Normal view
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Journal of Medical Internet Research
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Design Guidelines for Online Health Forums: User-Centered Design Approach
Background: Online health forums are used widely, yet evidence of their effectiveness is inconsistent. Evidence-based forum design guidance grounded in theory and lived experience could improve the efficacy and outcomes of these forums for the many people using them worldwide. Objective: This study aimed to draw on the experience of online forum users and staff, and insights from existing research on technology design and self-determination theory, to generate a set of theoretically grounded gui
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Molecular Therapy Nucleic Acids
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Segmented poly(A) tails with microRNA target sites confer tissue-specific regulation for mRNA therapeutics
Zhang and colleagues engineered the poly(A) tail as a programmable regulatory element, showing that embedding cell-type-specific microRNA target sites directly within it confers robust, position-dependent silencing in off-target tissues while preserving activity in target cells. This strategy offers a new modular tool to enhance mRNA therapeutic safety and precision.
Segmented poly(A) tails with microRNA target sites confer tissue-specific regulation for mRNA therapeutics
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Molecular Therapy
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Synchronized latency reversal and immune clearance by a multifunctional fusion protein enables HIV-1 reservoir reduction
Latent HIV reservoirs evade both antiviral therapy and immune surveillance. Luo and colleagues develop a multifunctional fusion protein that couples reservoir reactivation with targeted immune engagement and clearance, offering a coordinated strategy to expose and eliminate persistent HIV-infected cells.
Synchronized latency reversal and immune clearance by a multifunctional fusion protein enables HIV-1 reservoir reduction
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Omics in Hepatocellular
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Elucidating mechanism of Biejia-Ruangan Compound Tablets against alcoholic liver disease through gut-liver axis using integrated multi-omics
Zhongguo Zhong Yao Za Zhi. 2026 Aug;51(15):4401-4409. doi: 10.19540/j.cnki.cjcmm.20260421.801.ABSTRACTBased on the gut-liver axis, this study integrated multi-omics and network pharmacology strategies to explore the mechanism of Biejia-Ruangan Compound Tablets(BRC), a preferred Chinese patent medicine for anti-hepatic fibrosis, in alleviating alcoholic liver disease(ALD). The Lieber-DeCarli ethanol liquid diet was used to establish the ALD model, and the pharmacodynamic effects of BRC were evalu
Elucidating mechanism of Biejia-Ruangan Compound Tablets against alcoholic liver disease through gut-liver axis using integrated multi-omics
Zhongguo Zhong Yao Za Zhi. 2026 Aug;51(15):4401-4409. doi: 10.19540/j.cnki.cjcmm.20260421.801.
ABSTRACT
Based on the gut-liver axis, this study integrated multi-omics and network pharmacology strategies to explore the mechanism of Biejia-Ruangan Compound Tablets(BRC), a preferred Chinese patent medicine for anti-hepatic fibrosis, in alleviating alcoholic liver disease(ALD). The Lieber-DeCarli ethanol liquid diet was used to establish the ALD model, and the pharmacodynamic effects of BRC were evaluated. Non-targeted metabolomics and network pharmacology were employed to screen key metabolites and pathways, while multiple technical methods such as immunohistochemistry were used to verify key molecules in the gut-liver axis. The results showed that BRC significantly improved liver morphology and pathological damage in mice, reduced organ indices, and decreased serum levels of aspartate aminotransferase(AST) and alanine aminotransferase(ALT). BRC also alleviated hepatocellular steatosis, inflammatory infiltration, and fibrosis, and reduced the levels of reactive oxygen species(ROS) and partially restored superoxide dismutase(SOD) activity. Metabolomic analysis indicated that BRC could significantly reverse the disordered metabolic profiles of the intestine and liver, and increase the level of the differential metabolite prostaglandin E_2(PGE_2), which may be closely related to the adenosine 5'-monophosphate(AMP)-activated protein kinase(AMPK) signaling pathway. Compared with the model group, BRC effectively upregulated the expression of prostaglandin G/H synthase-2(COX-2) in the small intestine, inhibited the levels of inflammatory factors such as lipopolysaccharide(LPS), tumor necrosis factor-α(TNF-α), and interleukin-1β(IL-1β) in the liver, and promoted the expression of phosphorylated AMP-activated protein kinase catalytic subunit α2(p-AMPKα2), forkhead box protein O1(FOXO1), and peroxisome proliferator-activated receptor gamma coactivator-1α(PGC-1α) in the liver, as well as the activity of cytoplasmic phosphoenolpyruvate carboxykinase 1(PCK1). In conclusion, BRC may alleviate ALD by alleviating hepatic inflammation, oxidative stress, and metabolic disorders through the gut-liver axis via the COX-2/AMPK/FOXO1/PGC-1α/PCK1 signaling pathway. This study provides a scientific basis and new insights for the clinical application of BRC and the prevention and treatment of ALD with TCM.
PMID:42693054 | DOI:10.19540/j.cnki.cjcmm.20260421.801
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Nature - Issue - nature.com science feeds
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High-fidelity identification of guest species in porous materials
Nature, Published online: 20 May 2026; doi:10.1038/s41586-026-10527-2A reconstruction method based on Gaussian-apodized single-sideband electron ptychography removes artefacts to enable the high-fidelity identification of guest species in porous materials.
High-fidelity identification of guest species in porous materials
Nature, Published online: 20 May 2026; doi:10.1038/s41586-026-10527-2
A reconstruction method based on Gaussian-apodized single-sideband electron ptychography removes artefacts to enable the high-fidelity identification of guest species in porous materials.-
(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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Nonsense-mediated mRNA decay inhibition reshapes the cancer immunopeptidome
Immunity. 2026 Apr 8:S1074-7613(26)00075-0. doi: 10.1016/j.immuni.2026.02.005. Online ahead of print.ABSTRACTDNA mutations are a well-characterized source of neoepitopes in immunotherapy. Here, we examined the contribution of dysregulated RNA processing to neoantigen production. Leveraging multi-omics and checkpoint inhibitor (CPI) response data from >1,000 patients, we identified reduced activity of the nonsense-mediated mRNA decay (NMD) pathway kinase SMG1 as a predictor of improved CPI res
Nonsense-mediated mRNA decay inhibition reshapes the cancer immunopeptidome
Immunity. 2026 Apr 8:S1074-7613(26)00075-0. doi: 10.1016/j.immuni.2026.02.005. Online ahead of print.
ABSTRACT
DNA mutations are a well-characterized source of neoepitopes in immunotherapy. Here, we examined the contribution of dysregulated RNA processing to neoantigen production. Leveraging multi-omics and checkpoint inhibitor (CPI) response data from >1,000 patients, we identified reduced activity of the nonsense-mediated mRNA decay (NMD) pathway kinase SMG1 as a predictor of improved CPI response. NMD inhibition through SMG1 targeting stabilized transcripts containing premature termination codons, most of which were of non-mutational origin. This reshaped the major histocompatibility complex class I (MHC class I)-bound immunopeptidome and increased neoantigen abundance to levels comparable to high mutation burden tumors. Functionally, NMD inhibition drove antigen-dependent T cell-mediated tumor cell killing in vitro, promoted activation of tissue-resident T cells in patient-derived models ex vivo, and improved CPI efficacy in vivo. Our findings establish NMD inhibition as a strategy to harness a previously inaccessible source of canonical and non-canonical neoantigens, with the potential to increase tumor immunogenicity across cancers.
PMID:41956098 | DOI:10.1016/j.immuni.2026.02.005
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cs.AI, q-bio.NC updates on arXiv.org
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Individual and Combined Effects of English as a Second Language and Typos on LLM Performance
arXiv:2604.04723v1 Announce Type: cross Abstract: Large language models (LLMs) are used globally, and because much of their training data is in English, they typically perform best on English inputs. As a result, many non-native English speakers interact with them in English as a second language (ESL), and these inputs often contain typographical errors. Prior work has largely studied the effects of ESL variation and typographical errors separately, even though they often co-occur in real-world
Individual and Combined Effects of English as a Second Language and Typos on LLM Performance
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Nature - Issue - nature.com science feeds
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Genomic history of early dogs in Europe
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10112-7Genome-wide analysis shows European dogs existed by 14,200 years ago, were already genetically distinct, received less Neolithic Southwest Asian admixture than humans did and contributed substantially to later European dogs.
Genomic history of early dogs in Europe
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10112-7
Genome-wide analysis shows European dogs existed by 14,200 years ago, were already genetically distinct, received less Neolithic Southwest Asian admixture than humans did and contributed substantially to later European dogs.-
Nature - Issue - nature.com science feeds
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Dogs were widely distributed across western Eurasia during the Palaeolithic
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10170-xAnalysis of nuclear and mitochondrial genomes from archaeological canid remains found across Europe and Anatolia shows that a genetically homogeneous dog population was already widely distributed across the region by 15,000 years ago.
Dogs were widely distributed across western Eurasia during the Palaeolithic
Nature, Published online: 25 March 2026; doi:10.1038/s41586-026-10170-x
Analysis of nuclear and mitochondrial genomes from archaeological canid remains found across Europe and Anatolia shows that a genetically homogeneous dog population was already widely distributed across the region by 15,000 years ago.-
Pulmonary nodule
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A Review of the Role of Zeqi Decoction in the Treatment of Non-Small Cell Lung Cancer
J Multidiscip Healthc. 2026 Mar 11;19:584071. doi: 10.2147/JMDH.S584071. eCollection 2026.ABSTRACTNon-small cell lung cancer (NSCLC) is one of the malignant tumors with the highest incidence and mortality rates. Zeqi Decoction has the functions of "promoting diuresis and reducing swelling, resolving phlegm and dispersing nodules", embodying the unique approach of traditional Chinese medicine in treating lung cancer by "strengthening the body's resistance and eliminating pathogenic factors". Mode
A Review of the Role of Zeqi Decoction in the Treatment of Non-Small Cell Lung Cancer
J Multidiscip Healthc. 2026 Mar 11;19:584071. doi: 10.2147/JMDH.S584071. eCollection 2026.
ABSTRACT
Non-small cell lung cancer (NSCLC) is one of the malignant tumors with the highest incidence and mortality rates. Zeqi Decoction has the functions of "promoting diuresis and reducing swelling, resolving phlegm and dispersing nodules", embodying the unique approach of traditional Chinese medicine in treating lung cancer by "strengthening the body's resistance and eliminating pathogenic factors". Modern research shows that Zeqi Decoction exerts anti-NSCLC effects through multiple pathways and targets. In terms of the material basis of its efficacy, its active ingredients (such as diterpene esters and flavonoids contained in Zeqi) have the ability to directly inhibit the proliferation, invasion and migration of tumor cells and induce apoptosis. In terms of the mechanism of action, basic experiments have revealed that Zeqi Decoction can down-regulate the S100A9/STAT3 signaling pathway, inhibit the immunosuppressive activity of myelium-derived suppressor cells (MDSCs), reshape the tumor microenvironment, thereby enhancing the cytotoxic function of CD8⁺T cells, and can also regulate the EGFR/PI3K/Akt pathway to affect PD-L1 expression. Intervene in tumor immune escape; In terms of clinical transformation, the combination of Zexi Decoction with chemotherapy and targeted therapy can improve patients' symptoms such as cough and pleural effusion, prolong progression-free survival, and alleviate the toxic and side effects of Western medical treatment. In addition, Zexi Decoction also shows potential value in reversing drug resistance such as gemcitabine. At present, there are still problems such as the lack of standardized protocols and unclear molecular mechanisms in the research. In the future, it is necessary to combine new technologies such as network pharmacology and multi-omics analysis to deepen the research on the pharmacological material basis, dose-effect relationship and evidence-based medicine of Zeqi Decoction, so as to promote the clinical application and transformation of the combination of traditional Chinese and Western medicine in the treatment of NSCLC.
PMID:41847115 | PMC:PMC12991379 | DOI:10.2147/JMDH.S584071
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cs.AI, q-bio.NC updates on arXiv.org
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R1-Code-Interpreter: LLMs Reason with Code via Supervised and Multi-stage Reinforcement Learning
arXiv:2505.21668v3 Announce Type: replace Abstract: Practical guidance on training Large Language Models (LLMs) to leverage Code Interpreter across diverse tasks remains lacking. We present R1-Code-Interpreter, an extension of a text-only LLM trained via multi-turn supervised fine-tuning (SFT) and reinforcement learning (RL) to autonomously generate multiple code queries during step-by-step reasoning. Unlike prior RL + tool-use efforts focused on narrow domains such as math or retrieval, we cur
R1-Code-Interpreter: LLMs Reason with Code via Supervised and Multi-stage Reinforcement Learning
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cs.AI, q-bio.NC updates on arXiv.org
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Closing the Gap Between Text and Speech Understanding in LLMs
arXiv:2510.13632v2 Announce Type: replace-cross Abstract: Large Language Models (LLMs) can be adapted to extend their text capabilities to speech inputs. However, these speech-adapted LLMs consistently underperform their text-based counterparts--and even cascaded pipelines--on language understanding tasks. We term this shortfall the text-speech understanding gap: the performance drop observed when a speech-adapted LLM processes spoken inputs relative to when the original text-based LLM processe
Closing the Gap Between Text and Speech Understanding in LLMs
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cs.AI, q-bio.NC updates on arXiv.org
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EBPO: Empirical Bayes Shrinkage for Stabilizing Group-Relative Policy Optimization
arXiv:2602.05165v3 Announce Type: replace-cross Abstract: Reinforcement Learning with Verifiable Rewards (RLVR) has proven effective for enhancing the reasoning capabilities of Large Language Models (LLMs). However, dominant approaches like Group Relative Policy Optimization (GRPO) face critical stability challenges: they suffer from high estimator variance under computational constraints (small group sizes) and vanishing gradient signals in saturated failure regimes where all responses yield i
EBPO: Empirical Bayes Shrinkage for Stabilizing Group-Relative Policy Optimization
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cs.AI, q-bio.NC updates on arXiv.org
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What Do We Mean by 'Pilot Study': Early Findings from a Meta-Review of Pilot Study Reporting at CHI
arXiv:2602.13488v1 Announce Type: cross Abstract: Pilot studies (PS) are ubiquitous in HCI research. CHI papers routinely reference 'pilot studies', 'pilot tests', or 'preliminary studies' to justify design decisions, verify procedures, or motivate methodological choices. Yet despite their frequency, the role of pilot studies in HCI remains conceptually vague and empirically underexamined. Unlike fields such as medicine, nursing, and education, where pilot and feasibility studies have well-esta