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A Latent Risk-Aware Machine Learning Approach for Predicting Operational Success in Clinical Trials based on TrialsBank

arXiv:2603.29041v1 Announce Type: cross Abstract: Clinical trials are characterized by high costs, extended timelines, and substantial operational risk, yet reliable prospective methods for predicting trial success before initiation remain limited. Existing artificial intelligence approaches often focus on isolated metrics or specific development stages and frequently rely on variables unavailable at the trial design phase, limiting real-world applicability. We present a hierarchical latent risk-aware machine learning framework for prospective prediction of clinical trial operational success using a curated subset of TrialsBank, a proprietary AI-ready database developed by Sorintellis, comprising 13,700 trials. Operational success was defined as the ability to initiate, conduct, and complete a clinical trial according to planned timelines, recruitment targets, and protocol specifications through database lock. This approach decomposes operational success prediction into two modeling stages. First, intermediate latent operational risk factors are predicted using more than 180 drug- and trial-level features available before trial initiation. These predicted latent risks are then integrated into a downstream model to estimate the probability of operational success. A staged data-splitting strategy was employed to prevent information leakage, and models were benchmarked using XGBoost, CatBoost, and Explainable Boosting Machines. Across Phase I-III, the framework achieves strong out-of-sample performance, with F1-scores of 0.93, 0.92, and 0.91, respectively. Incorporating latent risk drivers improves discrimination of operational failures, and performance remains robust under independent inference evaluation. These results demonstrate that clinical trial operational success can be prospectively forecasted using a latent risk-aware AI framework, enabling early risk assessment and supporting data-driven clinical development decision-making.
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Agenda-based Narrative Extraction: Steering Pathfinding Algorithms with Large Language Models

arXiv:2603.29661v1 Announce Type: cross Abstract: Existing narrative extraction methods face a trade-off between coherence, interactivity, and multi-storyline support. Narrative Maps supports rich interaction and generates multiple storylines as a byproduct of its coverage constraints, though this comes at the cost of individual path coherence. Narrative Trails achieves high coherence through maximum capacity path optimization but provides no mechanism for user guidance or multiple perspectives. We introduce agenda-based narrative extraction, a method that bridges this gap by integrating large language models into the Narrative Trails pathfinding process to steer storyline construction toward user-specified perspectives. Our approach uses an LLM at each step to rank candidate documents based on their alignment with a given agenda while maintaining narrative coherence. Running the algorithm with different agendas yields different storylines through the same corpus. We evaluated our approach on a news article corpus using LLM judges with Claude Opus 4.5 and GPT 5.1, measuring both coherence and agenda alignment across 64 endpoint pairs and 6 agendas. LLM-driven steering achieves 9.9% higher alignment than keyword matching on semantic agendas (p=0.017), with 13.3% improvement on \textit{Regime Crackdown} specifically (p=0.037), while keyword matching remains competitive on agendas with literal keyword overlap. The coherence cost is minimal: LLM steering reduces coherence by only 2.2% compared to the agenda-agnostic baseline. Counter-agendas that contradict the source material score uniformly low (2.2-2.5) across all methods, confirming that steering cannot fabricate unsupported narratives.
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Symbol Grounding in Neuro-Symbolic AI: A Gentle Introduction to Reasoning Shortcuts

arXiv:2510.14538v2 Announce Type: replace Abstract: Neuro-symbolic (NeSy) AI aims to develop deep neural networks whose predictions comply with prior knowledge encoding, e.g. safety or structural constraints. As such, it represents one of the most promising avenues for reliable and trustworthy AI. The core idea behind NeSy AI is to combine neural and symbolic steps: neural networks are typically responsible for mapping low-level inputs into high-level symbolic concepts, while symbolic reasoning infers predictions compatible with the extracted concepts and the prior knowledge. Despite their promise, it was recently shown that - whenever the concepts are not supervised directly - NeSy models can be affected by Reasoning Shortcuts (RSs). That is, they can achieve high label accuracy by grounding the concepts incorrectly. RSs can compromise the interpretability of the model's explanations, performance in out-of-distribution scenarios, and therefore reliability. At the same time, RSs are difficult to detect and prevent unless concept supervision is available, which is typically not the case. However, the literature on RSs is scattered, making it difficult for researchers and practitioners to understand and tackle this challenging problem. This overview addresses this issue by providing a gentle introduction to RSs, discussing their causes and consequences in intuitive terms. It also reviews and elucidates existing theoretical characterizations of this phenomenon. Finally, it details methods for dealing with RSs, including mitigation and awareness strategies, and maps their benefits and limitations. By reformulating advanced material in a digestible form, this overview aims to provide a unifying perspective on RSs to lower the bar to entry for tackling them. Ultimately, we hope this overview contributes to the development of reliable NeSy and trustworthy AI models.
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Deconstruction of a spino-brain–spinal cord circuit that drives chronic pain

Nature, Published online: 01 April 2026; doi:10.1038/s41586-026-10296-y

In mice, a circuit between the spinal cord and various regions of the brain, centring on spinal-cord-projecting neurons in the rostral ventromedial medulla, has a key role in driving chronic pain.
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General scales unlock AI evaluation with explanatory and predictive power

Nature, Published online: 01 April 2026; doi:10.1038/s41586-026-10303-2

A fully automated methodology based on rubrics capturing a broad range of cognitive and intellectual demands is illustrated using LLMs and tasks, demonstrating a new way to evaluate the capabilities of AI systems and anticipate their performance.
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Reproducibility and robustness of economics and political science research

Nature, Published online: 01 April 2026; doi:10.1038/s41586-026-10251-x

Robustness checks and reproduction of analyses with existing and updated data based on 110 articles in economics and political science journals with data and code-sharing requirements found high levels of robustness and reproducibility and determined that robustness was not dependent on author characteristics or data availability.
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Two-step clinical care pathway to predict MASLD-related advanced fibrosis and long-term outcomes in type 2 diabetes

Gut. 2026 Feb 9;75(3):576-587. doi: 10.1136/gutjnl-2025-337506.

ABSTRACT

BACKGROUND: Current guidelines recommend a two-step approach for risk stratification of metabolic dysfunction-associated steatotic liver disease (MASLD), starting with Fibrosis-4 index (FIB-4) followed by liver stiffness measurement (LSM) using vibration-controlled transient elastography (VCTE).

OBJECTIVE: To evaluate this approach for predicting advanced fibrosis and liver-related events (LREs) in patients with type 2 diabetes (T2D).

DESIGN: A prospective liver biopsy cohort of T2D patients with histologically confirmed MASLD from seven centres in China was used to assess diagnostic performance for advanced fibrosis. The international VCTE-Prognosis cohort, including T2D patients with MASLD who underwent VCTE at 16 centres in the USA, Europe and Asia, with longitudinal follow-up, was used to assess LREs, defined as hepatic decompensation or hepatocellular carcinoma.

RESULTS: 4781 participants were included. In the liver biopsy cohort (n=352; 22.2% with advanced fibrosis), applying LSM thresholds of <8 kPa and >12 kPa after FIB-4 classified patients into 63.4% low-risk, 9.4% intermediate-risk and 27.3% high-risk, with a correct classification rate of 71%. In the VCTE-Prognosis cohort (n=4429; median follow-up 51.3 (IQR 27.4-70.7) months), 140 (3.2%) patients developed LREs (110 (2.5%) with hepatic decompensation and 59 (1.3%) with hepatocellular carcinoma). The two-step approach classified 72.6%, 6.8% and 20.6% of patients into low-risk, intermediate-risk and high-risk groups, with corresponding 5-year cumulative LRE incidences of 0.7%, 0.9% and 11.8%. Refining classification of intermediate FIB-4 patients using LSM <10 kPa (low-risk) and >15 kPa (high-risk) reduced the intermediate-risk group to 5.6% while preserving predictive accuracy.

CONCLUSION: The non-invasive two-step approach of FIB-4 followed by LSM effectively stratifies MASLD-related advanced fibrosis and LREs risk in T2D. Applying LSM cut-offs of 10 and 15 kPa further optimises risk stratification for future LREs.

PMID:41911049 | DOI:10.1136/gutjnl-2025-337506

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Online library learning in human visual puzzle solving

arXiv:2603.23244v1 Announce Type: new Abstract: When learning a novel complex task, people often form efficient reusable abstractions that simplify future work, despite uncertainty about the future. We study this process in a visual puzzle task where participants define and reuse helpers -- intermediate constructions that capture repeating structure. In an online experiment, participants solved puzzles of increasing difficulty. Early on, they created many helpers, favouring completeness over efficiency. With experience, helper use became more selective and efficient, reflecting sensitivity to reuse and cost. Access to helpers enabled participants to solve puzzles that were otherwise difficult or impossible. Computational modelling shows that human decision times and number of operations used to complete a puzzle increase with search space estimated by a program induction model with library learning. In contrast, raw program length predicts failure but not effort. Together, these results point to online library learning as a core mechanism in human problem solving, allowing people to flexibly build, refine, and reuse abstractions as task demands grow.
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Founder effects shape the evolutionary dynamics of multimodality in open LLM families

arXiv:2603.22287v1 Announce Type: cross Abstract: Large language model (LLM) families are improving rapidly, yet it remains unclear how quickly multimodal capabilities emerge and propagate within open families. Using the ModelBiome AI Ecosystem dataset of Hugging Face model metadata and recorded lineage fields (>1.8x10^6 model entries), we quantify multimodality over time and along recorded parent-to-child relations. Cross-modal tasks are widespread in the broader ecosystem well before they become common within major open LLM families: within these families, multimodality remains rare through 2023 and most of 2024, then increases sharply in 2024-2025 and is dominated by image-text vision-language tasks. Across major families, the first vision-language model (VLM) variants typically appear months after the first text-generation releases, with lags ranging from ~1 month (Gemma) to more than a year for several families and ~26 months for GLM. Lineage-conditioned transition rates show weak cross-type transfer: among fine-tuning edges from text-generation parents, only 0.218% yield VLM descendants. Instead, multimodality expands primarily within existing VLM lineages: 94.5% of VLM-child fine-tuning edges originate from VLM parents, versus 4.7% from text-generation parents. At the model level, most VLM releases appear as new roots without recorded parents (~60%), while the remainder are predominantly VLM-derived; founder concentration analyses indicate rapid within-lineage amplification followed by diversification. Together, these results show that multimodality enters open LLM families through rare founder events and then expands rapidly within their descendant lineages, producing punctuated adoption dynamics that likely induce distinct, transfer-limited scaling behavior for multimodal capabilities.
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ReqFusion: A Multi-Provider Framework for Automated PEGS Analysis Across Software Domains

arXiv:2603.23482v1 Announce Type: cross Abstract: Requirements engineering is a vital, yet labor-intensive, stage in the software development process. This article introduces ReqFusion: an AI-enhanced system that automates the extraction, classification, and analysis of software requirements utilizing multiple Large Language Model (LLM) providers. The architecture of ReqFusion integrates OpenAI GPT, Anthropic Claude, and Groq models to extract functional and non-functional requirements from various documentation formats (PDF, DOCX, and PPTX) in academic, industrial, and tender proposal contexts. The system uses a domain-independent extraction method and generates requirements following the Project, Environment, Goal, and System (PEGS) approach introduced by Bertrand Meyer. The main idea is that, because the PEGS format is detailed, LLMs have more information and cues about the requirements, producing better results than a simple generic request. An ablation study confirms this hypothesis: PEGS-guided prompting achieves an F1 score of 0.88, compared to 0.71 for generic prompting under the same multi-provider configuration. The evaluation used 18 real-world documents to generate 226 requirements through automated classification, with 54.9% functional and 45.1% nonfunctional across academic, business, and technical domains. An extended evaluation on five projects with 1,050 requirements demonstrated significant improvements in extraction accuracy and a 78% reduction in analysis time compared to manual methods. The multi-provider architecture enhances reliability through model consensus and fallback mechanisms, while the PEGS-based approach ensures comprehensive coverage of all requirement categories.
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Operational machine learning for remote spectroscopic detection of CH$_{4}$ point sources

arXiv:2511.07719v2 Announce Type: replace Abstract: Mitigating anthropogenic methane sources is one of the most cost-effective levers to slow down global warming. While satellite-based imaging spectrometers, such as EMIT, PRISMA, and EnMAP, can detect these point sources, current methane retrieval methods based on matched filters produce a high number of false detections requiring manual verification. To address this challenge, we deployed a ML system for detecting methane emissions within the Methane Alert and Response System (MARS) of UNEP's IMEO. This represents the first operational deployment of automated methane point-source detection using spaceborne imaging spectrometers, providing regular global coverage and scalability to future constellations with even higher data volumes. This task required several technical advances. First, we created one of the largest and most diverse and global ML ready datasets to date of annotated methane plumes from three imaging spectrometer missions, and quantitatively compared different deep learning model configurations. Second, we extended prior evaluation methodologies from small, tiled datasets to full granules that are more representative of operational use. This revealed that deep learning models still produce a large number of false detections, a problem we addressed with model ensembling, which reduced false detections by over 74%. During 11 months of operational deployment, our system processed more than 25,000 hyperspectral products faciliting the verification of 2,851 distinct methane leaks, which resulted in 834 stakeholder notifications. We further demonstrate the model's utility in verifying mitigation success through case studies in Libya, Argentina, Oman, and Azerbaijan. Our work represents a critical step towards a global AI-assisted methane leak detection system, which is required to process the dramatically higher data volumes expected from current and future imaging spectrometers.
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Human-specific features of the cerebellum and ZP2-regulated synapse development

Human-specific transcriptomic and regulatory features are present in the cerebellum, with ZP2 playing a key role in synapse regulation. ZP2 expression is induced by pontine mossy fibers, leading to decreased synaptic proteins and neuronal activity, which provides insights into the evolutionary development of the human cerebellum.
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On Deepfake Voice Detection -- It's All in the Presentation

arXiv:2509.26471v2 Announce Type: replace-cross Abstract: While the technologies empowering malicious audio deepfakes have dramatically evolved in recent years due to generative AI advances, the same cannot be said of global research into spoofing (deepfake) countermeasures. This paper highlights how current deepfake datasets and research methodologies led to systems that failed to generalize to real world application. The main reason is due to the difference between raw deepfake audio, and deepfake audio that has been presented through a communication channel, e.g. by phone. We propose a new framework for data creation and research methodology, allowing for the development of spoofing countermeasures that would be more effective in real-world scenarios. By following the guidelines outlined here we improved deepfake detection accuracy by 39% in more robust and realistic lab setups, and by 57% on a real-world benchmark. We also demonstrate how improvement in datasets would have a bigger impact on deepfake detection accuracy than the choice of larger SOTA models would over smaller models; that is, it would be more important for the scientific community to make greater investment on comprehensive data collection programs than to simply train larger models with higher computational demands.
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Language Models are Injective and Hence Invertible

arXiv:2510.15511v4 Announce Type: replace-cross Abstract: Transformer components such as non-linear activations and normalization are inherently non-injective, suggesting that different inputs could map to the same output and prevent exact recovery of the input from a model's representations. In this paper, we challenge this view. First, we prove mathematically that transformer language models mapping discrete input sequences to their corresponding sequence of continuous representations are injective and therefore lossless, a property established at initialization and preserved during training. Second, we confirm this result empirically through billions of collision tests on six state-of-the-art language models, and observe no collisions. Third, we operationalize injectivity: we introduce SipIt, the first algorithm that provably and efficiently reconstructs the exact input text from hidden activations, establishing linear-time guarantees and demonstrating exact invertibility in practice. Overall, our work establishes injectivity as a fundamental and exploitable property of language models, with direct implications for transparency, interpretability, and safe deployment.
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Author Correction: Global, regional, and national burden of chronic respiratory diseases and impact of the COVID-19 pandemic, 1990–2023: a Global Burden of Disease study

Nature Medicine, Published online: 11 March 2026; doi:10.1038/s41591-026-04288-8

Author Correction: Global, regional, and national burden of chronic respiratory diseases and impact of the COVID-19 pandemic, 1990–2023: a Global Burden of Disease study
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R2F: Repurposing Ray Frontiers for LLM-free Object Navigation

arXiv:2603.08475v1 Announce Type: cross Abstract: Zero-shot open-vocabulary object navigation has progressed rapidly with the emergence of large Vision-Language Models (VLMs) and Large Language Models (LLMs), now widely used as high-level decision-makers instead of end-to-end policies. Although effective, such systems often rely on iterative large-model queries at inference time, introducing latency and computational overhead that limit real-time deployment. To address this problem, we repurpose ray frontiers (R2F), a recently proposed frontier-based exploration paradigm, to develop an LLM-free framework for indoor open-vocabulary object navigation. While ray frontiers were originally used to bias exploration using semantic cues carried along rays, we reinterpret frontier regions as explicit, direction-conditioned semantic hypotheses that serve as navigation goals. Language-aligned features accumulated along out-of-range rays are stored sparsely at frontiers, where each region maintains multiple directional embeddings encoding plausible unseen content. In this way, navigation then reduces to embedding-based frontier scoring and goal tracking within a classical mapping and planning pipeline, eliminating iterative large-model reasoning. We further introduce R2F-VLN, a lightweight extension for free-form language instructions using syntactic parsing and relational verification without additional VLM or LLM components. Experiments in Habitat-sim and on a real robotic platform demonstrate competitive state-of-the-art zero-shot performance with real-time execution, achieving up to 6 times faster runtime than VLM-based alternatives.
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