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Graph-Aware Late Chunking for Retrieval-Augmented Generation in Biomedical Literature

arXiv:2603.22633v1 Announce Type: new Abstract: Retrieval-Augmented Generation (RAG) systems for biomedical literature are typically evaluated using ranking metrics like Mean Reciprocal Rank (MRR), which measure how well the system identifies the single most relevant chunk. We argue that for full-text scientific documents, this paradigm is incomplete: it rewards retrieval precision while ignoring retrieval breadth -- the ability to surface evidence from across a document's structural sections. We propose GraLC-RAG, a framework that unifies late chunking with graph-aware structural intelligence, introducing structure-aware chunk boundary detection, UMLS knowledge graph infusion, and graph-guided hybrid retrieval. We evaluate six strategies on 2,359 IMRaD-filtered PubMed Central articles using 2,033 cross-section questions and two metric families: standard ranking metrics (MRR, Recall@k) and structural coverage metrics (SecCov@k, CS Recall). Our results expose a sharp divergence: content-similarity methods achieve the highest MRR (0.517) but always retrieve from a single section, while structure-aware methods retrieve from up to 15.6x more sections. Generation experiments show that KG-infused retrieval narrows the answer-quality gap to delta-F1 = 0.009 while maintaining 4.6x section diversity. These findings demonstrate that standard metrics systematically undervalue structural retrieval and that closing the multi-section synthesis gap is a key open problem for biomedical RAG.

AgentSLR: Automating Systematic Literature Reviews in Epidemiology with Agentic AI

arXiv:2603.22327v1 Announce Type: cross Abstract: Systematic literature reviews are essential for synthesizing scientific evidence but are costly, difficult to scale and time-intensive, creating bottlenecks for evidence-based policy. We study whether large language models can automate the complete systematic review workflow, from article retrieval, article screening, data extraction to report synthesis. Applied to epidemiological reviews of nine WHO-designated priority pathogens and validated against expert-curated ground truth, our open-source agentic pipeline (AgentSLR) achieves performance comparable to human researchers while reducing review time from approximately 7 weeks to 20 hours (a 58x speed-up). Our comparison of five frontier models reveals that performance on SLR is driven less by model size or inference cost than by each model's distinctive capabilities. Through human-in-the-loop validation, we identify key failure modes. Our results demonstrate that agentic AI can substantially accelerate scientific evidence synthesis in specialised domains.

Causal Direct Preference Optimization for Distributionally Robust Generative Recommendation

arXiv:2603.22335v1 Announce Type: cross Abstract: Direct Preference Optimization (DPO) guides large language models (LLMs) to generate recommendations aligned with user historical behavior distributions by minimizing preference alignment loss. However, our systematic empirical research and theoretical analysis reveal that DPO tends to amplify spurious correlations caused by environmental confounders during the alignment process, significantly undermining the generalization capability of LLM-based generative recommendation methods in out of distribution (OOD) scenarios. To mitigate this issue, we propose CausalDPO, an extension of DPO that incorporates a causal invariance learning mechanism. This method introduces a backdoor adjustment strategy during the preference alignment phase to eliminate interference from environmental confounders, explicitly models the latent environmental distribution using a soft clustering approach, and enhances robust consistency across diverse environments through invariance constraints. Theoretical analysis demonstrates that CausalDPO can effectively capture users stable preference structures across multiple environments, thereby improving the OOD generalization performance of LLM-based recommendation models. We conduct extensive experiments under four representative distribution shift settings to validate the effectiveness of CausalDPO, achieving an average performance improvement of 17.17% across four evaluation metrics.

Graphs RAG at Scale: Beyond Retrieval-Augmented Generation With Labeled Property Graphs and Resource Description Framework for Complex and Unknown Search Spaces

arXiv:2603.22340v1 Announce Type: cross Abstract: Recent advances in Retrieval-Augmented Generation (RAG) have revolutionized knowledge-intensive tasks, yet traditional RAG methods struggle when the search space is unknown or when documents are semi-structured or structured. We introduce a novel end-to-end Graph RAG framework that leverages both Labeled Property Graph (LPG) and Resource Description Framework (RDF) architectures to overcome these limitations. Our approach enables dynamic document retrieval without the need to pre-specify the number of documents and eliminates inefficient reranking. We propose an innovative method for converting documents into RDF triplets using JSON key-value pairs, facilitating seamless integration of semi-structured data. Additionally, we present a text to Cypher framework for LPG, achieving over 90% accuracy in real-time translation of text queries to Cypher, enabling fast and reliable query generation suitable for online applications. Our empirical evaluation demonstrates that Graph RAG significantly outperforms traditional embedding-based RAG in accuracy, response quality, and reasoning, especially for complex, semi-structured tasks. These findings establish Graph RAG as a transformative solution for next-generation retrieval-augmented systems.

Reasoner-Executor-Synthesizer: Scalable Agentic Architecture with Static O(1) Context Window

arXiv:2603.22367v1 Announce Type: cross Abstract: Large Language Models (LLMs) deployed as autonomous agents commonly use Retrieval-Augmented Generation (RAG), feeding retrieved documents into the context window, which creates two problems: the risk of hallucination grows with context length, and token cost scales linearly with dataset size. We propose the Reasoner-Executor-Synthesizer (RES) architecture, a three-layer design that strictly separates intent parsing (Reasoner), deterministic data retrieval and aggregation (Executor), and narrative generation (Synthesizer). The Executor uses zero LLM tokens and passes only fixed-size statistical summaries to the Synthesizer. We formally prove that RES achieves O(1) token complexity with respect to dataset size, and validate this on ScholarSearch, a scholarly research assistant backed by the Crossref API (130M+ articles). Across 100 benchmark runs, RES achieves a mean token cost of 1,574 tokens regardless of whether the dataset contains 42,000 or 16.3 million articles. The architecture eliminates data hallucination by construction: the LLM never sees raw records. KEYWORDS LLM agents; agentic architecture; hallucination elimination; token optimization; context window; retrieval-augmented generation; deterministic execution; scholarly metadata; Crossref API; O(1) complexity.

AI Co-Scientist for Ranking: Discovering Novel Search Ranking Models alongside LLM-based AI Agents with Cloud Computing Access

arXiv:2603.22376v1 Announce Type: cross Abstract: Recent advances in AI agents for software engineering and scientific discovery have demonstrated remarkable capabilities, yet their application to developing novel ranking models in commercial search engines remains unexplored. In this paper, we present an AI Co-Scientist framework that automates the full search ranking research pipeline: from idea generation to code implementation and GPU training job scheduling with expert in the loop. Our approach strategically employs single-LLM agents for routine tasks while leveraging multi-LLM consensus agents (GPT 5.2, Gemini Pro 3, and Claude Opus 4.5) for challenging phases such as results analysis and idea generation. To our knowledge, this is the first study in the ranking community to utilize an AI Co-Scientist framework for algorithmic research. We demonstrate that this framework discovered a novel technique for handling sequence features, with all model enhancements produced automatically, yielding substantial offline performance improvements. Our findings suggest that AI systems can discover ranking architectures comparable to those developed by human experts while significantly reducing routine research workloads.

Do Large Language Models Reduce Research Novelty? Evidence from Information Systems Journals

arXiv:2603.22510v1 Announce Type: cross Abstract: Large language models such as ChatGPT have increased scholarly output, but whether this productivity boost produces genuine intellectual advancement remains untested. I address this gap by measuring the semantic novelty of 13,847 articles published between 2020 and 2025 in 44 Information Systems journals. Using SPECTER2 embeddings, I operationalize novelty as the cosine distance between each paper and its nearest prior neighbors. A difference-in-differences design with the November 2022 release of ChatGPT as the treatment break reveals a heterogeneous pattern: authors affiliated with institutions in non-English-dominant countries show a 0.18 standard deviation decline in relative novelty compared to authors in English-dominant countries (beta = -0.176, p

GraphRAG for Engineering Diagrams: ChatP&ID Enables LLM Interaction with P&IDs

arXiv:2603.22528v1 Announce Type: cross Abstract: Large Language Models (LLMs) combined with Retrieval-Augmented Generation (RAG) and knowledge graphs offer new opportunities for interacting with engineering diagrams such as Piping and Instrumentation Diagrams (P&IDs). However, directly processing raw images or smart P&ID files with LLMs is often costly, inefficient, and prone to hallucinations. This work introduces ChatP&ID, an agentic framework that enables grounded and cost-effective natural-language interaction with P&IDs using Graph Retrieval-Augmented Generation (GraphRAG), a paradigm we refer to as GraphRAG for engineering diagrams. Smart P&IDs encoded in the DEXPI standard are transformed into structured knowledge graphs, which serve as the basis for graph-based retrieval and reasoning by LLM agents. This approach enables reliable querying of engineering diagrams while significantly reducing computational cost. Benchmarking across commercial LLM APIs (OpenAI, Anthropic) demonstrates that graph-based representations improve accuracy by 18% over raw image inputs and reduce token costs by 85% compared to directly ingesting smart P&ID files. While small open-source models still struggle to interpret knowledge graph formats and structured engineering data, integrating them with VectorRAG and PathRAG improves response accuracy by up to 40%. Notably, GPT-5-mini combined with ContextRAG achieves 91% accuracy at a cost of only $0.004 per task. The resulting ChatP&ID interface enables intuitive natural-language interaction with complex engineering diagrams and lays the groundwork for AI-assisted process engineering tasks such as Hazard and Operability Studies (HAZOP) and multi-agent analysis.
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  • flexvec: SQL Vector Retrieval with Programmatic Embedding Modulation Damian Delmas
    arXiv:2603.22587v1 Announce Type: cross Abstract: As AI agents become the primary consumers of retrieval APIs, there is an opportunity to expose more of the retrieval pipeline to the caller. flexvec is a retrieval kernel that exposes the embedding matrix and score array as a programmable surface, allowing arithmetic operations on both before selection. We refer to composing operations on this surface at query time as Programmatic Embedding Modulation (PEM). This paper describes a set of such op
     

flexvec: SQL Vector Retrieval with Programmatic Embedding Modulation

arXiv:2603.22587v1 Announce Type: cross Abstract: As AI agents become the primary consumers of retrieval APIs, there is an opportunity to expose more of the retrieval pipeline to the caller. flexvec is a retrieval kernel that exposes the embedding matrix and score array as a programmable surface, allowing arithmetic operations on both before selection. We refer to composing operations on this surface at query time as Programmatic Embedding Modulation (PEM). This paper describes a set of such operations and integrates them into a SQL interface via a query materializer that facilitates composable query primitives. On a production corpus of 240,000 chunks, three composed modulations execute in 19 ms end-to-end on a desktop CPU without approximate indexing. At one million chunks, the same operations execute in 82 ms.

DALDALL: Data Augmentation for Lexical and Semantic Diverse in Legal Domain by leveraging LLM-Persona

arXiv:2603.22765v1 Announce Type: cross Abstract: Data scarcity remains a persistent challenge in low-resource domains. While existing data augmentation methods leverage the generative capabilities of large language models (LLMs) to produce large volumes of synthetic data, these approaches often prioritize quantity over quality and lack domain-specific strategies. In this work, we introduce DALDALL, a persona-based data augmentation framework tailored for legal information retrieval (IR). Our method employs domain-specific professional personas--such as attorneys, prosecutors, and judges--to generate synthetic queries that exhibit substantially greater lexical and semantic diversity than vanilla prompting approaches. Experiments on the CLERC and COLIEE benchmarks demonstrate that persona-based augmentation achieves improvement in lexical diversity as measured by Self-BLEU scores, while preserving semantic fidelity to the original queries. Furthermore, dense retrievers fine-tuned on persona-augmented data consistently achieve competitive or superior recall performance compared to those trained on original data or generic augmentations. These findings establish persona-based prompting as an effective strategy for generating high-quality training data in specialized, low-resource domains.

KARMA: Knowledge-Action Regularized Multimodal Alignment for Personalized Search at Taobao

arXiv:2603.22779v1 Announce Type: cross Abstract: Large Language Models (LLMs) are equipped with profound semantic knowledge, making them a natural choice for injecting semantic generalization into personalized search systems. However, in practice we find that directly fine-tuning LLMs on industrial personalized tasks (e.g. next item prediction) often yields suboptimal results. We attribute this bottleneck to a critical Knowledge--Action Gap: the inherent conflict between preserving pre-trained semantic knowledge and aligning with specific personalized actions by discriminative objectives. Empirically, action-only training objectives induce Semantic Collapse, such as attention ``sinks''. This degradation severely cripples the LLM's generalization, failing to bring improvements to personalized search systems. We propose KARMA (Knowledge--Action Regularized Multimodal Alignment), a unified framework that treats semantic reconstruction as a train-only regularizer. KARMA optimizes a next-interest embedding for retrieval (Action) while enforcing semantic decodability (Knowledge) through two complementary objectives: (i) history-conditioned semantic generation, which anchors optimization to the LLM's native next-token distribution, and (ii) embedding-conditioned semantic reconstruction, which constrains the interest embedding to remain semantically recoverable. On Taobao search system, KARMA mitigates semantic collapse (attention-sink analysis) and improves both action metrics and semantic fidelity. In ablations, semantic decodability yields up to +22.5 HR@200. With KARMA, we achieve +0.25 CTR AUC in ranking, +1.86 HR in pre-ranking and +2.51 HR in recalling. Deployed online with low inference overhead at ranking stage, KARMA drives +0.5% increase in Item Click.

Reasoning over Semantic IDs Enhances Generative Recommendation

arXiv:2603.23183v1 Announce Type: cross Abstract: Recent advances in generative recommendation have leveraged pretrained LLMs by formulating sequential recommendation as autoregressive generation over a unified token space comprising language tokens and itemic identifiers, where each item is represented by a compact sequence of discrete tokens, namely Semantic IDs (SIDs). This SID-based formulation enables efficient decoding over large-scale item corpora and provides a natural interface for LLM-based recommenders to leverage rich world knowledge. Meanwhile, breakthroughs in LLM reasoning motivate reasoning-enhanced recommendation, yet effective reasoning over SIDs remains underexplored and challenging. Itemic tokens are not natively meaningful to LLMs; moreover, recommendation-oriented SID reasoning is hard to evaluate, making high-quality supervision scarce. To address these challenges, we propose SIDReasoner, a two-stage framework that elicits reasoning over SIDs by strengthening SID--language alignment to unlock transferable LLM reasoning, rather than relying on large amounts of recommendation-specific reasoning traces. Concretely, SIDReasoner first enhances SID-language alignment via multi-task training on an enriched SID-centered corpus synthesized by a stronger teacher model, grounding itemic tokens in diverse semantic and behavioral contexts. Building on this enhanced alignment, SIDReasoner further improves recommendation reasoning through outcome-driven reinforced optimization, which guides the model toward effective reasoning trajectories without requiring explicit reasoning annotations. Extensive experiments on three real-world datasets demonstrate the effectiveness of our reasoning-augmented SID-based generative recommendation. Beyond accuracy, the results highlight the broader potential of large reasoning models for generative recommendation, including improved interpretability and cross-domain generalization.

Training-free Adjustable Polynomial Graph Filtering for Ultra-fast Multimodal Recommendation

arXiv:2503.04406v3 Announce Type: replace-cross Abstract: Multimodal recommender systems improve the performance of canonical recommender systems with no item features by utilizing diverse content types such as text, images, and videos, while alleviating inherent sparsity of user-item interactions and accelerating user engagement. However, current neural network-based models often incur significant computational overhead due to the complex training process required to learn and integrate information from multiple modalities. To address this challenge, we propose a training-free multimodal recommendation method grounded in graph filtering, designed for multimodal recommendation systems to achieve efficient and accurate recommendation. Specifically, the proposed method first constructs multiple similarity graphs for two distinct modalities as well as user-item interaction data. Then, it optimally fuses these multimodal signals using a polynomial graph filter that allows for precise control of the frequency response by adjusting frequency bounds. Furthermore, the filter coefficients are treated as hyperparameters, enabling flexible and data-driven adaptation. Extensive experiments on real-world benchmark datasets demonstrate that the proposed method not only improves recommendation accuracy by up to 22.25% compared to the best competitor but also dramatically reduces computational costs by achieving the runtime of less than 10 seconds.

MOON2.0: Dynamic Modality-balanced Multimodal Representation Learning for E-commerce Product Understanding

arXiv:2511.12449v2 Announce Type: replace-cross Abstract: Recent Multimodal Large Language Models (MLLMs) have significantly advanced e-commerce product understanding. However, they still face three challenges: (i) the modality imbalance induced by modality mixed training; (ii) underutilization of the intrinsic alignment relationships among visual and textual information within a product; and (iii) limited handling of noise in e-commerce multimodal data. To address these, we propose MOON2.0, a dynamic modality-balanced MultimOdal representation learning framework for e-commerce prOduct uNderstanding. It comprises: (1) a Modality-driven Mixture-of-Experts (MoE) that adaptively processes input samples by their modality composition, enabling Multimodal Joint Learning to mitigate the modality imbalance; (2) a Dual-level Alignment method to better leverage semantic alignment properties inside individual products; and (3) an MLLM-based Image-text Co-augmentation strategy that integrates textual enrichment with visual expansion, coupled with Dynamic Sample Filtering to improve training data quality. We further release MBE2.0, a co-augmented Multimodal representation Benchmark for E-commerce representation learning and evaluation at https://huggingface.co/datasets/ZHNie/MBE2.0. Experiments show that MOON2.0 delivers state-of-the-art zero-shot performance on MBE2.0 and multiple public datasets. Furthermore, attention-based heatmap visualization provides qualitative evidence of improved multimodal alignment of MOON2.0.

Hierarchical Long Video Understanding with Audiovisual Entity Cohesion and Agentic Search

arXiv:2601.13719v2 Announce Type: replace-cross Abstract: Long video understanding presents significant challenges for vision-language models due to extremely long context windows. Existing solutions relying on naive chunking strategies with retrieval-augmented generation, typically suffer from information fragmentation and a loss of global coherence. We present HAVEN, a unified framework for long-video understanding that enables coherent and comprehensive reasoning by integrating audiovisual entity cohesion and hierarchical video indexing with agentic search. First, we preserve semantic consistency by integrating entity-level representations across visual and auditory streams, while organizing content into a structured hierarchy spanning global summary, scene, segment, and entity levels. Then we employ an agentic search mechanism to enable dynamic retrieval and reasoning across these layers, facilitating coherent narrative reconstruction and fine-grained entity tracking. Extensive experiments demonstrate that our method achieves good temporal coherence, entity consistency, and retrieval efficiency, establishing a new state-of-the-art with an overall accuracy of 84.1% on LVBench. Notably, it achieves outstanding performance in the challenging reasoning category, reaching 80.1%. These results highlight the effectiveness of structured, multimodal reasoning for comprehensive and context-consistent understanding of long-form videos.

From Conflict to Consensus: Boosting Medical Reasoning via Multi-Round Agentic RAG

arXiv:2603.03292v2 Announce Type: replace-cross Abstract: Large Language Models (LLMs) exhibit high reasoning capacity in medical question-answering, but their tendency to produce hallucinations and outdated knowledge poses critical risks in healthcare fields. While Retrieval-Augmented Generation (RAG) mitigates these issues, existing methods rely on noisy token-level signals and lack the multi-round refinement required for complex reasoning. In the paper, we propose MA-RAG (Multi-Round Agentic RAG), a framework that facilitates test-time scaling for complex medical reasoning by iteratively evolving both external evidence and internal reasoning history within an agentic refinement loop. At each round, the agent transforms semantic conflict among candidate responses into actionable queries to retrieve external evidence, while optimizing history reasoning traces to mitigate long-context degradation. MA-RAG extends the self-consistency principle by leveraging the lack of consistency as a proactive signal for multi-round agentic reasoning and retrieval, and mirrors a boosting mechanism that iteratively minimizes the residual error toward a stable, high-fidelity medical consensus. Extensive evaluations across 7 medical Q&A benchmarks show that MA-RAG consistently surpasses competitive inference-time scaling and RAG baselines, delivering substantial +6.8 points on average accuracy over the backbone model. Our code is available at https://github.com/NJU-RL/MA-RAG.
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