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Can AI autonomously build, operate, and use the entire data stack?

arXiv:2512.07926v1 Announce Type: new Abstract: Enterprise data management is a monumental task. It spans data architecture and systems, integration, quality, governance, and continuous improvement. While AI assistants can help specific persona, such as data engineers and stewards, to navigate and configure the data stack, they fall far short of full automation. However, as AI becomes increasingly capable of tackling tasks that have previously resisted automation due to inherent complexities, we believe there is an imminent opportunity to target fully autonomous data estates. Currently, AI is used in different parts of the data stack, but in this paper, we argue for a paradigm shift from the use of AI in independent data component operations towards a more holistic and autonomous handling of the entire data lifecycle. Towards that end, we explore how each stage of the modern data stack can be autonomously managed by intelligent agents to build self-sufficient systems that can be used not only by human end-users, but also by AI itself. We begin by describing the mounting forces and opportunities that demand this paradigm shift, examine how agents can streamline the data lifecycle, and highlight open questions and areas where additional research is needed. We hope this work will inspire lively debate, stimulate further research, motivate collaborative approaches, and facilitate a more autonomous future for data systems.
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Toward an AI Reasoning-Enabled System for Patient-Clinical Trial Matching

arXiv:2512.08026v1 Announce Type: new Abstract: Screening patients for clinical trial eligibility remains a manual, time-consuming, and resource-intensive process. We present a secure, scalable proof-of-concept system for Artificial Intelligence (AI)-augmented patient-trial matching that addresses key implementation challenges: integrating heterogeneous electronic health record (EHR) data, facilitating expert review, and maintaining rigorous security standards. Leveraging open-source, reasoning-enabled large language models (LLMs), the system moves beyond binary classification to generate structured eligibility assessments with interpretable reasoning chains that support human-in-the-loop review. This decision support tool represents eligibility as a dynamic state rather than a fixed determination, identifying matches when available and offering actionable recommendations that could render a patient eligible in the future. The system aims to reduce coordinator burden, intelligently broaden the set of trials considered for each patient and guarantee comprehensive auditability of all AI-generated outputs.
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Scalable Back-End for an AI-Based Diabetes Prediction Application

arXiv:2512.08147v1 Announce Type: new Abstract: The rising global prevalence of diabetes necessitates early detection to prevent severe complications. While AI-powered prediction applications offer a promising solution, they require a responsive and scalable back-end architecture to serve a large user base effectively. This paper details the development and evaluation of a scalable back-end system designed for a mobile diabetes prediction application. The primary objective was to maintain a failure rate below 5% and an average latency of under 1000 ms. The architecture leverages horizontal scaling, database sharding, and asynchronous communication via a message queue. Performance evaluation showed that 83% of the system's features (20 out of 24) met the specified performance targets. Key functionalities such as user profile management, activity tracking, and read-intensive prediction operations successfully achieved the desired performance. The system demonstrated the ability to handle up to 10,000 concurrent users without issues, validating its scalability. The implementation of asynchronous communication using RabbitMQ proved crucial in minimizing the error rate for computationally intensive prediction requests, ensuring system reliability by queuing requests and preventing data loss under heavy load.
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Beyond Traditional Diagnostics: Transforming Patient-Side Information into Predictive Insights with Knowledge Graphs and Prototypes

arXiv:2512.08261v1 Announce Type: new Abstract: Predicting diseases solely from patient-side information, such as demographics and self-reported symptoms, has attracted significant research attention due to its potential to enhance patient awareness, facilitate early healthcare engagement, and improve healthcare system efficiency. However, existing approaches encounter critical challenges, including imbalanced disease distributions and a lack of interpretability, resulting in biased or unreliable predictions. To address these issues, we propose the Knowledge graph-enhanced, Prototype-aware, and Interpretable (KPI) framework. KPI systematically integrates structured and trusted medical knowledge into a unified disease knowledge graph, constructs clinically meaningful disease prototypes, and employs contrastive learning to enhance predictive accuracy, which is particularly important for long-tailed diseases. Additionally, KPI utilizes large language models (LLMs) to generate patient-specific, medically relevant explanations, thereby improving interpretability and reliability. Extensive experiments on real-world datasets demonstrate that KPI outperforms state-of-the-art methods in predictive accuracy and provides clinically valid explanations that closely align with patient narratives, highlighting its practical value for patient-centered healthcare delivery.
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Principles2Plan: LLM-Guided System for Operationalising Ethical Principles into Plans

arXiv:2512.08536v1 Announce Type: new Abstract: Ethical awareness is critical for robots operating in human environments, yet existing automated planning tools provide little support. Manually specifying ethical rules is labour-intensive and highly context-specific. We present Principles2Plan, an interactive research prototype demonstrating how a human and a Large Language Model (LLM) can collaborate to produce context-sensitive ethical rules and guide automated planning. A domain expert provides the planning domain, problem details, and relevant high-level principles such as beneficence and privacy. The system generates operationalisable ethical rules consistent with these principles, which the user can review, prioritise, and supply to a planner to produce ethically-informed plans. To our knowledge, no prior system supports users in generating principle-grounded rules for classical planning contexts. Principles2Plan showcases the potential of human-LLM collaboration for making ethical automated planning more practical and feasible.
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Multi-Agent Intelligence for Multidisciplinary Decision-Making in Gastrointestinal Oncology

arXiv:2512.08674v1 Announce Type: new Abstract: Multimodal clinical reasoning in the field of gastrointestinal (GI) oncology necessitates the integrated interpretation of endoscopic imagery, radiological data, and biochemical markers. Despite the evident potential exhibited by Multimodal Large Language Models (MLLMs), they frequently encounter challenges such as context dilution and hallucination when confronted with intricate, heterogeneous medical histories. In order to address these limitations, a hierarchical Multi-Agent Framework is proposed, which emulates the collaborative workflow of a human Multidisciplinary Team (MDT). The system attained a composite expert evaluation score of 4.60/5.00, thereby demonstrating a substantial improvement over the monolithic baseline. It is noteworthy that the agent-based architecture yielded the most substantial enhancements in reasoning logic and medical accuracy. The findings indicate that mimetic, agent-based collaboration provides a scalable, interpretable, and clinically robust paradigm for automated decision support in oncology.
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Towards Foundation Models with Native Multi-Agent Intelligence

arXiv:2512.08743v1 Announce Type: new Abstract: Foundation models (FMs) are increasingly assuming the role of the "brain" of AI agents. While recent efforts have begun to equip FMs with native single-agent abilities -- such as GUI interaction or integrated tool use -- we argue that the next frontier is endowing FMs with native multi-agent intelligence. We identify four core capabilities of FMs in multi-agent contexts: understanding, planning, efficient communication, and adaptation. Contrary to assumptions about the spontaneous emergence of such abilities, we provide extensive empirical evidence across 41 large language models showing that strong single-agent performance alone does not automatically yield robust multi-agent intelligence. To address this gap, we outline key research directions -- spanning dataset construction, evaluation, training paradigms, and safety considerations -- for building FMs with native multi-agent intelligence.
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The Theory of Strategic Evolution: Games with Endogenous Players and Strategic Replicators

arXiv:2512.07901v1 Announce Type: cross Abstract: This paper develops the Theory of Strategic Evolution, a general model for systems in which the population of players, strategies, and institutional rules evolve together. The theory extends replicator dynamics to settings with endogenous players, multi level selection, innovation, constitutional change, and meta governance. The central mathematical object is a Poiesis stack: a hierarchy of strategic layers linked by cross level gain matrices. Under small gain conditions, the system admits a global Lyapunov function and satisfies selection, tracking, and stochastic stability results at every finite depth. We prove that the class is closed under block extension, innovation events, heterogeneous utilities, continuous strategy spaces, and constitutional evolution. The closure theorem shows that no new dynamics arise at higher levels and that unrestricted self modification cannot preserve Lyapunov structure. The theory unifies results from evolutionary game theory, institutional design, innovation dynamics, and constitutional political economy, providing a general mathematical model of long run strategic adaptation.
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Long-only cryptocurrency portfolio management by ranking the assets: a neural network approach

arXiv:2512.08124v1 Announce Type: cross Abstract: This paper will propose a novel machine learning based portfolio management method in the context of the cryptocurrency market. Previous researchers mainly focus on the prediction of the movement for specific cryptocurrency such as the bitcoin(BTC) and then trade according to the prediction. In contrast to the previous work that treats the cryptocurrencies independently, this paper manages a group of cryptocurrencies by analyzing the relative relationship. Specifically, in each time step, we utilize the neural network to predict the rank of the future return of the managed cryptocurrencies and place weights accordingly. By incorporating such cross-sectional information, the proposed methods is shown to profitable based on the backtesting experiments on the real daily cryptocurrency market data from May, 2020 to Nov, 2023. During this 3.5 years, the market experiences the full cycle of bullish, bearish and stagnant market conditions. Despite under such complex market conditions, the proposed method outperforms the existing methods and achieves a Sharpe ratio of 1.01 and annualized return of 64.26%. Additionally, the proposed method is shown to be robust to the increase of transaction fee.
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Biothreat Benchmark Generation Framework for Evaluating Frontier AI Models I: The Task-Query Architecture

arXiv:2512.08130v1 Announce Type: cross Abstract: Both model developers and policymakers seek to quantify and mitigate the risk of rapidly-evolving frontier artificial intelligence (AI) models, especially large language models (LLMs), to facilitate bioterrorism or access to biological weapons. An important element of such efforts is the development of model benchmarks that can assess the biosecurity risk posed by a particular model. This paper describes the first component of a novel Biothreat Benchmark Generation (BBG) Framework. The BBG approach is designed to help model developers and evaluators reliably measure and assess the biosecurity risk uplift and general harm potential of existing and future AI models, while accounting for key aspects of the threat itself that are often overlooked in other benchmarking efforts, including different actor capability levels, and operational (in addition to purely technical) risk factors. As a pilot, the BBG is first being developed to address bacterial biological threats only. The BBG is built upon a hierarchical structure of biothreat categories, elements and tasks, which then serves as the basis for the development of task-aligned queries. This paper outlines the development of this biothreat task-query architecture, which we have named the Bacterial Biothreat Schema, while future papers will describe follow-on efforts to turn queries into model prompts, as well as how the resulting benchmarks can be implemented for model evaluation. Overall, the BBG Framework, including the Bacterial Biothreat Schema, seeks to offer a robust, re-usable structure for evaluating bacterial biological risks arising from LLMs across multiple levels of aggregation, which captures the full scope of technical and operational requirements for biological adversaries, and which accounts for a wide spectrum of biological adversary capabilities.
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A Practical Framework for Evaluating Medical AI Security: Reproducible Assessment of Jailbreaking and Privacy Vulnerabilities Across Clinical Specialties

arXiv:2512.08185v1 Announce Type: cross Abstract: Medical Large Language Models (LLMs) are increasingly deployed for clinical decision support across diverse specialties, yet systematic evaluation of their robustness to adversarial misuse and privacy leakage remains inaccessible to most researchers. Existing security benchmarks require GPU clusters, commercial API access, or protected health data -- barriers that limit community participation in this critical research area. We propose a practical, fully reproducible framework for evaluating medical AI security under realistic resource constraints. Our framework design covers multiple medical specialties stratified by clinical risk -- from high-risk domains such as emergency medicine and psychiatry to general practice -- addressing jailbreaking attacks (role-playing, authority impersonation, multi-turn manipulation) and privacy extraction attacks. All evaluation utilizes synthetic patient records requiring no IRB approval. The framework is designed to run entirely on consumer CPU hardware using freely available models, eliminating cost barriers. We present the framework specification including threat models, data generation methodology, evaluation protocols, and scoring rubrics. This proposal establishes a foundation for comparative security assessment of medical-specialist models and defense mechanisms, advancing the broader goal of ensuring safe and trustworthy medical AI systems.
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ClinicalTrialsHub: Bridging Registries and Literature for Comprehensive Clinical Trial Access

arXiv:2512.08193v1 Announce Type: cross Abstract: We present ClinicalTrialsHub, an interactive search-focused platform that consolidates all data from ClinicalTrials.gov and augments it by automatically extracting and structuring trial-relevant information from PubMed research articles. Our system effectively increases access to structured clinical trial data by 83.8% compared to relying on ClinicalTrials.gov alone, with potential to make access easier for patients, clinicians, researchers, and policymakers, advancing evidence-based medicine. ClinicalTrialsHub uses large language models such as GPT-5.1 and Gemini-3-Pro to enhance accessibility. The platform automatically parses full-text research articles to extract structured trial information, translates user queries into structured database searches, and provides an attributed question-answering system that generates evidence-grounded answers linked to specific source sentences. We demonstrate its utility through a user study involving clinicians, clinical researchers, and PhD students of pharmaceutical sciences and nursing, and a systematic automatic evaluation of its information extraction and question answering capabilities.
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Are generative AI text annotations systematically biased?

arXiv:2512.08404v1 Announce Type: cross Abstract: This paper investigates bias in GLLM annotations by conceptually replicating manual annotations of Boukes (2024). Using various GLLMs (Llama3.1:8b, Llama3.3:70b, GPT4o, Qwen2.5:72b) in combination with five different prompts for five concepts (political content, interactivity, rationality, incivility, and ideology). We find GLLMs perform adequate in terms of F1 scores, but differ from manual annotations in terms of prevalence, yield substantively different downstream results, and display systematic bias in that they overlap more with each other than with manual annotations. Differences in F1 scores fail to account for the degree of bias.
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Biothreat Benchmark Generation Framework for Evaluating Frontier AI Models III: Implementing the Bacterial Biothreat Benchmark (B3) Dataset

arXiv:2512.08459v1 Announce Type: cross Abstract: The potential for rapidly-evolving frontier artificial intelligence (AI) models, especially large language models (LLMs), to facilitate bioterrorism or access to biological weapons has generated significant policy, academic, and public concern. Both model developers and policymakers seek to quantify and mitigate any risk, with an important element of such efforts being the development of model benchmarks that can assess the biosecurity risk posed by a particular model. This paper discusses the pilot implementation of the Bacterial Biothreat Benchmark (B3) dataset. It is the third in a series of three papers describing an overall Biothreat Benchmark Generation (BBG) framework, with previous papers detailing the development of the B3 dataset. The pilot involved running the benchmarks through a sample frontier AI model, followed by human evaluation of model responses, and an applied risk analysis of the results along several dimensions. Overall, the pilot demonstrated that the B3 dataset offers a viable, nuanced method for rapidly assessing the biosecurity risk posed by a LLM, identifying the key sources of that risk and providing guidance for priority areas of mitigation priority.
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Multi-domain performance analysis with scores tailored to user preferences

arXiv:2512.08715v1 Announce Type: cross Abstract: The performance of algorithms, methods, and models tends to depend heavily on the distribution of cases on which they are applied, this distribution being specific to the applicative domain. After performing an evaluation in several domains, it is highly informative to compute a (weighted) mean performance and, as shown in this paper, to scrutinize what happens during this averaging. To achieve this goal, we adopt a probabilistic framework and consider a performance as a probability measure (e.g., a normalized confusion matrix for a classification task). It appears that the corresponding weighted mean is known to be the summarization, and that only some remarkable scores assign to the summarized performance a value equal to a weighted arithmetic mean of the values assigned to the domain-specific performances. These scores include the family of ranking scores, a continuum parameterized by user preferences, and that the weights to consider in the arithmetic mean depend on the user preferences. Based on this, we rigorously define four domains, named easiest, most difficult, preponderant, and bottleneck domains, as functions of user preferences. After establishing the theory in a general setting, regardless of the task, we develop new visual tools for two-class classification.
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The Necessity of Imperfection:Reversing Model Collapse via Simulating Cognitive Boundedness

arXiv:2512.01354v3 Announce Type: replace Abstract: Although synthetic data is widely promoted as a remedy, its prevailing production paradigm -- one optimizing for statistical smoothness -- systematically removes the long-tail, cognitively grounded irregularities that characterize human text. Prolonged training on such statistically optimal but cognitively impoverished data accelerates model collapse. This paper proposes a paradigm shift: instead of imitating the surface properties of data, we simulate the cognitive processes that generate human text. We introduce the Prompt-driven Cognitive Computing Framework (PMCSF), whose core consists of a Cognitive State Decoder (CSD) that reverse-engineers unstructured text into structured cognitive vectors, and a Cognitive Text Encoder (CTE) that re-materializes these states into text enriched with human-typical imperfections via mathematically defined Cognitive Perturbation Operators. The framework is validated through a two-stage objective evaluation pipeline. First, in cognitive codec verification, CTE text yields a Jensen-Shannon divergence of 0.0614 from human text (vs. 0.4431 for standard LLM output), passes double-blind professional media review, and achieves an intraclass correlation coefficient ICC > 0.9 for cognitive profile alignment across heterogeneous models. Second, in functional gain evaluation, isomorphic stress tests in the A-share market show that strategies incorporating CTE-generated data reduce maximum drawdown by 47.4% during the 2015 crash and deliver 8.6% Defensive Alpha, exceeding transaction costs by a factor of 33. Our findings demonstrate that modelling human cognitive limitations -- not copying surface data -- enables synthetic data with genuine functional gain, offering a viable technical pathway toward resolving the AI data-collapse crisis.
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AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery

arXiv:2501.06039v2 Announce Type: replace-cross Abstract: Spatial proteomics technologies have transformed our understanding of complex tissue architecture in cancer but present unique challenges for computational analysis. Each study uses a different marker panel and protocol, and most methods are tailored to single cohorts, which limits knowledge transfer and robust biomarker discovery. Here we present Virtual Tissues (VirTues), a general-purpose foundation model for spatial proteomics that learns marker-aware, multi-scale representations of proteins, cells, niches and tissues directly from multiplex imaging data. From a single pretrained backbone, VirTues supports marker reconstruction, cell typing and niche annotation, spatial biomarker discovery, and patient stratification, including zero-shot annotation across heterogeneous panels and datasets. In triple-negative breast cancer, VirTues-derived biomarkers predict anti-PD-L1 chemo-immunotherapy response and stratify disease-free survival in an independent cohort, outperforming state-of-the-art biomarkers derived from the same datasets and current clinical stratification schemes.
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OMNIGUARD: An Efficient Approach for AI Safety Moderation Across Languages and Modalities

arXiv:2505.23856v2 Announce Type: replace-cross Abstract: The emerging capabilities of large language models (LLMs) have sparked concerns about their immediate potential for harmful misuse. The core approach to mitigate these concerns is the detection of harmful queries to the model. Current detection approaches are fallible, and are particularly susceptible to attacks that exploit mismatched generalization of model capabilities (e.g., prompts in low-resource languages or prompts provided in non-text modalities such as image and audio). To tackle this challenge, we propose Omniguard, an approach for detecting harmful prompts across languages and modalities. Our approach (i) identifies internal representations of an LLM/MLLM that are aligned across languages or modalities and then (ii) uses them to build a language-agnostic or modality-agnostic classifier for detecting harmful prompts. Omniguard improves harmful prompt classification accuracy by 11.57\% over the strongest baseline in a multilingual setting, by 20.44\% for image-based prompts, and sets a new SOTA for audio-based prompts. By repurposing embeddings computed during generation, Omniguard is also very efficient ($\approx\!120 \times$ faster than the next fastest baseline). Code and data are available at: https://github.com/vsahil/OmniGuard.
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Edge Deployment of Small Language Models, a comprehensive comparison of CPU, GPU and NPU backends

arXiv:2511.22334v2 Announce Type: replace-cross Abstract: Edge computing processes data where it is generated, enabling faster decisions, lower bandwidth usage, and improved privacy. However, edge devices typically operate under strict constraints on processing power, memory, and energy consumption, making them unsuitable for large language models (LLMs). Fortunately, Small Language Models (SLMs) offer lightweight alternatives that bring AI inference to resource-constrained environments by significantly reducing computational cost while remaining suitable for specialization and customization. In this scenario, selecting the hardware platform that best balances performance and efficiency for SLM inference is challenging due to strict resource limitations. To address this issue, this study evaluates the inference performance and energy efficiency of commercial CPUs (Intel and ARM), GPUs (NVIDIA), and NPUs (RaiderChip) for running SLMs. GPUs, the usual platform of choice, are compared against commercial NPUs and recent multi-core CPUs. While NPUs leverage custom hardware designs optimized for computation, modern CPUs increasingly incorporate dedicated features targeting language-model workloads. Using a common execution framework and a suite of state-of-the-art SLMs, we analyze both maximum achievable performance and processing and energy efficiency across commercial solutions available for each platform. The results indicate that specialized backends outperform general-purpose CPUs, with NPUs achieving the highest performance by a wide margin. Bandwidth normalization proves essential for fair cross-architecture comparisons. Although low-power ARM processors deliver competitive results when energy usage is considered, metrics that combine performance and power (such as EDP) again highlight NPUs as the dominant architecture. These findings show that designs optimized for both efficiency and performance offer a clear advantage for edge workloads.
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Development of a Hospital-at-Home Digital Twin for Patients With Frailty: Scoping Review

Background: Increasing demand on healthcare systems requires innovative and transformative solutions to deliver efficient, high-quality care. One promising approach is Digital Twin (DT) technology, which leverages real time data to create dynamic virtual representations of a physical entity (individuals or space) to anticipate future scenarios and support care decisions. While DTs have been explored in various sectors, their application in Hospital at Home (HaH), which delivers acute level care in home environments, remains unexplored. Objective: This review bridges a critical knowledge gap and examines the existing evidence on DT-enabling tools for managing patients with frailty in home settings. This will identify the underpinning architectural components required to inform a HaH-DT system which can support clinical decision-making. Methods: Six electronic databases (Embase, MEDLINE, Cochrane CENTRAL, CINAHL, Web of Science and Scopus) were searched, along with grey literature, to identifying primary studies published in English, between January 2019 and September 2025. Included studies had to report on the monitoring or management of patients with frailty within their own home, and information was charted on a pre-defined data collection form to answer the research objectives. Review articles, protocols, and conference abstracts were excluded. Results: Sixty-nine reports were included, of which 54% (n=37) used quantitative approaches, and 36% (n=25) were pilot or feasibility studies. Reports were analysed for DT-enabling tools and systematically mapped across the proposed five-layered DT architecture: sensing, communication, storage, analytics, and visualisation. Taxonomies of DT layers, their interconnections, and the classifications of the types of data collected (e.g., about the patient, the home environment, the use of medical equipment) are presented. This evidence identifies DT-enabling tools used for a variety of functions and a range of sensing technologies that exist (e.g., passive sensing via wearables, active physiological sensors, ambient sensors to detect motion/environmental changes). The most prevalent modes of communication were wireless and network-based (n=36), with the majority using Bluetooth (n=12). This review highlights better understanding of data management, in particular secure storage, is required within local healthcare systems. The emerging potential of predictive and prescriptive analytics, which can enable clinicians to predict risk, support clinical decision-making, or activate alert-triggered health interventions were mapped. Existing evidence suggests analytics methods are currently largely descriptive with a lack of advanced methods such as prescriptive analytics to enable recommendations of an optimal course of action, and the absence of diagnostic analytics which can highlight why a situation has occurred. Reported DT-enabling tools demonstrate patient-centered benefits, including enhanced motivation, reassurance, and personalised care. However, concerns persist regarding device accuracy, user acceptability, and implications for carers and organisational workflows. Conclusions: This review is among the first to systematically map DT-enabling tools to inform a potential HaH-DT in patients with frailty and organised by a 5-layered conceptual model. Understanding these architectural layers provides the foundations to enable stakeholders advance research and development in areas where there are knowledge gaps and consider how a HaH DT can effectively operate within current healthcare systems. By leveraging technology-enabled care in complex home-based settings, there is great potential to deliver safer, personalised and timely care.
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