAsthma has been extensively studied in humans and animals, but the molecular mechanisms underlying asthma in Meishan pigs, a breed with distinct genetic and physiological characteristics, remain elusive. Understanding these mechanisms could provide insights into veterinary medicine and human asthma research. We investigated asthma pathogenesis in Meishan pigs through transcriptomic and metabolomic analyses of blood samples
Investigation of the Molecular Mechanism of Asthma in Meishan Pigs Using Multi-Omics Analysis
Animals (Basel). 2025 Jan 13;15(2):200. doi: 10.3390/ani15020200.
ABSTRACT
Asthma has been extensively studied in humans and animals, but the molecular mechanisms underlying asthma in Meishan pigs, a breed with distinct genetic and physiological characteristics, remain elusive. Understanding these mechanisms could provide insights into veterinary medicine and human asthma research. We investigated asthma pathogenesis in Meishan pigs through transcriptomic and metabolomic analyses of blood samples taken during autumn and winter. Asthma in Meishan pigs is related to inflammation, mitochondrial oxidative phosphorylation, and tricarboxylic acid (TCA) cycle disorders. Related genes include CXCL10, CCL8, CCL22, CCL21, OLR1, and ACKR1, while metabolites include succinic acid, riboflavin-5-phosphate, and fumaric acid. Transcriptomic sequencing was performed on panting and normal Meishan pigs, and differentially expressed genes underwent functional enrichment screening. Metabolomic analysis revealed differential metabolites and pathways between groups. Combined analyses indicated that lung inflammation is influenced by genetic, allergenic, and environmental factors disrupting oxidative phosphorylation in lung mitochondria, affecting the TCA cycle. Mitochondrial reactive oxygen species, glutathione S-transferases, arginase 1 and RORC in immune regulation, the Notch pathway, YPEL4 in cell proliferation, and MARCKS in airway mucus secretion play roles in asthma pathogenesis. This study highlights that many cytokines and signaling pathways contribute to asthma. Further studies are needed to elucidate their complex interactions.
PMID:39858200 | PMC:PMC11759154 | DOI:10.3390/ani15020200
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Cell
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Identifying specific functional roles for senescence across cell types
A dual recombinase-mediated genetic system for cell-type-specific lineage tracing, ablation, and gene manipulation of senescent cells reveals distinct roles of senescence across cell types.
Identifying specific functional roles for senescence across cell types
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Nature - Issue - nature.com science feeds
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Tumour vasculature at single-cell resolution
Nature, Published online: 10 July 2024; doi:10.1038/s41586-024-07698-1An atlas of tumour vasculature shows that tumour angiogenesis is initiated from venous endothelial cells and extended towards arterial endothelial cells.
Tumour vasculature at single-cell resolution
Nature, Published online: 10 July 2024; doi:10.1038/s41586-024-07698-1
An atlas of tumour vasculature shows that tumour angiogenesis is initiated from venous endothelial cells and extended towards arterial endothelial cells.-
Cell Death Discovery nature.com science feeds
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Hypoxia-induced epigenetic regulation of miR-485-3p promotes stemness and chemoresistance in pancreatic ductal adenocarcinoma via SLC7A11-mediated ferroptosis
Cell Death Discovery, Published online: 29 May 2024; doi:10.1038/s41420-024-02035-xHypoxia-induced epigenetic regulation of miR-485-3p promotes stemness and chemoresistance in pancreatic ductal adenocarcinoma via SLC7A11-mediated ferroptosis
Hypoxia-induced epigenetic regulation of miR-485-3p promotes stemness and chemoresistance in pancreatic ductal adenocarcinoma via SLC7A11-mediated ferroptosis
Cell Death Discovery, Published online: 29 May 2024; doi:10.1038/s41420-024-02035-x
Hypoxia-induced epigenetic regulation of miR-485-3p promotes stemness and chemoresistance in pancreatic ductal adenocarcinoma via SLC7A11-mediated ferroptosis-
Most Recent Articles: Clinical Epigenetics
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Identification of miR-20b-5p as an inhibitory regulator in cardiac differentiation via TET2 and DNA hydroxymethylation
Congenital heart disease (CHD) is a prevalent congenital cardiac malformation, which lacks effective early biological diagnosis and intervention. MicroRNAs, as epigenetic regulators of cardiac development, pro...
Identification of miR-20b-5p as an inhibitory regulator in cardiac differentiation via TET2 and DNA hydroxymethylation
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Oncogene - Issue - nature.com science feeds
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Hypoxia switches TET1 from being tumor-suppressive to oncogenic
Oncogene, Published online: 05 April 2023; doi:10.1038/s41388-023-02659-wHypoxia switches TET1 from being tumor-suppressive to oncogenic
Hypoxia switches TET1 from being tumor-suppressive to oncogenic
Oncogene, Published online: 05 April 2023; doi:10.1038/s41388-023-02659-w
Hypoxia switches TET1 from being tumor-suppressive to oncogenic