Normal view
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cs.AI, q-bio.NC updates on arXiv.org
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A Rational Account of Categorization Based on Information Theory
arXiv:2603.29895v1 Announce Type: new Abstract: We present a new theory of categorization based on an information-theoretic rational analysis. To evaluate this theory, we investigate how well it can account for key findings from classic categorization experiments conducted by Hayes-Roth and Hayes-Roth (1977), Medin and Schaffer (1978), and Smith and Minda (1998). We find that it explains the human categorization behavior at least as well (or better) than the independent cue and context models (
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Nature Biotechnology - Issue - nature.com science feeds
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Mirror-enhanced 4Pi-SMLM with one objective enables isotropic nanoscale imaging
Nature Biotechnology, Published online: 31 March 2026; doi:10.1038/s41587-026-03083-7Single-molecule 4Pi microscopy is simplified and made accessible by using a single objective.
Mirror-enhanced 4Pi-SMLM with one objective enables isotropic nanoscale imaging
Nature Biotechnology, Published online: 31 March 2026; doi:10.1038/s41587-026-03083-7
Single-molecule 4Pi microscopy is simplified and made accessible by using a single objective.-
Omics In Lung
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A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients
EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.ABSTRACTLung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patie
A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients
EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.
ABSTRACT
Lung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patients responding to IC exhibited significantly higher baseline levels of peripheral blood monocytes, tumor-infiltrating classical monocytes, and APOBEC3A+ monocytes across both compartments compared with non-responders. These associations were independently validated in additional cohorts using routine complete blood count testing and multiplex immunofluorescence analysis of native tumor tissues. Our findings reveal monocyte-related parameters as clinically accessible indicators that link systemic immunity with the tumor microenvironment and hold promise for predicting IC responsiveness in patients with LUSC.
PMID:41912871 | DOI:10.1038/s44321-026-00410-y
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(Multiomics OR Omics) AND (Lung OR gastric OR Hepatocellular)
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A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients
EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.ABSTRACTLung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patie
A monocyte-centered framework for predicting immunochemotherapy efficacy in lung squamous cell carcinoma patients
EMBO Mol Med. 2026 Mar 30. doi: 10.1038/s44321-026-00410-y. Online ahead of print.
ABSTRACT
Lung cancer is the leading cause of cancer-related mortality worldwide, with lung squamous cell carcinoma (LUSC) comprising 20-30% of cases. Immunochemotherapy (IC) is the standard first-line treatment for advanced LUSC, yet reliable predictors of therapeutic response remain unavailable. Using single-cell multi-omics profiling of paired pre- and post-treatment tumor and blood samples, we observed that patients responding to IC exhibited significantly higher baseline levels of peripheral blood monocytes, tumor-infiltrating classical monocytes, and APOBEC3A+ monocytes across both compartments compared with non-responders. These associations were independently validated in additional cohorts using routine complete blood count testing and multiplex immunofluorescence analysis of native tumor tissues. Our findings reveal monocyte-related parameters as clinically accessible indicators that link systemic immunity with the tumor microenvironment and hold promise for predicting IC responsiveness in patients with LUSC.
PMID:41912871 | DOI:10.1038/s44321-026-00410-y
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cs.AI, q-bio.NC updates on arXiv.org
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From Static Templates to Dynamic Runtime Graphs: A Survey of Workflow Optimization for LLM Agents
arXiv:2603.22386v1 Announce Type: new Abstract: Large language model (LLM)-based systems are becoming increasingly popular for solving tasks by constructing executable workflows that interleave LLM calls, information retrieval, tool use, code execution, memory updates, and verification. This survey reviews recent methods for designing and optimizing such workflows, which we treat as agentic computation graphs (ACGs). We organize the literature based on when workflow structure is determined, whe
From Static Templates to Dynamic Runtime Graphs: A Survey of Workflow Optimization for LLM Agents
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cs.AI, q-bio.NC updates on arXiv.org
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MedCausalX: Adaptive Causal Reasoning with Self-Reflection for Trustworthy Medical Vision-Language Models
arXiv:2603.23085v1 Announce Type: new Abstract: Vision-Language Models (VLMs) have enabled interpretable medical diagnosis by integrating visual perception with linguistic reasoning. Yet, existing medical chain-of-thought (CoT) models lack explicit mechanisms to represent and enforce causal reasoning, leaving them vulnerable to spurious correlations and limiting their clinical reliability. We pinpoint three core challenges in medical CoT reasoning: how to adaptively trigger causal correction, c
MedCausalX: Adaptive Causal Reasoning with Self-Reflection for Trustworthy Medical Vision-Language Models
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cs.AI, q-bio.NC updates on arXiv.org
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MetaKE: Meta-learning Aligned Knowledge Editing via Bi-level Optimization
arXiv:2603.12677v1 Announce Type: cross Abstract: Knowledge editing (KE) aims to precisely rectify specific knowledge in Large Language Models (LLMs) without disrupting general capabilities. State-of-the-art methods suffer from an open-loop control mismatch. We identify a critical "Semantic-Execution Disconnect": the semantic target is derived independently without feedback from the downstream's feasible region. This misalignment often causes valid semantic targets to fall within the prohibited
MetaKE: Meta-learning Aligned Knowledge Editing via Bi-level Optimization
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Nature - Issue - nature.com science feeds
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Insulin resistance prediction from wearables and routine blood biomarkers
Nature, Published online: 16 March 2026; doi:10.1038/s41586-026-10179-2A machine-learning model that integrates data from wearable devices (such as smartwatches) with blood biomarkers and demographic data can predict whether someone has insulin resistance, enabling timely lifestyle interventions to prevent progression to type 2 diabetes.
Insulin resistance prediction from wearables and routine blood biomarkers
Nature, Published online: 16 March 2026; doi:10.1038/s41586-026-10179-2
A machine-learning model that integrates data from wearable devices (such as smartwatches) with blood biomarkers and demographic data can predict whether someone has insulin resistance, enabling timely lifestyle interventions to prevent progression to type 2 diabetes.-
cs.AI, q-bio.NC updates on arXiv.org
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Property-driven Protein Inverse Folding With Multi-Objective Preference Alignment
arXiv:2603.06748v1 Announce Type: cross Abstract: Protein sequence design must balance designability, defined as the ability to recover a target backbone, with multiple, often competing, developability properties such as solubility, thermostability, and expression. Existing approaches address these properties through post hoc mutation, inference-time biasing, or retraining on property-specific subsets, yet they are target dependent and demand substantial domain expertise or careful hyperparamet
Property-driven Protein Inverse Folding With Multi-Objective Preference Alignment
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cs.AI, q-bio.NC updates on arXiv.org
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Real-Time Aligned Reward Model beyond Semantics
arXiv:2601.22664v3 Announce Type: replace Abstract: Reinforcement Learning from Human Feedback (RLHF) is a pivotal technique for aligning large language models (LLMs) with human preferences, yet it is susceptible to reward overoptimization, in which policy models overfit to the reward model, exploit spurious reward patterns instead of faithfully capturing human intent. Prior mitigations primarily relies on surface semantic information and fails to efficiently address the misalignment between th
Real-Time Aligned Reward Model beyond Semantics
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cs.AI, q-bio.NC updates on arXiv.org
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How Well Do Multimodal Models Reason on ECG Signals?
arXiv:2603.00312v2 Announce Type: replace Abstract: While multimodal large language models offer a promising solution to the "black box" nature of health AI by generating interpretable reasoning traces, verifying the validity of these traces remains a critical challenge. Existing evaluation methods are either unscalable, relying on manual clinician review, or superficial, utilizing proxy metrics (e.g. QA) that fail to capture the semantic correctness of clinical logic. In this work, we introduc
How Well Do Multimodal Models Reason on ECG Signals?
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cs.AI, q-bio.NC updates on arXiv.org
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Adaptive Batch-Wise Sample Scheduling for Direct Preference Optimization
arXiv:2506.17252v4 Announce Type: replace-cross Abstract: Direct Preference Optimization (DPO) has emerged as an effective approach for aligning large language models (LLMs) with human preferences. However, its performance is highly dependent on the quality of the underlying human preference data. To address this bottleneck, prior work has explored various data selection strategies, but these methods often overlook the impact of the evolving states of the language model during the optimization
Adaptive Batch-Wise Sample Scheduling for Direct Preference Optimization
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cs.AI, q-bio.NC updates on arXiv.org
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Metric-Topology Factorization: A Computational Framework for Hippocampal-Neocortical Intelligence
arXiv:2603.03362v1 Announce Type: new Abstract: The brain achieves stability and plasticity in a topologically complex, shifting world through Metric-Topology Factorization (MTF), separating discrete topological indexing for context selection from continuous metric condensation for local inference. Semantically rich environments defy single globally contractive geometries, causing obstructions under shifts, so intelligence factorizes these: the hippocampus provides sparse signatures indexing ma
Metric-Topology Factorization: A Computational Framework for Hippocampal-Neocortical Intelligence
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cs.AI, q-bio.NC updates on arXiv.org
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Monitoring AI-Modified Content at Scale: A Case Study on the Impact of ChatGPT on AI Conference Peer Reviews
arXiv:2403.07183v3 Announce Type: replace-cross Abstract: We present an approach for estimating the fraction of text in a large corpus which is likely to be substantially modified or produced by a large language model (LLM). Our maximum likelihood model leverages expert-written and AI-generated reference texts to accurately and efficiently examine real-world LLM-use at the corpus level. We apply this approach to a case study of scientific peer review in AI conferences that took place after the
Monitoring AI-Modified Content at Scale: A Case Study on the Impact of ChatGPT on AI Conference Peer Reviews
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cs.AI, q-bio.NC updates on arXiv.org
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DiaBlo: Diagonal Blocks Are Sufficient For Finetuning
arXiv:2506.03230v2 Announce Type: replace-cross Abstract: Fine-tuning is a critical step for adapting large language models (LLMs) to domain-specific downstream tasks. To mitigate the substantial computational and memory costs of full-model fine-tuning, Parameter-Efficient Fine-Tuning (PEFT) methods have been proposed to update only a small subset of model parameters. However, performance gaps between PEFT approaches and full-model fine-tuning still exist. In this work, we present DiaBlo, a sim
DiaBlo: Diagonal Blocks Are Sufficient For Finetuning
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cs.AI, q-bio.NC updates on arXiv.org
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xLLM Technical Report
arXiv:2510.14686v2 Announce Type: replace-cross Abstract: We introduce xLLM, an intelligent and efficient Large Language Model (LLM) inference framework designed for high-performance, large-scale enterprise-grade serving, with deep optimizations for diverse AI accelerators. To address these challenges, xLLM builds a novel decoupled service-engine architecture. At the service layer, xLLM-Service features an intelligent scheduling module that efficiently processes multimodal requests and co-locat
xLLM Technical Report
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cs.AI, q-bio.NC updates on arXiv.org
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IDER: IDempotent Experience Replay for Reliable Continual Learning
arXiv:2603.00624v2 Announce Type: replace-cross Abstract: Catastrophic forgetting, the tendency of neural networks to forget previously learned knowledge when learning new tasks, has been a major challenge in continual learning (CL). To tackle this challenge, CL methods have been proposed and shown to reduce forgetting. Furthermore, CL models deployed in mission-critical settings can benefit from uncertainty awareness by calibrating their predictions to reliably assess their confidences. Howeve
IDER: IDempotent Experience Replay for Reliable Continual Learning
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cs.AI, q-bio.NC updates on arXiv.org
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AgentCAT: An LLM Agent for Extracting and Analyzing Catalytic Reaction Data from Chemical Engineering Literature
arXiv:2602.18479v1 Announce Type: cross Abstract: This paper presents a large language model (LLM) agent named AgentCAT, which extracts and analyzes catalytic reaction data from chemical engineering papers, %and supports natural language based interactive analysis of the extracted data. AgentCAT serves as an alternative to overcome the long-standing data bottleneck in chemical engineering field, and its natural language based interactive data analysis functionality is friendly to the community.
AgentCAT: An LLM Agent for Extracting and Analyzing Catalytic Reaction Data from Chemical Engineering Literature
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cs.AI, q-bio.NC updates on arXiv.org
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Continuous Telemonitoring of Heart Failure using Personalised Speech Dynamics
arXiv:2602.19674v1 Announce Type: cross Abstract: Remote monitoring of heart failure (HF) via speech signals provides a non-invasive and cost-effective solution for long-term patient management. However, substantial inter-individual heterogeneity in vocal characteristics often limits the accuracy of traditional cross-sectional classification models. To address this, we propose a Longitudinal Intra-Patient Tracking (LIPT) scheme designed to capture the trajectory of relative symptomatic changes
Continuous Telemonitoring of Heart Failure using Personalised Speech Dynamics
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cs.AI, q-bio.NC updates on arXiv.org
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Does Your Reasoning Model Implicitly Know When to Stop Thinking?
arXiv:2602.08354v2 Announce Type: replace Abstract: Recent advancements in large reasoning models (LRMs) have greatly improved their capabilities on complex reasoning tasks through Long Chains of Thought (CoTs). However, this approach often results in substantial redundancy, impairing computational efficiency and causing significant delays in real-time applications. Recent studies show that longer reasoning chains are frequently uncorrelated with correctness and can even be detrimental to accur